BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. v... 535 e-150
gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. v... 420 e-116
gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. v... 301 3e-080
gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow st... 147 9e-034
gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachi... 54 1e-005
gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA li... 54 1e-005
gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. v... 54 1e-005
gb|BF623544.2|BF623544 HVSMEa0002L02f Hordeum vulgare seedl... 40 0.16
gb|BI959786.1|BI959786 HVSMEn0021H16f Hordeum vulgare rachi... 40 0.16
>gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
5-PRIME, mRNA sequence
Length = 585
Score = 535 bits (270), Expect = e-150
Identities = 466/529 (88%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 189 cgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcggagcg 248
||||||| |||||||||||||| ||||| |||| |||||||||| |||||| |||||||
Sbjct: 56 cgcactccggcggcatgatccgggactccaagcaccactacgggcggcgcacccggagcg 115
Query: 249 acggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtccatgt 308
||||||||||||||||| | || || || |||||||| ||||||||||||||||||||||
Sbjct: 116 acggcgacggcgtctccatcctctcctcaagcaacgtatggatcgaccacgtgtccatgt 175
Query: 309 ccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgtgtcca 368
||| |||| ||||||| || |||||||| || | ||| || || ||||||||||| ||||
Sbjct: 176 ccacctgcgccgacggcctcatcgacgtcgtcagcggctccaccgccatcaccgtctcca 235
Query: 369 acagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgac-agc--c 425
|||||||||||||| ||||||||||||| ||||| |||||||||||||||| | || |
Sbjct: 236 acagccacttcaccaaccacgaccacgtcatgctcttcggcgccagcaacgcccaggagc 295
Query: 426 cgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgc 485
||||||| | ||||||||||||| || || ||||||||||||||| || || ||||
Sbjct: 296 agcaggacaggatgatgcaggtcaccgtcgccttcaaccacttcggcaagggcctcgtgc 355
Query: 486 agcggatgccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcact 545
|||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 356 agcgcatgccgcgctgccgcttcggcttcttccacgtcgtgaacaacgactacacgcact 415
Query: 546 ggatcatgtacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgct 605
||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct: 416 ggaagatgtacgccatcggcggcaaccgcgaccccaccatcatcagccagggaaaccggt 475
Query: 606 tcatcgcccccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtaca 665
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 476 tcatcgcgcccgatgaccccaatgccaaggaggtgaccaagcgggagtacacgccctaca 535
Query: 666 aggactacaaggagtgggtgtggaagtcgcagggcgacgtcatgatgaa 714
| || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 536 acgagtacaaggactgggtgtggaagtcgcagggggacgtcatgatgaa 584
>gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F03
5-PRIME, mRNA sequence
Length = 509
Score = 420 bits (212), Expect = e-116
Identities = 365/416 (87%)
Strand = Plus / Plus
Query: 445 ggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgctgccg 504
|||||| || || ||||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 11 ggtcaccgtcgccttcaaccacttcggcaagggcctcgtgcagcgcatgccgcgctgccg 70
Query: 505 ctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 71 cttcggcttcttccacgtcgtgaacaacgactacacgcactggaagatgtacgccatcgg 130
Query: 565 cggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccc 624
||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 131 cggcaaccgcgaccccaccatcatcagccagggaaaccggttcatcgcgcccgatgaccc 190
Query: 625 caacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggt 684
||| |||||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct: 191 caatgccaaggaggtgaccaagcgggagtacacgccctacaacgagtacaaggactgggt 250
Query: 685 gtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggcca 744
||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 251 gtggaagtcgcagggggacgtcatgatgaacggggccttcttcaaccagtccggcggcca 310
Query: 745 gaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcgg 804
||||||||||| ||||| || | ||||||||||| |||||||||||| ||||||||
Sbjct: 311 gaacgagcgcacgtacggcaacatggacttcatccctgccaagcacggcaagtacgtcgg 370
Query: 805 tcagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctagt 860
|||||||||| |||||||| | ||| | ||| ||||||| ||||||||||||
Sbjct: 371 gcagctcacgcagttcgccggcacgctcgaatgccgcgtcggcaagccgtgctagt 426
>gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
3-PRIME, mRNA sequence
Length = 490
Score = 301 bits (152), Expect = 3e-080
Identities = 266/304 (87%)
Strand = Plus / Minus
Query: 557 gccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgccccc 616
||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 490 gccatcggcggcaaccccgaccccaccatcatcagccagggaaaccggttcatcgcgccc 431
Query: 617 gacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaag 676
|| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 430 gatgaccccaatgccaaggaggtgaccaagcgggagtacacgccctacaacgagtacaag 371
Query: 677 gagtgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtcc 736
|| |||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct: 370 gactgggtgtggaagtcgcagggggacgtcatgatgaacggggccttcttcaaccagtcc 311
Query: 737 ggcggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgc 796
||||||||||||||||||| ||||| || | ||||||||||| ||||||||||||
Sbjct: 310 ggcggccagaacgagcgcacgtacggcaacatggacttcatccctgccaagcacggcaag 251
Query: 797 tacgtcggtcagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgc 856
|||||||| |||||||||| |||||||| | ||| | ||| ||||||| ||||||||
Sbjct: 250 tacgtcgggcagctcacgcagttcgccggcacgctcgaatgccgcgtcggcaagccgtgc 191
Query: 857 tagt 860
||||
Sbjct: 190 tagt 187
>gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C23 5', mRNA sequence
Length = 356
Score = 147 bits (74), Expect = 9e-034
Identities = 143/166 (86%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
||||||||||| || || |||||||||||||| | || || |||||| | ||||| |
Sbjct: 20 atgcaggtcaccgtcgccttcaaccacttcgggagaggcctcgtgcagagaatgccaagg 79
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||||| | || ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 80 tgccgatggggattcttccacgtggtgaacaacgactacacccactggctcatgtacgcc 139
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgct 605
|||||||||| || |||||| ||||||||||||||||| |||||||
Sbjct: 140 atcggcggcagcaagaacccgaccatcatcagccaggggaaccgct 185
>gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025E05f, mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 1e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 273 cttccatgtggtgaacaatgactacactcactgggagatgtacgccatcgg 323
>gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14d11 5', mRNA sequence
Length = 554
Score = 54.0 bits (27), Expect = 1e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 44 cttccatgtggtgaacaatgactacactcactgggagatgtacgccatcgg 94
>gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. vulgare cDNA clone HS05C08
5-PRIME, mRNA sequence
Length = 521
Score = 54.0 bits (27), Expect = 1e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| ||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 30 cttccatgtggtgaacaatgactacactcactgggagatgtacgccatcgg 80
>gb|BF623544.2|BF623544 HVSMEa0002L02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002L02f, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 ccccgacgaccccaacgcca 632
||||||||||||||||||||
Sbjct: 354 ccccgacgaccccaacgcca 373
>gb|BI959786.1|BI959786 HVSMEn0021H16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021H16f, mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 ccccgacgaccccaacgcca 632
||||||||||||||||||||
Sbjct: 355 ccccgacgaccccaacgcca 374
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,609
Number of Sequences: 312970
Number of extensions: 130609
Number of successful extensions: 36140
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36116
Number of HSP's gapped (non-prelim): 17
length of query: 1155
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1136
effective length of database: 169,188,109
effective search space: 192197691824
effective search space used: 192197691824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)