BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817408.1|CN817408 HRO4454_E10_J20ZS5 Lib AA070E1X Aven... 151 4e-036
>gb|CN817408.1|CN817408 HRO4454_E10_J20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_E10_J20, mRNA sequence
Length = 484
Score = 151 bits (76), Expect = 4e-036
Identities = 145/168 (86%)
Strand = Plus / Minus
Query: 522 ccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaagttcg 581
||||||| |||||||| ||||| |||| | |||| ||||| || ||||||| |||||||
Sbjct: 187 ccacacaagtgcggggtggagacaggattctgaatgagtttgggcggttgtgaaagttcg 128
Query: 582 tttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggccaactc 641
| |||||||| ||||| || |||||||| | |||||||||||||||||| ||||||||||
Sbjct: 127 tctcgggcactcctggtactccttcaggtgtcgtgaagtgatccacgtcatggccaactc 68
Query: 642 ttccatgtccaccgaagaccagagcatcagagtccagggctactctgt 689
||||||||||||| || | ||||||||| |||||||| ||||| ||||
Sbjct: 67 ttccatgtccaccaaacatcagagcatcggagtccagagctaccctgt 20
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6953
Number of Sequences: 8143
Number of extensions: 6953
Number of successful extensions: 1947
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 1
length of query: 2812
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2795
effective length of database: 4,564,032
effective search space: 12756469440
effective search space used: 12756469440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)