BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_913526.1| unnamed protein product [Oryza sativa (jap... 97 2e-34
ref|NP_187467.1| KOB1 (KOBITO) [Arabidopsis thaliana] >gi|2... 75 8e-27
emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia] 72 2e-25
gb|ABD33320.1| IMP dehydrogenase/GMP reductase [Medicago tr... 70 1e-24
ref|NP_181676.1| N-acetyltransferase [Arabidopsis thaliana]... 69 9e-24
ref|NP_191279.3| unknown protein [Arabidopsis thaliana] >gi... 71 1e-23
emb|CAB68126.1| putative protein [Arabidopsis thaliana] 60 1e-08
gb|AAM64611.1| unknown [Arabidopsis thaliana] 34 1.1
ref|NP_565082.1| catalytic [Arabidopsis thaliana] >gi|32306... 34 1.1
gb|ABB39568.1| hypothetical protein Dde_2772 [Desulfovibrio... 32 5.6
ref|NP_198371.2| DNA binding / protein binding / zinc ion b... 32 7.3
dbj|BAB11682.1| unnamed protein product [Arabidopsis thaliana] 32 7.3
dbj|BAA98208.1| unnamed protein product [Arabidopsis thaliana] 32 7.3
ref|NP_851094.1| DNA binding / metalloendopeptidase/ protei... 32 7.3
ref|NP_197668.2| DNA binding / protein binding / zinc ion b... 32 7.3
>ref|NP_913526.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
dbj|BAA96586.1| putative SDL-1 protein [Oryza sativa (japonica cultivar-group)]
Length = 556
Score = 97.1 bits (240), Expect(2) = 2e-34
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESIQ 152
ICITGSTSAGLHQILPWLYYH VIGVSHFFL VEGEAAKPA TSVLESI+
Sbjct: 140 ICITGSTSAGLHQILPWLYYHKVIGVSHFFLFVEGEAAKPAVTSVLESIR 189
Score = 70.9 bits (172), Expect(2) = 2e-34
Identities = 37/61 (60%), Positives = 37/61 (60%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET AG FYKP YEL Q LNMEM IIM RDA MD I TD I RE
Sbjct: 207 SRIWNETWLAGFFYKPCNYELFVKQSLNMEMAIIMARDAGMDWIIHLDTDELIHPAGARE 266
Query: 331 Y 333
Y
Sbjct: 267 Y 267
>ref|NP_187467.1| KOB1 (KOBITO) [Arabidopsis thaliana]
gb|AAN33186.1| elongation defective 1 [Arabidopsis thaliana]
gb|AAG51348.1| hypothetical protein; 7436-10438 [Arabidopsis thaliana]
Length = 533
Score = 75.1 bits (183), Expect(2) = 8e-27
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL QILPW++YH V+GVS FFL VEG+AA P+ + VLESI
Sbjct: 130 ICITTSTSAGLDQILPWMFYHKVLGVSTFFLFVEGKAATPSISKVLESI 178
Score = 67.0 bits (162), Expect(2) = 8e-27
Identities = 34/61 (55%), Positives = 36/61 (59%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RDA MD I TD I RE
Sbjct: 197 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIYPAGARE 256
Query: 331 Y 333
Y
Sbjct: 257 Y 257
>emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia]
Length = 529
Score = 72.4 bits (176), Expect(2) = 2e-25
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL QILPW++YH VIGV+ F L VEG+AA P + VLESI
Sbjct: 117 ICITTSTSAGLEQILPWMFYHKVIGVTSFLLFVEGKAASPDVSKVLESI 165
Score = 64.7 bits (156), Expect(2) = 2e-25
Identities = 32/61 (52%), Positives = 35/61 (57%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RD MD I TD + RE
Sbjct: 184 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDGGMDWIIHLDTDELLHPAGARE 243
Query: 331 Y 333
Y
Sbjct: 244 Y 244
>gb|ABD33320.1| IMP dehydrogenase/GMP reductase [Medicago truncatula]
Length = 521
Score = 70.5 bits (171), Expect(2) = 1e-24
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW+YYH V+GVS F L VEG+AA P + VLE+I
Sbjct: 106 ICITTSTSAGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETI 154
Score = 64.3 bits (155), Expect(2) = 1e-24
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RD+ MD I TD I +E
Sbjct: 173 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELIHPAGTQE 232
Query: 331 Y 333
Y
Sbjct: 233 Y 233
>ref|NP_181676.1| N-acetyltransferase [Arabidopsis thaliana]
gb|AAC23730.1| hypothetical protein [Arabidopsis thaliana]
Length = 991
Score = 68.6 bits (166), Expect(2) = 9e-24
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW++YH VIGV F+L VEG AA P + VLE+I
Sbjct: 671 ICITTSTSAGLEQTLPWIFYHKVIGVETFYLFVEGTAASPNVSRVLETI 719
Score = 63.2 bits (152), Expect(2) = 9e-24
Identities = 33/61 (54%), Positives = 34/61 (55%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET FYKP YEL Q LNMEM I M RDA MD I TD + RE
