BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816394.1|CN816394 HRO4520_C03_F06ZS5 Lib AA071E1X Aven... 74 2e-013
>gb|CN816394.1|CN816394 HRO4520_C03_F06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C03_F06, mRNA sequence
Length = 591
Score = 73.8 bits (37), Expect = 2e-013
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 244 agaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagta 303
||||| |||||| | ||||||| |||||||| |||||| ||||||| || || ||| |
Sbjct: 338 agaagcacccttcttccttcagtgttggctgcactcataagcttgcaaggatctacactg 279
Query: 304 atctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgt 363
||||||||| ||| || ||||||||| || |||| || |||||||| ||| || |||
Sbjct: 278 atctccacattggttgaactgccagcagctgtgtacacgcgctcaaacgcaatcaactgc 219
Query: 364 tttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactc 423
|||| ||| || || || ||| |||||||||||| | || || ||||||||||| |||
Sbjct: 218 tttagagggaaccctggagcgcccgatttcgatctcacaaagagcagaacagcatggctc 159
Query: 424 ccatccatg 432
|||||||||
Sbjct: 158 ccatccatg 150
Score = 46.1 bits (23), Expect = 5e-005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 509 agtctagtccatccctccttgtgtatgcaggctttctgctgat 551
||||||| || ||||||| ||||||||||||||| || |||||
Sbjct: 73 agtctagcccgtccctccgtgtgtatgcaggcttcctactgat 31
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2124
Number of Sequences: 8143
Number of extensions: 2124
Number of successful extensions: 502
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 4
length of query: 863
length of database: 4,702,463
effective HSP length: 16
effective length of query: 847
effective length of database: 4,572,175
effective search space: 3872632225
effective search space used: 3872632225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)