BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU998297.1|BU998297 HI10J17r HI Hordeum vulgare subsp. v... 391 e-107
gb|CA023599.1|CA023599 HZ46M07r HZ Hordeum vulgare subsp. v... 178 3e-043
gb|BI778536.2|BI778536 EBro07_SQ003_J05_R root, 3 week, red... 168 2e-040
gb|BI959749.1|BI959749 HVSMEn0021D20f Hordeum vulgare rachi... 159 2e-037
gb|AL507034.1|AL507034 AL507034 Hordeum vulgare Barke devel... 149 2e-034
gb|BI780847.2|BI780847 EBma05_SQ001_C18_R maternal, 12 DPA,... 143 1e-032
gb|CA006902.1|CA006902 HU06A17r HU Hordeum vulgare subsp. v... 100 2e-019
gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike... 64 1e-008
gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. v... 64 1e-008
gb|BE214498.2|BE214498 HV_CEb0003K03f Hordeum vulgare seedl... 56 3e-006
gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. v... 56 3e-006
gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. v... 56 3e-006
gb|BI958075.1|BI958075 HVSMEn0013E23f Hordeum vulgare rachi... 48 6e-004
gb|BI958103.1|BI958103 HVSMEn0013G07f Hordeum vulgare rachi... 48 6e-004
gb|BG301150.1|BG301150 HVSMEb0019L18f Hordeum vulgare seedl... 46 0.002
gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. v... 46 0.002
gb|BG367159.1|BG367159 HVSMEi0011B06f Hordeum vulgare 20 DA... 44 0.010
gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph1... 42 0.038
gb|AL508768.1|AL508768 AL508768 Hordeum vulgare Barke devel... 40 0.15
gb|BF629341.2|BF629341 HVSMEb0010O07f Hordeum vulgare seedl... 40 0.15
gb|BG301085.2|BG301085 HVSMEb0019I02f Hordeum vulgare seedl... 40 0.15
gb|BM444515.1|BM444515 EBem09_SQ005_I08_R embryo, 1 Day ger... 40 0.15
gb|BJ466430.1|BJ466430 BJ466430 K. Sato unpublished cDNA li... 40 0.15
gb|BJ468216.1|BJ468216 BJ468216 K. Sato unpublished cDNA li... 40 0.15
gb|BQ458351.1|BQ458351 HA05H18r HA Hordeum vulgare subsp. v... 40 0.15
gb|BQ462578.1|BQ462578 HI01F14T HI Hordeum vulgare subsp. v... 40 0.15
gb|BM377536.2|BM377536 EBem04_SQ003_G23_R embryo, 12 DPA, n... 40 0.15
gb|BQ754267.1|BQ754267 EBca01_SQ003_G04_R carpel, pre-anthe... 40 0.15
gb|BQ759382.1|BQ759382 EBpi01_SQ004_I09_R pistil, 1 DPA, no... 40 0.15
gb|BQ762168.1|BQ762168 EBro01_SQ005_C05 _R root, 3 week, hy... 40 0.15
gb|BU981946.1|BU981946 HA25B06r HA Hordeum vulgare subsp. v... 40 0.15
gb|BU994367.1|BU994367 HM06N04r HM Hordeum vulgare subsp. v... 40 0.15
gb|BU998427.1|BU998427 HI11A11r HI Hordeum vulgare subsp. v... 40 0.15
gb|CA023182.1|CA023182 HZ45H16r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CA023710.1|CA023710 HZ47C15r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CD662210.1|CD662210 UCRHV18_01af06_b1 Drought-stressed D... 40 0.15
gb|CD663346.1|CD663346 UCRHV18_05ag10_b1 Drought-stressed D... 40 0.15
gb|CV053511.1|CV053511 BNEL100b12 Barley EST endosperm libr... 40 0.15
>gb|BU998297.1|BU998297 HI10J17r HI Hordeum vulgare subsp. vulgare cDNA clone HI10J17
5-PRIME, mRNA sequence
Length = 583
Score = 391 bits (197), Expect = e-107
Identities = 368/423 (86%), Gaps = 4/423 (0%)
Strand = Plus / Plus
Query: 201 gctgcaggcggcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||| ||| || ||||| ||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 157 gctgcgggccgcctacgccgcgctgcaggcctggaagcagacggccatcttctccgaccc 216
Query: 261 gtccaacttcacctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactg 320
||||||||||||| |||||||| |||||| |||||||||| |||| |||| |||||||
Sbjct: 217 gtccaacttcaccgccaactggcaaggccccgacgtgtgcgcctacaccggcgtctactg 276
Query: 321 cgcgccgcggccctccg---acggggcgctggccgtggccggcatcgacct-aaccacgc 376
||||||| ||||||| |||| ||| || |||||||||| |||||||| ||||||||
Sbjct: 277 cgcgccggccccctccgcctacggcgcggtgaccgtggccgggatcgacctcaaccacgc 336
Query: 377 cgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctggcgctgct 436
||||||||||||| || | |||||| |||||| |||||| | || ||||||||||||||
