BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL497539.1|CL497539 SAIL_642_D06.v1 SAIL Collection Arab... 46 0.014
gb|CL475802.1|CL475802 SAIL_244_C04.v1 SAIL Collection Arab... 42 0.22
gb|BE037822.1|BE037822 AA04G12 AA Arabidopsis thaliana cDNA... 42 0.22
>gb|CL497539.1|CL497539 SAIL_642_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_642_D06.v1, DNA sequence
Length = 1551
Score = 46.1 bits (23), Expect = 0.014
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 197 ccacacacgcacgcacacatacg 219
|||||||||||||||||||||||
Sbjct: 592 ccacacacgcacgcacacatacg 614
>gb|CL475802.1|CL475802 SAIL_244_C04.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_244_C04.v1, DNA sequence
Length = 1011
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 315 tcctcccctccctcctcttct 335
|||||||||||||||||||||
Sbjct: 991 tcctcccctccctcctcttct 971
>gb|BE037822.1|BE037822 AA04G12 AA Arabidopsis thaliana cDNA 5' similar to translationally
controlled tumor protein, mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 313 tttcctcccctccctcctctt 333
|||||||||||||||||||||
Sbjct: 535 tttcctcccctccctcctctt 555
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 389,223
Number of Sequences: 1013581
Number of extensions: 389223
Number of successful extensions: 30128
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30124
Number of HSP's gapped (non-prelim): 4
length of query: 1197
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1177
effective length of database: 888,669,252
effective search space: 1045963709604
effective search space used: 1045963709604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)