BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3173057.2.1
(1264 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV534702.1|AV534702 AV534702 Arabidopsis thaliana flower... 48 0.004
ref|NM_100508.1| Arabidopsis thaliana cysteine-type endopep... 48 0.004
gb|B11159.1|B11159 F17E11-T7 IGF Arabidopsis thaliana genom... 46 0.015
gb|AQ250085.1|AQ250085 F27B9-Sp6.1 IGF Arabidopsis thaliana... 46 0.015
gb|BH240425.1|BH240425 AUINB23TF AUIN Arabidopsis thaliana ... 46 0.015
gb|T04027.1|T04027 230 AT-NHC Arabidopsis thaliana cDNA clo... 46 0.015
gb|T46267.1|T46267 9530 Lambda-PRL2 Arabidopsis thaliana cD... 46 0.015
gb|AV824936.1|AV824936 AV824936 RAFL6 Arabidopsis thaliana ... 46 0.015
gb|BU635571.1|BU635571 025E10 Infected Arabidopsis Leaf Ara... 46 0.015
gb|CA963954.1|CA963954 cATI007F10AF Infected Arabidopsis Le... 46 0.015
gb|CB260178.1|CB260178 91-E011179-013-009-F24-T7R MPIZ-ADIS... 46 0.015
gb|CK119011.1|CK119011 215a02.p1 AtM1 Arabidopsis thaliana ... 46 0.015
gb|AC074226.3|AC074226 Arabidopsis thaliana chromosome 1 cl... 46 0.015
gb|AY039606.1| Arabidopsis thaliana F2G19.31/F2G19.31 mRNA,... 46 0.015
gb|AY081730.1| Arabidopsis thaliana F2G19.31/F2G19.31 mRNA,... 46 0.015
gb|AY072130.1| Arabidopsis thaliana putative cysteine prote... 46 0.015
gb|AY133781.1| Arabidopsis thaliana clone U11707 putative c... 46 0.015
gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BA... 46 0.015
dbj|D13043.1|ATHRD21A Arabidopsis thaliana rd21A gene for t... 46 0.015
dbj|AK221689.1| Arabidopsis thaliana mRNA for cysteine prot... 46 0.015
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 46 0.015
ref|NM_103612.2| Arabidopsis thaliana cysteine-type endopep... 46 0.015
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.015
gb|T04139.1|T04139 89 Lambda-PRL2 Arabidopsis thaliana cDNA... 42 0.23
gb|H37436.1|H37436 15565 Lambda-PRL2 Arabidopsis thaliana c... 42 0.23
gb|AY062608.1| Arabidopsis thaliana cysteine protease compo... 42 0.23
gb|AY114661.1| Arabidopsis thaliana cysteine protease compo... 42 0.23
emb|AX461365.1| Sequence 294 from Patent WO0198480 42 0.23
emb|AX506677.1| Sequence 1372 from Patent WO0216655 42 0.23
dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.23
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.23
ref|NM_123672.2| Arabidopsis thaliana cysteine-type endopep... 42 0.23
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.23
>gb|AV534702.1|AV534702 AV534702 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB084e10F 3', mRNA sequence
Length = 592
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1129 tactgcagagaaagcccagcaacttccgcatt 1160
|||||||||||| |||||||||| ||||||||
Sbjct: 453 tactgcagagaatgcccagcaacctccgcatt 422
>ref|NM_100508.1| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type
peptidase AT1G06260 mRNA, complete cds
Length = 1032
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1129 tactgcagagaaagcccagcaacttccgcatt 1160
|||||||||||| |||||||||| ||||||||
Sbjct: 471 tactgcagagaatgcccagcaacctccgcatt 440
>gb|B11159.1|B11159 F17E11-T7 IGF Arabidopsis thaliana genomic clone F17E11, DNA
sequence
Length = 1217
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 167 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 209
>gb|AQ250085.1|AQ250085 F27B9-Sp6.1 IGF Arabidopsis thaliana genomic clone F27B9, DNA
sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 160 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 202
>gb|BH240425.1|BH240425 AUINB23TF AUIN Arabidopsis thaliana genomic clone AUINB23, DNA
sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 481 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 523
>gb|T04027.1|T04027 230 AT-NHC Arabidopsis thaliana cDNA clone B77XP, mRNA sequence
Length = 330
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 204 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 246
>gb|T46267.1|T46267 9530 Lambda-PRL2 Arabidopsis thaliana cDNA clone 139I2T7, mRNA
sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 205 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 163
>gb|AV824936.1|AV824936 AV824936 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-81-C22 5',
mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 67 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 25
>gb|BU635571.1|BU635571 025E10 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 291 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 249
>gb|CA963954.1|CA963954 cATI007F10AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA,
mRNA sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.015
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaacc 841
|||||||||||| | || ||||| ||||||||||| | ||||| || || |||||||||
Sbjct: 335 tagagctggaacgcacgaccaccagcctcaatggccatgctaatgggttgatgagcaacc 276
Query: 842 gccttct 848
|| ||||
Sbjct: 275 gctttct 269
>gb|CB260178.1|CB260178 91-E011179-013-009-F24-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770F249Q 5-PRIME, mRNA sequence
Length = 617
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 454 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 412