Sbjct: 337 cgacatcgcgggctaccttcccgcctccctcccgctcggcctcccggacctggcgctgct 396
Query: 437 ccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcct 496
||||||||||||||||||||||||||||||| |||||||||| | | || |||||||||
Sbjct: 397 ccacctcaactccaaccgcttctgcggggtggtgccggacaccttccgccgcctgcgcct 456
Query: 497 cctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgct 556
||||||||||||||||||||||||||||||||||||||| |||||||| | || |||||
Sbjct: 457 cctccacgagctcgacctcagcaacaaccgcttcgtcggtgccttcccggaggtggtgct 516
Query: 557 cgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatccc 616
|||||| || || | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 cgcgctgccgtccttgaagtacctcgacctccgcttcaacgacttcgagggcgccatccc 576
Query: 617 gcc 619
|||
Sbjct: 577 gcc 579
>gb|CA023599.1|CA023599 HZ46M07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46M07
5-PRIME, mRNA sequence
Length = 376
Score = 178 bits (90), Expect = 3e-043
Identities = 210/250 (84%)
Strand = Plus / Plus
Query: 506 gctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgctccc 565
|||||| ||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 10 gctcgatctcagcaacaaccgcctcgtcggcgccttccccgacgtcgtgctccgcctgcc 69
Query: 566 ctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccgccgct 625
| ||| | |||||||||||||||| |||||| |||||||||||| | || |||
Sbjct: 70 cagcctcaggtacctcgacctccgctacaacgagttcgagggccccgtgccaagcgagct 129
Query: 626 cttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcgggcccatccc 685
||||||||||||||||||||||||| || |||||||||||||| ||||| | |||||
Sbjct: 130 cttcgaccgcccgctcgacgccatcttcatcaactccaaccgcttccgcttccagatccc 189
Query: 686 ggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaaccgcctcggcgg 745
| |||| |||||||||||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 190 cgacaacgtcggcaactcgccggcctccgtcctcgtgctcgccaacaacgacttcggcgg 249
Query: 746 ctgcatcccg 755
|||| |||||
Sbjct: 250 ctgcctcccg 259
>gb|BI778536.2|BI778536 EBro07_SQ003_J05_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_J05 5', mRNA sequence
Length = 623
Score = 168 bits (85), Expect = 2e-040
Identities = 157/181 (86%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 380 cctcctccacgagctcgacctcagcaacaaccgcttcgtgggcgcgttccccaccgtcgt 439
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| | | || || ||| | | ||||||||||||||||||||||||||||||| | |
Sbjct: 440 gctccagatgccgtccctcaggttcctcgacctccgcttcaacgacttcgagggcggcgt 499
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 500 tccgcgggagctattcgaccgcccgttcgacgccatcttcctcaaccacaaccgcctccg 559
Query: 674 c 674
|
Sbjct: 560 c 560
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 422 cgacctggcgctgctccacctcaactccaaccgcttctgcgg 463
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 308 cgacctcgcgctgctccacctcaactccaaccgcttctgcgg 349
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||||| ||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 99 gcgtacgtcgcgctgcagacgtggaagcagcaggccatcttctccgaccc 148
>gb|BI959749.1|BI959749 HVSMEn0021D20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021D20f, mRNA sequence
Length = 642
Score = 159 bits (80), Expect = 2e-037
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 319 cctcctccacgagctcgacctcagcaacaaccgcttcgtgggcgcgttccccaccgtcgt 378
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| | | || || ||| | | ||||||||||||||||||||||||||||||| | |
Sbjct: 379 gctccagatgccgtccctcaggttcctcgacctccgcttcaacgacttcgagggcggcgt 438
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||| ||||||||||| |||||||| ||| ||||||||
Sbjct: 439 tccgcgggagctattcgaccgcccgttcgacgccatcttcctcaaccacaaacgcctccg 498
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 422 cgacctggcgctgctccacctcaactccaaccgcttctgcgg 463
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 cgacctcgcgctgctccacctcaactccaaccgcttctgcgg 288
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||||| ||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 38 gcgtacgtcgcgctgcagacgtggaagcagcaggccatcttctccgaccc 87
