BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Aven... 38 0.026
gb|BE439328.1|BE439328 CDO309_WHE05D11F ITEC CDO Oat cDNA L... 36 0.10
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 36 0.10
gb|BE439372.1|BE439372 CDO1527_WHE05H10R ITEC CDO Oat cDNA ... 34 0.41
gb|CN814905.1|CN814905 HRO4503_G07_N13ZS5 Lib AA071E1X Aven... 34 0.41
>gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G03_N06, mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.026
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1070 tactggatcgtgaagaactcgtggggc 1096
||||||||| | |||||||||||||||
Sbjct: 150 tactggatcataaagaactcgtggggc 176
>gb|BE439328.1|BE439328 CDO309_WHE05D11F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO309_WHE05D11, mRNA sequence
Length = 422
Score = 36.2 bits (18), Expect = 0.10
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1070 tactggatcgtgaagaactcgtgggg 1095
|||||||| ||||||||||||||||
Sbjct: 306 tactggattttgaagaactcgtgggg 281
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 36.2 bits (18), Expect = 0.10
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1209 cgccgccgggcccgacgccgccgtcg 1234
|||||||||| ||| |||||||||||
Sbjct: 466 cgccgccgggaccggcgccgccgtcg 441
>gb|BE439372.1|BE439372 CDO1527_WHE05H10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1527_WHE05H10, mRNA sequence
Length = 251
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 307 cggcgaggacgacgacg 323
|||||||||||||||||
Sbjct: 187 cggcgaggacgacgacg 171
>gb|CN814905.1|CN814905 HRO4503_G07_N13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G07_N13, mRNA sequence
Length = 286
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1531 ctggtgaggagattgag 1547
|||||||||||||||||
Sbjct: 120 ctggtgaggagattgag 104
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3521
Number of Sequences: 8143
Number of extensions: 3521
Number of successful extensions: 1069
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 7
length of query: 1761
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1744
effective length of database: 4,564,032
effective search space: 7959671808
effective search space used: 7959671808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)