BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|Z26115.1|Z26115 ATTS1387 Grenoble-B Arabidopsis thaliana... 46 0.007
gb|BE525356.1|BE525356 M7G1STM Arabidopsis developing seed ... 46 0.007
gb|CF651771.1|CF651771 01-L020578-066-004-A02-SP6P MPIZ-ADI... 46 0.007
gb|CF652906.1|CF652906 83-L020833-066-004-A02q-SP6P MPIZ-AD... 46 0.007
dbj|AB008271.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.007
dbj|AK118082.1| Arabidopsis thaliana At5g04885 mRNA for unk... 46 0.007
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.007
ref|NM_147836.2| Arabidopsis thaliana hydrolase, hydrolyzin... 46 0.007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.007
>gb|Z26115.1|Z26115 ATTS1387 Grenoble-B Arabidopsis thaliana cDNA clone GBGe53, mRNA
sequence
Length = 465
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 55 tgtcaagttcaccatgggtctttttgagaaccctt 89
>gb|BE525356.1|BE525356 M7G1STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M7G1 5', mRNA sequence
Length = 211
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 6 tgtcaagttcaccatgggtctttttgagaaccctt 40
>gb|CF651771.1|CF651771 01-L020578-066-004-A02-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001A024Q 5-PRIME, mRNA sequence
Length = 844
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 628 tgtcaagttcaccatgggtctttttgagaaccctt 662
>gb|CF652906.1|CF652906 83-L020833-066-004-A02q-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001A024Q 5-PRIME, mRNA sequence
Length = 927
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 628 tgtcaagttcaccatgggtctttttgagaaccctt 662
>dbj|AB008271.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUK11
Length = 79073
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 72890 tgtcaagttcaccatgggtctttttgagaaccctt 72924
>dbj|AK118082.1| Arabidopsis thaliana At5g04885 mRNA for unknown protein, complete
cds, clone: RAFL19-33-I17
Length = 2344
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 1262 tgtcaagttcaccatgggtctttttgagaaccctt 1296
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 1375627 tgtcaagttcaccatgggtctttttgagaaccctt 1375661
>ref|NM_147836.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G04885 mRNA, complete cds
Length = 2349
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 1263 tgtcaagttcaccatgggtctttttgagaaccctt 1297
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 tgtcaagttcaccatgggcctgttcgagaaccctt 77
|||||||||||||||||| || || ||||||||||
Sbjct: 1425365 tgtcaagttcaccatgggtctttttgagaaccctt 1425399
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 123,201
Number of Sequences: 1013581
Number of extensions: 123201
Number of successful extensions: 7465
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7391
Number of HSP's gapped (non-prelim): 74
length of query: 578
length of database: 908,940,872
effective HSP length: 20
effective length of query: 558
effective length of database: 888,669,252
effective search space: 495877442616
effective search space used: 495877442616
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)