BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB264345.1|CB264345 70-E014658-035-002-K17-T7R MPIZ-ADIS... 88 3e-015
gb|AF424592.1|AF424592 Arabidopsis thaliana AT4g13710/F18A5... 88 3e-015
gb|AY142013.1| Arabidopsis thaliana At4g13710/F18A5_100 mRN... 88 3e-015
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 88 3e-015
emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome ... 88 3e-015
emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosom... 88 3e-015
ref|NM_117445.1| Arabidopsis thaliana lyase/ pectate lyase ... 88 3e-015
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 88 3e-015
gb|U83622.1|ATU83622 Arabidopsis thaliana putative pectate ... 74 4e-011
gb|CF651385.1|CF651385 15-E009213w-013-001-M03-T7R MPIZ-ADI... 68 3e-009
gb|CF651386.1|CF651386 15-E021106-013-001-M03-T7R MPIZ-ADIS... 68 3e-009
gb|AV442702.1|AV442702 AV442702 Arabidopsis thaliana above-... 68 3e-009
gb|AY085026.1| Arabidopsis thaliana clone 124816 mRNA, comp... 68 3e-009
gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome II... 68 3e-009
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 68 3e-009
ref|NM_111581.2| Arabidopsis thaliana lyase/ pectate lyase ... 68 3e-009
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 68 3e-009
gb|AV822011.1|AV822011 AV822011 RAFL4 Arabidopsis thaliana ... 66 1e-008
gb|BP847118.1|BP847118 BP847118 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|AV825609.1|AV825609 AV825609 RAFL7 Arabidopsis thaliana ... 58 2e-006
gb|AV827579.1|AV827579 AV827579 RAFL9 Arabidopsis thaliana ... 58 2e-006
gb|BX839369.1|BX839369 BX839369 Arabidopsis thaliana Adult ... 58 2e-006
gb|U83621.1|ATU83621 Arabidopsis thaliana putative pectate ... 58 2e-006
gb|AF360140.1| Arabidopsis thaliana putative pectate lyase ... 58 2e-006
emb|AX505363.1| Sequence 58 from Patent WO0216655 58 2e-006
gb|AY087561.1| Arabidopsis thaliana clone 36681 mRNA, compl... 58 2e-006
emb|BX827338.1|CNS0A2E8 Arabidopsis thaliana Full-length cD... 58 2e-006
emb|BX827698.1|CNS0A3X6 Arabidopsis thaliana Full-length cD... 58 2e-006
emb|BX828337.1|CNS0A3S6 Arabidopsis thaliana Full-length cD... 58 2e-006
gb|BT020489.1| Arabidopsis thaliana At4g24780 gene, complet... 58 2e-006
emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome... 58 2e-006
emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4... 58 2e-006
emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosom... 58 2e-006
ref|NM_118611.2| Arabidopsis thaliana lyase/ pectate lyase ... 58 2e-006
gb|BX839771.1|BX839771 BX839771 Arabidopsis thaliana Adult ... 54 4e-005
gb|CK120994.1|CK120994 204p12.p1 AtM1 Arabidopsis thaliana ... 54 4e-005
gb|AY050404.1| Arabidopsis thaliana AT5g48900/K19E20_1 mRNA... 54 4e-005
gb|AY050795.1| Arabidopsis thaliana putative pectate lyase ... 54 4e-005
emb|BX832487.1|CNS09ZRC Arabidopsis thaliana Full-length cD... 54 4e-005
dbj|AB017061.1| Arabidopsis thaliana genomic DNA, chromosom... 54 4e-005
ref|NM_124267.2| Arabidopsis thaliana lyase/ pectate lyase ... 54 4e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 54 4e-005
emb|BX842145.1|CNS09YBJ Arabidopsis thaliana Full-length cD... 52 2e-004
gb|CW802380.1|CW802380 WiscDsLox477-480N10 Arabidopsis thal... 46 0.009
gb|BP855957.1|BP855957 BP855957 RAFL21 Arabidopsis thaliana... 46 0.009
gb|AY086099.1| Arabidopsis thaliana clone 21311 mRNA, compl... 46 0.009
emb|BX831295.1|CNS09ZFG Arabidopsis thaliana Full-length cD... 46 0.009
gb|CL491039.1|CL491039 SAIL_54_E04.v1 SAIL Collection Arabi... 44 0.038
gb|CW835414.1|CW835414 ET5408.Ds3.07.21.99.b.393 Arabidopsi... 44 0.038
gb|AV527181.1|AV527181 AV527181 Arabidopsis thaliana aboveg... 44 0.038
gb|CK119624.1|CK119624 211e15.p1 AtM1 Arabidopsis thaliana ... 44 0.038
gb|BP818504.1|BP818504 BP818504 RAFL19 Arabidopsis thaliana... 44 0.038
gb|BP833457.1|BP833457 BP833457 RAFL19 Arabidopsis thaliana... 44 0.038
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.038
gb|AF462797.1|AF462797 Arabidopsis thaliana At1g67750/F12A2... 44 0.038
gb|AY101535.1| Arabidopsis thaliana At1g67750/F12A21_12 mRN... 44 0.038
gb|AY088778.1| Arabidopsis thaliana clone 94849 mRNA, compl... 44 0.038
gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F... 44 0.038
gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis tha... 44 0.038
emb|CQ805742.1| Sequence 2153 from Patent WO2004035798 44 0.038
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.038
ref|NM_101064.1| Arabidopsis thaliana lyase/ pectate lyase ... 44 0.038
ref|NM_105443.3| Arabidopsis thaliana pectate lyase AT1G677... 44 0.038
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.038
emb|BX823056.1|CNS0A629 Arabidopsis thaliana Full-length cD... 42 0.15
dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.15
ref|NM_113328.2| Arabidopsis thaliana lyase/ pectate lyase ... 42 0.15
>gb|CB264345.1|CB264345 70-E014658-035-002-K17-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000K172Q 5-PRIME, mRNA sequence
Length = 634
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 71 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 130
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 131 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 190
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 191 ttcatgattgcaagcc 206
>gb|AF424592.1|AF424592 Arabidopsis thaliana AT4g13710/F18A5_100 mRNA, complete cds
Length = 1966
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 728 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 787
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 788 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 847
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 848 ttcatgattgcaagcc 863
>gb|AY142013.1| Arabidopsis thaliana At4g13710/F18A5_100 mRNA, complete cds
Length = 1413
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 608 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 667
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 668 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 727
