BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815092.1|CN815092 HRO4505_G07_M13ZS5 Lib AA071E1X Aven... 30 1.7
gb|CN815831.1|CN815831 HRO4510_H12_O24ZS5 Lib AA071E1X Aven... 30 1.7
gb|CN819487.1|CN819487 HRO4406_F07_K14ZS5 Lib AA069E1X Aven... 30 1.7
gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox... 30 1.7
gb|CN815793.1|CN815793 HRO4510_E10_I20ZS5 Lib AA071E1X Aven... 28 6.7
gb|CN815987.1|CN815987 HRO4515_F06_L11ZS5 Lib AA071E1X Aven... 28 6.7
gb|CN816047.1|CN816047 HRO4516_C10_F20ZS5 Lib AA071E1X Aven... 28 6.7
gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Aven... 28 6.7
gb|CN816986.1|CN816986 HRO4527_A04_B07ZS5 Lib AA071E1X Aven... 28 6.7
gb|CN817257.1|CN817257 HRO4464_F01_K02ZS5 Lib AA070E1X Aven... 28 6.7
gb|CN817924.1|CN817924 HRO4462_A09_B18ZS5 Lib AA070E1X Aven... 28 6.7
gb|CN818448.1|CN818448 HRO4460_D11_G22ZS5 Lib AA070E1X Aven... 28 6.7
gb|CN818879.1|CN818879 HRO4455_H12_O23ZS5 Lib AA070E1X Aven... 28 6.7
gb|CN819022.1|CN819022 HRO4455_F07_K13ZS5 Lib AA070E1X Aven... 28 6.7
gb|CN819380.1|CN819380 HRO4405_C09_E17ZS5 Lib AA069E1X Aven... 28 6.7
gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Aven... 28 6.7
gb|CN819607.1|CN819607 HRO4402_B03_C06ZS5 Lib AA069E1X Aven... 28 6.7
gb|CN820848.1|CN820848 HRO4420_F01_L02ZS5 Lib AA069E1X Aven... 28 6.7
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 28 6.7
dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag... 28 6.7
>gb|CN815092.1|CN815092 HRO4505_G07_M13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_G07_M13, mRNA sequence
Length = 381
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 140 agaagaagctgaggcagaa 158
|||||||||||||| ||||
Sbjct: 167 agaagaagctgaggaagaa 185
>gb|CN815831.1|CN815831 HRO4510_H12_O24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H12_O24, mRNA sequence
Length = 799
Score = 30.2 bits (15), Expect = 1.7
Identities = 24/27 (88%)
Strand = Plus / Minus
Query: 71 ctcaaattgcagcgcagctgccaggga 97
||||||||||| ||||||| ||||||
Sbjct: 427 ctcaaattgcaaagcagctggcaggga 401
>gb|CN819487.1|CN819487 HRO4406_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_F07_K14, mRNA
sequence
Length = 752
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 138 caagaagaagctgaggcag 156
||||| |||||||||||||
Sbjct: 493 caagaggaagctgaggcag 511
>gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox protein gene, partial cds
Length = 285
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 gtgcagctcccacca 223
|||||||||||||||
Sbjct: 57 gtgcagctcccacca 43
>gb|CN815793.1|CN815793 HRO4510_E10_I20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_E10_I20, mRNA sequence
Length = 792
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 27 agacctcatcatcgagct 44
||||||||||| ||||||
Sbjct: 243 agacctcatcaacgagct 226
>gb|CN815987.1|CN815987 HRO4515_F06_L11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F06_L11, mRNA sequence
Length = 419
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaag 147
||||||||||||||
Sbjct: 113 gcatcaagaagaag 126
>gb|CN816047.1|CN816047 HRO4516_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_C10_F20, mRNA sequence
Length = 771
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 tcaagaagaagctg 150
||||||||||||||
Sbjct: 580 tcaagaagaagctg 593
>gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C11_F21, mRNA sequence
Length = 509
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaag 147
||||||||||||||
Sbjct: 227 gcatcaagaagaag 240
>gb|CN816986.1|CN816986 HRO4527_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_A04_B07, mRNA sequence
Length = 669
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 agatcaagaatcta 123
||||||||||||||
Sbjct: 159 agatcaagaatcta 172
>gb|CN817257.1|CN817257 HRO4464_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_F01_K02, mRNA sequence
Length = 621
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 tcatcgagctgcac 48
||||||||||||||
Sbjct: 291 tcatcgagctgcac 304
>gb|CN817924.1|CN817924 HRO4462_A09_B18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_A09_B18, mRNA sequence
Length = 799
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 gcccaagacgaaga 26
||||||||||||||
Sbjct: 515 gcccaagacgaaga 528
>gb|CN818448.1|CN818448 HRO4460_D11_G22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_D11_G22, mRNA sequence
Length = 829
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ctgtcctcgggaac 63
||||||||||||||
Sbjct: 587 ctgtcctcgggaac 574
>gb|CN818879.1|CN818879 HRO4455_H12_O23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_H12_O23, mRNA sequence
Length = 879
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 262 ccatcaagcactgg 275
||||||||||||||
Sbjct: 165 ccatcaagcactgg 178
>gb|CN819022.1|CN819022 HRO4455_F07_K13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_F07_K13, mRNA sequence
Length = 806
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 agaagctgaggcag 156
||||||||||||||
Sbjct: 14 agaagctgaggcag 1
>gb|CN819380.1|CN819380 HRO4405_C09_E17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_C09_E17, mRNA
sequence
Length = 569
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 aagctgaggcagaa 158
||||||||||||||
Sbjct: 108 aagctgaggcagaa 121
>gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_G10_M19, mRNA
sequence
Length = 520
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaag 147
||||||||||||||
Sbjct: 289 gcatcaagaagaag 302
>gb|CN819607.1|CN819607 HRO4402_B03_C06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B03_C06, mRNA
sequence
Length = 495
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 464 ctctctatttccct 477
||||||||||||||
Sbjct: 172 ctctctatttccct 185
>gb|CN820848.1|CN820848 HRO4420_F01_L02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F01_L02, mRNA
sequence
Length = 440
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 433 agtccatcaacctg 446
||||||||||||||
Sbjct: 337 agtccatcaacctg 350
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgcc 92
||||||||||||||
Sbjct: 1410 gcagcgcagctgcc 1423
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
polyprotein
Length = 8665
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 tgataatgagatca 115
||||||||||||||
Sbjct: 7163 tgataatgagatca 7176
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 tgataatgagatca 115
||||||||||||||
Sbjct: 215 tgataatgagatca 228
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1337
Number of Sequences: 8143
Number of extensions: 1337
Number of successful extensions: 358
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 22
length of query: 480
length of database: 4,702,463
effective HSP length: 16
effective length of query: 464
effective length of database: 4,572,175
effective search space: 2121489200
effective search space used: 2121489200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)