BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_913526.1| unnamed protein product [Oryza sativa (jap... 97 6e-19
ref|NP_187467.1| KOB1 (KOBITO) [Arabidopsis thaliana] >gi|2... 91 3e-17
emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia] 91 4e-17
gb|ABD33320.1| IMP dehydrogenase/GMP reductase [Medicago tr... 86 2e-15
ref|NP_181676.1| N-acetyltransferase [Arabidopsis thaliana]... 78 3e-13
ref|NP_191279.3| unknown protein [Arabidopsis thaliana] >gi... 76 1e-12
emb|CAB68126.1| putative protein [Arabidopsis thaliana] 62 2e-08
ref|XP_874531.1| PREDICTED: similar to TESTOSTERONE-REGULAT... 35 2.7
>ref|NP_913526.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
dbj|BAA96586.1| putative SDL-1 protein [Oryza sativa (japonica cultivar-group)]
Length = 556
Score = 97.1 bits (240), Expect = 6e-19
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNY S
Sbjct: 241 MARDAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYES 290
>ref|NP_187467.1| KOB1 (KOBITO) [Arabidopsis thaliana]
gb|AAN33186.1| elongation defective 1 [Arabidopsis thaliana]
gb|AAG51348.1| hypothetical protein; 7436-10438 [Arabidopsis thaliana]
Length = 533
Score = 91.3 bits (225), Expect = 3e-17
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++DA MDWI+HLDTDELI+PAGAREYSLRRLLLDVP NVDMVIFPNY S
Sbjct: 231 MARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYES 280
>emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia]
Length = 529
Score = 90.9 bits (224), Expect = 4e-17
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++D MDWIIHLDTDEL+HPAGAREYSLR+LLLDVP NVDMVIFPNY S
Sbjct: 218 MARDGGMDWIIHLDTDELLHPAGAREYSLRQLLLDVPSNVDMVIFPNYES 267
>gb|ABD33320.1| IMP dehydrogenase/GMP reductase [Medicago truncatula]
Length = 521
Score = 85.5 bits (210), Expect = 2e-15
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++D+ MDWIIHLDTDELIHPAG +EYS+R+LL DVP NVDMVIFPNY S
Sbjct: 207 MARDSGMDWIIHLDTDELIHPAGTQEYSMRQLLSDVPGNVDMVIFPNYES 256
>ref|NP_181676.1| N-acetyltransferase [Arabidopsis thaliana]
gb|AAC23730.1| hypothetical protein [Arabidopsis thaliana]
Length = 991
Score = 78.2 bits (191), Expect = 3e-13
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++DA MDWI+HLDTDEL+HP+G REYSLR LL DVP +VD VIF NY S
Sbjct: 772 MARDAGMDWILHLDTDELVHPSGTREYSLRNLLRDVPADVDEVIFTNYES 821
>ref|NP_191279.3| unknown protein [Arabidopsis thaliana]
gb|AAU44493.1| hypothetical protein AT3G57200 [Arabidopsis thaliana]
gb|AAX55179.1| hypothetical protein At3g57200 [Arabidopsis thaliana]
Length = 514
Score = 76.3 bits (186), Expect = 1e-12
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
++QDA M+WIIHLDTDELIHP+G EYSLR+LL ++ +VD+VIFPNY S
Sbjct: 217 MAQDAGMEWIIHLDTDELIHPSGTHEYSLRKLLGNISADVDVVIFPNYES 266
>emb|CAB68126.1| putative protein [Arabidopsis thaliana]
Length = 439
Score = 62.0 bits (149), Expect = 2e-08
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = +2
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVD 505
++QDA M+WIIHLDTDELIHP+G EYSLR+LL ++ +VD
Sbjct: 194 MAQDAGMEWIIHLDTDELIHPSGTHEYSLRKLLGNISADVD 234
>ref|XP_874531.1| PREDICTED: similar to TESTOSTERONE-REGULATED RP2 PROTEIN (ANDROGEN
REGULATED PROTEIN RP2) [Bos taurus]
Length = 533
Score = 35.0 bits (79), Expect = 2.7
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 369 IHINVTPKYKRLYPKSCV 316
IH+ V PKYK +YPKSCV
Sbjct: 510 IHVTVLPKYKHVYPKSCV 527
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,242,993,055
Number of Sequences: 3454138
Number of extensions: 23804997
Number of successful extensions: 58673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58669
length of database: 1,185,965,366
effective HSP length: 127
effective length of database: 747,289,840
effective search space used: 86685621440
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)