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 728 ttcatgattgcaagcc 743
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 3877687 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 3877746
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 3877747 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 3877806
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 3877807 ttcatgattgcaagcc 3877822
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 8684456 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 8684412
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project)
Length = 118718
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 35964 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 36023
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 36024 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 36083
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 36084 ttcatgattgcaagcc 36099
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
Length = 199667
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 57056 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 57115
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 57116 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 57175
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 57176 ttcatgattgcaagcc 57191
>ref|NM_117445.1| Arabidopsis thaliana lyase/ pectate lyase AT4G13710 mRNA, complete
cds
Length = 1963
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 726 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 785
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 786 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 845
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 846 ttcatgattgcaagcc 861
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 87.7 bits (44), Expect = 3e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || ||| ||||||| || || |
Sbjct: 7964944 aggagctgatcatgaatagtttcaagaccattgatgcccgtggctccaacgtccatatag 7965003
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 7965004 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 7965063
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 7965064 ttcatgattgcaagcc 7965079
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 12771694 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 12771650
>gb|U83622.1|ATU83622 Arabidopsis thaliana putative pectate lyase (A11) gene, partial cds
Length = 851
Score = 73.8 bits (37), Expect = 4e-011
Identities = 111/136 (81%)
Strand = Plus / Plus
Query: 635 aggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||| |||||||| || ||||||||||| || | || | ||||||| || || |
Sbjct: 206 aggagctgatcatgaatagtttcaagaccattgatgcccggtgntccaacgtccatatag 265
Query: 695 ccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacgggctccaca 754
|||||||||| |||||||||||||||| |||||||| |||||||| || || || ||||
Sbjct: 266 ccaatggtgcttgcatcaccatccagtttatcaccaatgtcatcattcatggtcttcaca 325
Query: 755 tccacgactgcaagcc 770
| || || ||||||||
Sbjct: 326 ttcatgattgcaagcc 341
>gb|CF651385.1|CF651385 15-E009213w-013-001-M03-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770M031Q 5-PRIME, mRNA sequence
Length = 910
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 495 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 554
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 555 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 604
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 366 atcggatttggccgcaacgcaatcggaggccgcgacgg 403
>gb|CF651386.1|CF651386 15-E021106-013-001-M03-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770M031Q 5-PRIME, mRNA sequence
Length = 909
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 494 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 553
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 554 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 603
>gb|AV442702.1|AV442702 AV442702 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ11d05_r 5', mRNA
sequence
Length = 579
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 200 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 259
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 260 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 309
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 71 atcggatttggccgcaacgcaatcggaggccgcgacgg 108
>gb|AY085026.1| Arabidopsis thaliana clone 124816 mRNA, complete sequence
Length = 1633
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 549 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 608
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 609 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 658
>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
complete sequence
Length = 90142
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 53211 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 53152
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 53151 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 53102
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 53340 atcggatttggccgcaacgcaatcggaggccgcgacgg 53303
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 2210097 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 2210038
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 2210037 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 2209988
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 2210226 atcggatttggccgcaacgcaatcggaggccgcgacgg 2210189
Score = 42.1 bits (21), Expect = 0.15
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
||||||||||| ||||| ||||| || | || || ||||| || ||||| |||||||||
Sbjct: 8719915 atcatgaacagtttcaaaaccattgatgctcgtggtgccaatgtccacattgccaatggt 8719974
Query: 703 gcctgcatcaccatcca 719
|| ||||| || |||||
Sbjct: 8719975 gcttgcataacaatcca 8719991
>ref|NM_111581.2| Arabidopsis thaliana lyase/ pectate lyase AT3G07010 mRNA, complete
cds
Length = 1673
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 580 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 639