>gb|AL507034.1|AL507034 AL507034 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P17T 5',
mRNA sequence
Length = 664
Score = 149 bits (75), Expect = 2e-034
Identities = 156/182 (85%), Gaps = 1/182 (0%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 380 cctcctccacgagctcgacctcagcaacaaccgcttcgtgggcgcgttccccaccgtcgt 439
Query: 554 gctcgcgctcccctcgctccgctacct-cgacctccgcttcaacgacttcgagggcccca 612
|||| | | || || ||| | | ||| ||||||||||||||||||||||||||| |
Sbjct: 440 gctccagatgccgtccctcaggttcctnngacctccgcttcaacgacttcgagggcggcg 499
Query: 613 tcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctcc 672
| |||| | ||| |||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 500 ttccgcgggagctattcgaccgcccgttcgacgccatcttcctcaaccacaaccgcctcc 559
Query: 673 gc 674
||
Sbjct: 560 gc 561
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 422 cgacctggcgctgctccacctcaactccaaccgcttctgcgg 463
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 308 cgacctcgcgctgctccacctcaactccaaccgcttctgcgg 349
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||||| ||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 99 gcgtacgtcgcgctgcagacgtggaagcagcaggccatcttctccgaccc 148
>gb|BI780847.2|BI780847 EBma05_SQ001_C18_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_C18 5', mRNA sequence
Length = 506
Score = 143 bits (72), Expect = 1e-032
Identities = 135/156 (86%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 351 cctcctccacgagctcgacctcagcaacaaccgcttcgtgggcgcgttccccaccgtcgt 410
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| | | || || ||| | | ||||||||||||||||||||||||||||||| | |
Sbjct: 411 gctccagatgccgtccctcaggttcctcgacctccgcttcaacgacttcgagggcggcgt 470
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccat 649
|||| | ||| |||||||||||| ||||||||||
Sbjct: 471 tccgcgggagctattcgaccgcccgttcgacgccat 506
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 422 cgacctggcgctgctccacctcaactccaaccgcttctgcgg 463
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 279 cgacctcgcgctgctccacctcaactccaaccgcttctgcgg 320
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||||| ||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 70 gcgtacgtcgcgctgcagacgtggaagcagcaggccatcttctccgaccc 119
>gb|CA006902.1|CA006902 HU06A17r HU Hordeum vulgare subsp. vulgare cDNA clone HU06A17
5-PRIME, mRNA sequence
Length = 584
Score = 99.6 bits (50), Expect = 2e-019
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 523 cctcctccacgagctcgatctcagcaacaaccgcctcgtcggcgccttccccgacgtcgt 582
Query: 554 gc 555
||
Sbjct: 583 gc 584
Score = 48.1 bits (24), Expect = 6e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 436 tccacctcaactccaaccgcttctgcgg 463
||||| ||||||||||||||||||||||
Sbjct: 465 tccacgtcaactccaaccgcttctgcgg 492
>gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003F09f, mRNA sequence
Length = 1107
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 627 ttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgc 674
|||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 9 ttcgaccgcccgttcgacgccatcttcctcaaccacaaccgcctccgc 56
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 779 cacgctcaacgagatcgtcctcatcgacgacgacctcac 817
|||||||||||||||| |||||||| || ||| ||||||
Sbjct: 162 cacgctcaacgagatcctcctcatcaacaacggcctcac 200
>gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M18
3-PRIME, mRNA sequence
Length = 576
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 627 ttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgc 674
|||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 25 ttcgaccgcccgttcgacgccatcttcctcaaccacaaccgcctccgc 72
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 779 cacgctcaacgagatcgtcctcatcgacgacgacctcac 817
|||||||||||||||| |||||||| || ||| ||||||
Sbjct: 177 cacgctcaacgagatcctcctcatcaacaacggcctcac 215
