BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Aven... 90 4e-018
gb|CN817105.1|CN817105 HRO4528_C07_F14ZS5 Lib AA071E1X Aven... 36 0.057
gb|CN819648.1|CN819648 HRO4402_E12_I24ZS5 Lib AA069E1X Aven... 36 0.057
gb|CN817075.1|CN817075 HRO4527_H12_P23ZS5 Lib AA071E1X Aven... 34 0.23
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 34 0.23
>gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_E01_J02, mRNA sequence
Length = 229
Score = 89.7 bits (45), Expect = 4e-018
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgagcaggtcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 129
>gb|CN817105.1|CN817105 HRO4528_C07_F14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C07_F14, mRNA sequence
Length = 691
Score = 36.2 bits (18), Expect = 0.057
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 713 gaagatgaggaggaggatgacg 734
||||||||||| ||||||||||
Sbjct: 478 gaagatgaggatgaggatgacg 499
>gb|CN819648.1|CN819648 HRO4402_E12_I24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_E12_I24, mRNA
sequence
Length = 535
Score = 36.2 bits (18), Expect = 0.057
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 713 gaagatgaggaggaggatgacg 734
||||||||||| ||||||||||
Sbjct: 290 gaagatgaggatgaggatgacg 311
>gb|CN817075.1|CN817075 HRO4527_H12_P23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_H12_P23, mRNA sequence
Length = 357
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 234 tcgtagacagcctcctc 250
|||||||||||||||||
Sbjct: 49 tcgtagacagcctcctc 65
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 258 tgctctccggcgccgtc 274
|||||||||||||||||
Sbjct: 371 tgctctccggcgccgtc 355
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2851
Number of Sequences: 8143
Number of extensions: 2851
Number of successful extensions: 663
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 6
length of query: 991
length of database: 4,702,463
effective HSP length: 16
effective length of query: 975
effective length of database: 4,572,175
effective search space: 4457870625
effective search space used: 4457870625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)