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 640 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 689
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 451 atcggatttggccgcaacgcaatcggaggccgcgacgg 488
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 67.9 bits (34), Expect = 3e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 2214124 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 2214065
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
|||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 2214064 agcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 2214015
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 2214253 atcggatttggccgcaacgcaatcggaggccgcgacgg 2214216
Score = 42.1 bits (21), Expect = 0.15
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
||||||||||| ||||| ||||| || | || || ||||| || ||||| |||||||||
Sbjct: 8776267 atcatgaacagtttcaaaaccattgatgctcgtggtgccaatgtccacattgccaatggt 8776326
Query: 703 gcctgcatcaccatcca 719
|| ||||| || |||||
Sbjct: 8776327 gcttgcataacaatcca 8776343
>gb|AV822011.1|AV822011 AV822011 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-19-N09 5',
mRNA sequence
Length = 679
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||||||||||| || |||||||| || || | ||| | ||||| |||||||||
Sbjct: 581 ctctggatcatcttcaaacgcgacatggttataaccttgaagcaagagctgatcatgaac 640
Query: 652 agcttcaagaccatcga 668
|||||||| ||||||||
Sbjct: 641 agcttcaaaaccatcga 657
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 452 atcggatttggccgcaacgcaatcggaggccgcgacgg 489
>gb|BP847118.1|BP847118 BP847118 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-99-G05 5',
mRNA sequence
Length = 403
Score = 61.9 bits (31), Expect = 2e-007
Identities = 92/111 (82%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctc-aaggaggagctcatcatgaa 650
||||||||||||||||| || |||||||| || || || ||| | ||||| ||||||||
Sbjct: 289 ctctggatcatcttcaaacgcgacatggttataacccttgaagcaagagctgatcatgaa 348
Query: 651 cagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
||||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 349 cagcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 399
>gb|AV825609.1|AV825609 AV825609 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-11-L06 5',
mRNA sequence
Length = 571
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 372 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 416
>gb|AV827579.1|AV827579 AV827579 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-17-C22 5',
mRNA sequence
Length = 627
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 371 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 415
>gb|BX839369.1|BX839369 BX839369 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS48ZF08 5PRIM, mRNA
sequence
Length = 915
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 353 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 397
>gb|U83621.1|ATU83621 Arabidopsis thaliana putative pectate lyase (A10) gene, partial cds
Length = 770
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 49 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 93
>gb|AF360140.1| Arabidopsis thaliana putative pectate lyase (At4g24780) mRNA,
complete cds
Length = 1645
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 371 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 415
>emb|AX505363.1| Sequence 58 from Patent WO0216655
Length = 1215
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 260 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 304
>gb|AY087561.1| Arabidopsis thaliana clone 36681 mRNA, complete sequence
Length = 1631
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 371 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 415
>emb|BX827338.1|CNS0A2E8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS41ZA07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1588
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 356 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 400
>emb|BX827698.1|CNS0A3X6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZC04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1561
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 335 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 379
>emb|BX828337.1|CNS0A3S6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH78ZB12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1599
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 356 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 400
>gb|BT020489.1| Arabidopsis thaliana At4g24780 gene, complete cds
Length = 1384
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 339 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 383
>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII
project)
Length = 125803
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 9518 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 9562
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I7 (ESSA project)
Length = 95185
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 16566 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 16522
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62
Length = 197070
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 45990 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 45946
>ref|NM_118611.2| Arabidopsis thaliana lyase/ pectate lyase AT4G24780 mRNA, complete
cds
Length = 1633
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 371 aacgccatcggtggccgtgacggtcggatctacgtggtcaccgac 415
>gb|BX839771.1|BX839771 BX839771 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS30ZE09 5PRIM, mRNA
sequence
Length = 742
Score = 54.0 bits (27), Expect = 4e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 480 cgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 319 cgccatcggtggccgtgacggtcggatctacgtggtcaccgac 361
>gb|CK120994.1|CK120994 204p12.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P12204
5-PRIME, mRNA sequence
Length = 786