>gb|BE214498.2|BE214498 HV_CEb0003K03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003K03f, mRNA sequence
Length = 713
Score = 56.0 bits (28), Expect = 3e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 490 tgcgcctcctccacgagctcgacctcagcaacaacc 525
||||||||||| ||||||||||| ||||||||||||
Sbjct: 441 tgcgcctcctctacgagctcgacgtcagcaacaacc 476
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 579 ctcgacctccgcttcaacgacttcga 604
||||||||||| ||||||||||||||
Sbjct: 530 ctcgacctccggttcaacgacttcga 555
>gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B14
5-PRIME, mRNA sequence
Length = 508
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaacc 525
||||||||||||||||||| ||||||||||||
Sbjct: 14 cctcctccacgagctcgacgtcagcaacaacc 45
>gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. vulgare cDNA clone HB15C18
5-PRIME, mRNA sequence
Length = 511
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaacc 525
||||||||||||||||||| ||||||||||||
Sbjct: 14 cctcctccacgagctcgacgtcagcaacaacc 45
>gb|BI958075.1|BI958075 HVSMEn0013E23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013E23f, mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 490 tgcgcctcctccacgagctcgacctcagcaacaacc 525
|||| |||||| ||||||||||| ||||||||||||
Sbjct: 366 tgcgtctcctctacgagctcgacgtcagcaacaacc 401
>gb|BI958103.1|BI958103 HVSMEn0013G07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013G07f, mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 490 tgcgcctcctccacgagctcgacctcagcaacaacc 525
|||| |||||| ||||||||||| ||||||||||||
Sbjct: 364 tgcgtctcctctacgagctcgacgtcagcaacaacc 399
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 579 ctcgacctccgcttcaacgacttcga 604
||||||||||| ||||||||||||||
Sbjct: 453 ctcgacctccggttcaacgacttcga 478
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccg 454
||||||| ||| | ||||||||||||||||||||
Sbjct: 295 ccgacctcgcggtcctccacctcaactccaaccg 328
>gb|BG301150.1|BG301150 HVSMEb0019L18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019L18f, mRNA sequence
Length = 930
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 856 tcacggtgttcgacgtcagcggcaacc 882
||||||||||||||| |||||||||||
Sbjct: 240 tcacggtgttcgacgccagcggcaacc 266
>gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M10
5-PRIME, mRNA sequence
Length = 451
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 681 atcccggccaacctcggcaactcgccggcctccgt 715
||||||| |||| ||||||||||||||| ||||||
Sbjct: 49 atcccggacaacatcggcaactcgccggtctccgt 83
>gb|BG367159.1|BG367159 HVSMEi0011B06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011B06f, mRNA sequence
Length = 507
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 857 cacggtgttcgacgtcagcggcaacc 882
|||||||||||||| |||||||||||
Sbjct: 245 cacggtgttcgacgccagcggcaacc 270
>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete
cds
Length = 15688
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 730 acaaccgcctcggcggctgcatcccgccg 758
|||||||||||| ||||||||||| ||||
Sbjct: 1212 acaaccgcctcgacggctgcatcctgccg 1184
>gb|AL508768.1|AL508768 AL508768 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09L23V 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 237 accggttccgcggggtgctgccggacac 264
>gb|BF629341.2|BF629341 HVSMEb0010O07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010O07f, mRNA sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 217 accggttccgcggggtgctgccggacac 244
>gb|BG301085.2|BG301085 HVSMEb0019I02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019I02f, mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 613 tcccgccgccgctcttcgac 632
||||||||||||||||||||
Sbjct: 202 tcccgccgccgctcttcgac 183
>gb|BM444515.1|BM444515 EBem09_SQ005_I08_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_I08 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 212 accggttccgcggggtgctgccggacac 239