Sbjct: 738 SRIWNETWLEKFFYKPCNYELFVKQNLNMEMAITMARDAGMDWILHLDTDELVHPSGTRE 797
Query: 331 Y 333
Y
Sbjct: 798 Y 798
>ref|NP_191279.3| unknown protein [Arabidopsis thaliana]
gb|AAU44493.1| hypothetical protein AT3G57200 [Arabidopsis thaliana]
gb|AAX55179.1| hypothetical protein At3g57200 [Arabidopsis thaliana]
Length = 514
Score = 70.9 bits (172), Expect(2) = 1e-23
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW+Y+H VIGVS F+L VEG+AA P + VLE+I
Sbjct: 116 ICITTSTSAGLEQTLPWIYFHKVIGVSTFYLFVEGKAASPNVSRVLETI 164
Score = 60.5 bits (145), Expect(2) = 1e-23
Identities = 31/61 (50%), Positives = 34/61 (55%)
Frame = +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I M +DA M+ I TD I E
Sbjct: 183 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAITMAQDAGMEWIIHLDTDELIHPSGTHE 242
Query: 331 Y 333
Y
Sbjct: 243 Y 243
>emb|CAB68126.1| putative protein [Arabidopsis thaliana]
Length = 439
Score = 60.5 bits (145), Expect = 1e-08
Identities = 36/84 (42%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 94 Y*LKERLQSQLXPLFLNL----FSRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
Y KE + Q F L + RIWNET + FYKP YEL Q LNMEM I M +
Sbjct: 137 YRTKELEEKQAKRYFSGLHLCGYCRIWNETWLSSFFYKPCNYELFVKQSLNMEMAITMAQ 196
Query: 262 DARMDXIXXXXTDXXIXXXXXREY 333
DA M+ I TD I EY
Sbjct: 197 DAGMEWIIHLDTDELIHPSGTHEY 220
>gb|AAM64611.1| unknown [Arabidopsis thaliana]
Length = 346
Score = 34.3 bits (77), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPWL+YH V G HFF L +G
Sbjct: 314 LPWLHYHEVAGGGHFFPLAKG 334
>ref|NP_565082.1| catalytic [Arabidopsis thaliana]
gb|AAP78930.1| At1g74300 [Arabidopsis thaliana]
gb|AAG52411.1| unknown protein; 17587-16481 [Arabidopsis thaliana]
Length = 346
Score = 34.3 bits (77), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPWL+YH V G HFF L +G
Sbjct: 314 LPWLHYHEVAGGGHFFPLAKG 334
>gb|ABB39568.1| hypothetical protein Dde_2772 [Desulfovibrio desulfuricans G20]
ref|YP_389263.1| hypothetical protein Dde_2772 [Desulfovibrio desulfuricans G20]
Length = 412
Score = 32.0 bits (71), Expect = 5.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 51 WLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESIQPHL 161
WL+YH ++G H F+L + E+A+P ++ I+ L
Sbjct: 22 WLHYHRLLGFEH-FILFDNESARPLRDTLRHHIESGL 57
>ref|NP_198371.2| DNA binding / protein binding / zinc ion binding [Arabidopsis
thaliana]
Length = 1409
Score = 31.6 bits (70), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 WPTPDSSMVVLSQCHWCFTF-LSIS*RRGC 115
WP+PD + +C WC + L+ + RRGC
Sbjct: 711 WPSPDKKEITRERCGWCHSCRLTSASRRGC 740
>dbj|BAB11682.1| unnamed protein product [Arabidopsis thaliana]
Length = 1516
Score = 31.6 bits (70), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 WPTPDSSMVVLSQCHWCFTF-LSIS*RRGC 115
WP+PD + +C WC + L+ + RRGC
Sbjct: 694 WPSPDKKEITRERCGWCHSCKLTSASRRGC 723
>dbj|BAA98208.1| unnamed protein product [Arabidopsis thaliana]
Length = 1515
Score = 31.6 bits (70), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 WPTPDSSMVVLSQCHWCFTF-LSIS*RRGC 115
WP+PD + +C WC + L+ + RRGC
Sbjct: 690 WPSPDKKEITRERCGWCHSCRLTSASRRGC 719
>ref|NP_851094.1| DNA binding / metalloendopeptidase/ protein binding / zinc ion
binding [Arabidopsis thaliana]
Length = 1576
Score = 31.6 bits (70), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 WPTPDSSMVVLSQCHWCFTF-LSIS*RRGC 115
WP+PD + +C WC + L+ + RRGC
Sbjct: 711 WPSPDKKEITRERCGWCHSCRLTSASRRGC 740
>ref|NP_197668.2| DNA binding / protein binding / zinc ion binding [Arabidopsis
thaliana]
Length = 1566
Score = 31.6 bits (70), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 WPTPDSSMVVLSQCHWCFTF-LSIS*RRGC 115
WP+PD + +C WC + L+ + RRGC
Sbjct: 694 WPSPDKKEITRERCGWCHSCKLTSASRRGC 723
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,065,402
Number of Sequences: 3454138
Number of extensions: 5567724
Number of successful extensions: 11192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11192
length of database: 1,185,965,366
effective HSP length: 92
effective length of database: 868,184,670
effective search space used: 20836432080
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)