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 496 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 555
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 556 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 614
>gb|AY050404.1| Arabidopsis thaliana AT5g48900/K19E20_1 mRNA, complete cds
Length = 1525
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 512 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 571
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 572 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 630
>gb|AY050795.1| Arabidopsis thaliana putative pectate lyase (At5g48900) mRNA,
complete cds
Length = 1556
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 512 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 571
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 572 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 630
>emb|BX832487.1|CNS09ZRC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZE10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1435
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 483 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 542
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 543 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 601
>dbj|AB017061.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E20
Length = 61712
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 3822 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 3881
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 3882 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 3940
>ref|NM_124267.2| Arabidopsis thaliana lyase/ pectate lyase AT5G48900 mRNA, complete
cds
Length = 1540
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 512 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 571
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 572 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 630
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 19844984 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 19845043
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| ||||||||
Sbjct: 19845044 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgcatcac 19845102
>emb|BX842145.1|CNS09YBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS76ZA05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1308
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||||||||| |||||||| || || || | | ||||| ||||||||||||
Sbjct: 196 tggatcgtcttcaagcgagacatggtgattactctaactcaagagctaatcatgaacagc 255
Query: 655 ttcaagaccatcga 668
|||||||| |||||
Sbjct: 256 ttcaagacaatcga 269
>gb|CW802380.1|CW802380 WiscDsLox477-480N10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.009
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 478 aacgccatcggcggccgtgacggcaagatctacgtggtcaccgac 522
||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct: 574 aacnccatcggtgnccgtgacggtcggatctacgtggtcaccgac 530
>gb|BP855957.1|BP855957 BP855957 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-G06 5',
mRNA sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.009
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatgg 701
||||||||||||||||| |||||||| || || || | ||| || |||||||| |||||
Sbjct: 403 atcatgaacagcttcaaaaccatcgatggtcgtggtgtcaatgttcacatcgctaatgg 461
>gb|AY086099.1| Arabidopsis thaliana clone 21311 mRNA, complete sequence
Length = 1523
Score = 46.1 bits (23), Expect = 0.009
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
|||||| |||| || || ||||||||||| || | || || || || |||||||||||
Sbjct: 512 tggatcgtctttaaacgtgacatggtcataacattaaaagaagaactaatcatgaacagt 571
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||| || ||||| || || |||| |||||| ||||| || |||||||| || |||||
Sbjct: 572 ttcaaaacaatcgatggtcgtggcgtcaacgttcacatagctaatggtgcatgtatcac 630
>emb|BX831295.1|CNS09ZFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS76ZD02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1488
Score = 46.1 bits (23), Expect = 0.009
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 643 atcatgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
||||||||||| |||| || ||||| || || |||| |||||| ||||| || ||||||
Sbjct: 548 atcatgaacagtttcagaacaatcgatggtcgtggcgtcaacgttcacatagctaatggt 607
Query: 703 gcctgcatcac 713
|| ||||||||
Sbjct: 608 gcatgcatcac 618
>gb|CL491039.1|CL491039 SAIL_54_E04.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_54_E04.v1, DNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.038
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 637 gagctcatcatgaacagcttcaagac 662
||||||||||||||||||| ||||||
Sbjct: 541 gagctcatcatgaacagctacaagac 516
>gb|CW835414.1|CW835414 ET5408.Ds3.07.21.99.b.393 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET5408, DNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.038
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 637 gagctcatcatgaacagcttcaagac 662
||||||||||||||||||| ||||||
Sbjct: 241 gagctcatcatgaacagctacaagac 266
>gb|AV527181.1|AV527181 AV527181 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ30h04R 5', mRNA
sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.038
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 463 atcggctttggccgcaacgccatcggcggccgtgacgg 500
||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 350 atcggatttggccgcaacgcaatcggaggccgcgacgg 387
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggt 620
||||||||||||||||| || ||||||||
Sbjct: 479 ctctggatcatcttcaaacgcgacatggt 507
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,033
Number of Sequences: 1013581
Number of extensions: 275033
Number of successful extensions: 18699
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17161
Number of HSP's gapped (non-prelim): 1528
length of query: 819
length of database: 908,940,872
effective HSP length: 20
effective length of query: 799
effective length of database: 888,669,252
effective search space: 710046732348
effective search space used: 710046732348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)