>gb|CK119011.1|CK119011 215a02.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A02215
5-PRIME, mRNA sequence
Length = 492
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 91 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 49
>gb|AC074226.3|AC074226 Arabidopsis thaliana chromosome 1 clone IGF-F27B9, *** SEQUENCING IN
PROGRESS ***, 5 unordered pieces
Length = 341064
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 339692 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 339650
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 169164 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 169122
>gb|AY039606.1| Arabidopsis thaliana F2G19.31/F2G19.31 mRNA, complete cds
Length = 1604
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 903 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 861
>gb|AY081730.1| Arabidopsis thaliana F2G19.31/F2G19.31 mRNA, complete cds
Length = 1389
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 845 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 803
>gb|AY072130.1| Arabidopsis thaliana putative cysteine proteinase RD21A (At1g47128)
mRNA, complete cds
Length = 1656
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 905 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 863
>gb|AY133781.1| Arabidopsis thaliana clone U11707 putative cysteine proteinase
RD21A (At1g47128) mRNA, complete cds
Length = 1420
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 845 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 803
>gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete
sequence
Length = 133379
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 116049 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 116091
>dbj|D13043.1|ATHRD21A Arabidopsis thaliana rd21A gene for thiol protease, complete cds
Length = 4161
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 2798 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 2756
>dbj|AK221689.1| Arabidopsis thaliana mRNA for cysteine proteinase RD21A, complete
cds, clone: RAFL14-97-J18
Length = 1644
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 905 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 863
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 1643496 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 1643538
>ref|NM_103612.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type
peptidase AT1G47128 mRNA, complete cds
Length = 1764
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 906 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 864
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 782 tagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||||||||||| | || ||||| ||||||||||||| |||||
Sbjct: 17286566 tagagctggaacgcacgaccaccagcctcaatggcaatgctaa 17286608
>gb|T04139.1|T04139 89 Lambda-PRL2 Arabidopsis thaliana cDNA clone 20D1T7, mRNA
sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 301 atccagtagtcctttccgttctcgg 277
>gb|H37436.1|H37436 15565 Lambda-PRL2 Arabidopsis thaliana cDNA clone 181I19T7, mRNA
sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 61 atccagtagtcctttccgttctcgg 37
>gb|AY062608.1| Arabidopsis thaliana cysteine protease component of
protease-inhibitor complex (At5g43060; MMG4.7) mRNA,
complete cds
Length = 1628
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 988 atccagtagtcctttccgttctcgg 964
>gb|AY114661.1| Arabidopsis thaliana cysteine protease component of
protease-inhibitor complex (At5g43060) mRNA, complete
cds
Length = 1485
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 944 atccagtagtcctttccgttctcgg 920
>emb|AX461365.1| Sequence 294 from Patent WO0198480
Length = 2004
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 1906 atccagtagtcctttccgttctcgg 1882
>emb|AX506677.1| Sequence 1372 from Patent WO0216655
Length = 1392
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 944 atccagtagtcctttccgttctcgg 920
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4
Length = 79046
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 16255 atccagtagtcctttccgttctcgg 16279
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 15737459 atccagtagtcctttccgttctcgg 15737483
>ref|NM_123672.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type
peptidase AT5G43060 mRNA, complete cds
Length = 1675
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 987 atccagtagtcctttccgttctcgg 963
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 686 atccagtagtccttcccgttctcgg 710
|||||||||||||| ||||||||||
Sbjct: 17287544 atccagtagtcctttccgttctcgg 17287568
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 362,749
Number of Sequences: 1013581
Number of extensions: 362749
Number of successful extensions: 24234
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23749
Number of HSP's gapped (non-prelim): 485
length of query: 1264
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1244
effective length of database: 888,669,252
effective search space: 1105504549488
effective search space used: 1105504549488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)