>gb|BJ466430.1|BJ466430 BJ466430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32b11 3', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 tcccgccgccgctcttcgac 632
||||||||||||||||||||
Sbjct: 243 tcccgccgccgctcttcgac 262
>gb|BJ468216.1|BJ468216 BJ468216 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37k17 3', mRNA sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 tcccgccgccgctcttcgac 632
||||||||||||||||||||
Sbjct: 261 tcccgccgccgctcttcgac 280
>gb|BQ458351.1|BQ458351 HA05H18r HA Hordeum vulgare subsp. vulgare cDNA clone HA05H18
5-PRIME, mRNA sequence
Length = 372
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 67 accggttccgcggggtgctgccggacac 94
>gb|BQ462578.1|BQ462578 HI01F14T HI Hordeum vulgare subsp. vulgare cDNA clone HI01F14
5-PRIME, mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 225 accggttccgcggggtgctgccggacac 252
>gb|BM377536.2|BM377536 EBem04_SQ003_G23_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_G23 5', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 114 accggttccgcggggtgctgccggacac 141
>gb|BQ754267.1|BQ754267 EBca01_SQ003_G04_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_G04 5', mRNA sequence
Length = 315
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 208 accggttccgcggggtgctgccggacac 235
>gb|BQ759382.1|BQ759382 EBpi01_SQ004_I09_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_I09 5', mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 136 accggttccgcggggtgctgccggacac 163
>gb|BQ762168.1|BQ762168 EBro01_SQ005_C05 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_C05 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 221 accggttccgcggggtgctgccggacac 248
>gb|BU981946.1|BU981946 HA25B06r HA Hordeum vulgare subsp. vulgare cDNA clone HA25B06
5-PRIME, mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 66 accggttccgcggggtgctgccggacac 93
>gb|BU994367.1|BU994367 HM06N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N04
5-PRIME, mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 150 accggttccgcggggtgctgccggacac 177
>gb|BU998427.1|BU998427 HI11A11r HI Hordeum vulgare subsp. vulgare cDNA clone HI11A11
5-PRIME, mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 199 accggttccgcggggtgctgccggacac 226
>gb|CA023182.1|CA023182 HZ45H16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H16
5-PRIME, mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 144 accggttccgcggggtgctgccggacac 171
>gb|CA023710.1|CA023710 HZ47C15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47C15
5-PRIME, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 243 accggttccgcggggtgctgccggacac 270
>gb|CD662210.1|CD662210 UCRHV18_01af06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01af06, mRNA sequence
Length = 374
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 tcccgccgccgctcttcgac 632
||||||||||||||||||||
Sbjct: 199 tcccgccgccgctcttcgac 218
>gb|CD663346.1|CD663346 UCRHV18_05ag10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ag10, mRNA sequence
Length = 462
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 tcccgccgccgctcttcgac 632
||||||||||||||||||||
Sbjct: 308 tcccgccgccgctcttcgac 327
>gb|CV053511.1|CV053511 BNEL100b12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL100b12 5' similar to prohibitin,
mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 451 accgcttctgcggggtgctgccggacac 478
|||| ||| |||||||||||||||||||
Sbjct: 201 accggttccgcggggtgctgccggacac 228
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,282
Number of Sequences: 312970
Number of extensions: 220282
Number of successful extensions: 63751
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63633
Number of HSP's gapped (non-prelim): 111
length of query: 1089
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1070
effective length of database: 169,188,109
effective search space: 181031276630
effective search space used: 181031276630
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)