BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995470.2.1
(744 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_921387.1| hypothetical protein similar to putative D... 111 3e-23
ref|XP_467790.1| DNA binding protein-like [Oryza sativa (ja... 103 5e-21
ref|XP_474070.1| OSJNBb0079B02.12 [Oryza sativa (japonica c... 85 2e-15
ref|NP_974372.1| transcription regulator [Arabidopsis thali... 84 5e-15
ref|NP_849712.1| transcription regulator [Arabidopsis thali... 84 5e-15
ref|NP_198802.1| DNA binding / transcription factor [Arabid... 82 2e-14
gb|AAM67002.1| DNA-binding protein-like [Arabidopsis thaliana] 82 3e-14
ref|NP_177590.1| DNA binding / transcription factor [Arabid... 81 3e-14
gb|ABB47567.1| BT004686 At1g26948 [Oryza sativa (japonica c... 81 4e-14
ref|NP_197020.1| DNA binding / transcription factor [Arabid... 79 1e-13
ref|NP_190355.2| DNA binding / transcription factor [Arabid... 71 4e-11
emb|CAB41854.1| hypothetical protein [Arabidopsis thaliana] 71 5e-11
gb|ABD32218.1| Helix-loop-helix DNA-binding [Medicago trunc... 62 2e-08
gb|ABA94608.1| expressed protein [Oryza sativa (japonica cu... 60 1e-07
emb|CAH90526.1| hypothetical protein [Pongo pygmaeus] 36 1.7
ref|XP_900159.1| PREDICTED: similar to upstream stimulatory... 36 1.7
gb|AAX36097.1| upstream transcription factor 1 [synthetic c... 35 2.2
ref|NP_001001161.1| upstream stimulatory factor 1 [Bos taur... 35 2.2
emb|CAA64627.1| USF1 protein [Mus musculus] 35 2.2
ref|NP_033506.1| upstream stimulatory factor 1 [Mus musculu... 35 2.2
emb|CAI15372.1| upstream transcription factor 1 [Homo sapie... 35 2.2
ref|NP_113965.1| upstream stimulatory factor 1 [Rattus norv... 35 2.2
ref|XP_545763.2| PREDICTED: similar to Upstream stimulatory... 35 2.2
sp|O02818|USF1_RABIT Upstream stimulatory factor 1 (Major l... 35 2.2
gb|AAH49784.1| Usf1 protein [Mus musculus] 35 2.2
gb|AAL87134.1| upstream transcription factor 1 short form [... 35 2.2
ref|NP_996888.1| upstream stimulatory factor 1 isoform 2 [H... 35 2.2
ref|XP_513931.1| PREDICTED: upstream stimulatory factor 1 [... 35 2.2
ref|XP_860594.1| PREDICTED: similar to Upstream stimulatory... 35 2.2
ref|XP_860559.1| PREDICTED: similar to Upstream stimulatory... 35 2.2
emb|CAI15371.1| upstream transcription factor 1 [Homo sapiens] 35 2.2
gb|AAC48765.1| upstream stimulatory factor 1b; rUSF1b [Oryc... 35 2.2
gb|AAV52917.1| upstream stimulatory factor 1 [Gallus gallus... 35 3.7
dbj|BAE06746.1| transcription factor protein [Ciona intesti... 35 3.7
gb|AAM27409.1| RIP defective [Neurospora intermedia] 33 8.2
>ref|NP_921387.1| hypothetical protein similar to putative DNA binding proteins
[Oryza sativa (japonica cultivar-group)]
gb|AAM74282.1| Hypothetical protein similar to putative DNA binding proteins
[Oryza sativa (japonica cultivar-group)]
gb|AAP53674.1| hypothetical protein LOC_Os10g26410 [Oryza sativa (japonica
cultivar-group)]
Length = 88
Score = 111 bits (277), Expect = 3e-23
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Frame = +2
Query: 86 GRR--GRISDDEINELISKLQALLPEXXXXXXXXXXX-XXKLLKETCAYVKSLHREVDDL 256
GRR GRI+DDEINELISKLQ+LLPE KLLKE C+Y+KSLHREVDDL
Sbjct: 3 GRRASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKSLHREVDDL 62
Query: 257 SERLSGLMATMDNDSPQAEIIRSLLR 334
SERLS LMATMD++SPQA+IIRSLLR
Sbjct: 63 SERLSELMATMDSNSPQADIIRSLLR 88
>ref|XP_467790.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
dbj|BAD16450.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
Length = 88
Score = 103 bits (258), Expect = 5e-21
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = +2
Query: 92 RGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLS 271
RG IS++EINELISKLQ+LLP KLLKETC Y+KSLHREVDDLS+RLS
Sbjct: 8 RGSISEEEINELISKLQSLLPNSRRRGSSQASTT-KLLKETCNYIKSLHREVDDLSDRLS 66
Query: 272 GLMATMDNDSPQAEIIRSLLR 334
LMATMD++SP AEIIRS+LR
Sbjct: 67 DLMATMDHNSPGAEIIRSILR 87
>ref|XP_474070.1| OSJNBb0079B02.12 [Oryza sativa (japonica cultivar-group)]
emb|CAE05966.1| OSJNBa0063C18.7 [Oryza sativa (japonica cultivar-group)]
emb|CAD41853.2| OSJNBb0079B02.12 [Oryza sativa (japonica cultivar-group)]
emb|CAC09463.1| putative DNA binding protein [Oryza sativa (indica cultivar-group)]
Length = 104
Score = 85.1 bits (209), Expect = 2e-15
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 77 SSGGRRGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDL 256
SS R IS+D+I EL+SKLQALLPE ++L+ETC+Y++SLH+EVD+L
Sbjct: 19 SSSSSRTSISEDQIAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNL 78
Query: 257 SERLSGLMATMDNDSPQAEIIRSLL 331
SE L+ L+A+ D S QA +IRSLL
Sbjct: 79 SETLAQLLASPDVTSDQAAVIRSLL 103
>ref|NP_974372.1| transcription regulator [Arabidopsis thaliana]
gb|ABD57465.1| At3g28857 [Arabidopsis thaliana]
dbj|BAB02128.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 84.0 bits (206), Expect = 5e-15
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD++ +L+SKL+ LPE K+L+ETC Y++ LHREVD+LS+RLS L
Sbjct: 14 RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LDSVDEDSPEAAVIRSLL 91
>ref|NP_849712.1| transcription regulator [Arabidopsis thaliana]
gb|AAO42932.1| At1g26948 [Arabidopsis thaliana]
dbj|BAC43682.1| unknown protein [Arabidopsis thaliana]
Length = 94
Score = 84.0 bits (206), Expect = 5e-15
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD+I++L+SKLQ L+PE K+L+ETC Y+++LHREVDDLS+RLS L
Sbjct: 16 RISDDQISDLVSKLQHLIPELRRRRSDKVSAS-KVLQETCNYIRNLHREVDDLSDRLSEL 74
Query: 278 MATMDNDSPQAEIIRSLL 331
+A+ D++S +A IIRSLL
Sbjct: 75 LASTDDNSAEAAIIRSLL 92
>ref|NP_198802.1| DNA binding / transcription factor [Arabidopsis thaliana]
gb|AAM65786.1| DNA-binding protein-like [Arabidopsis thaliana]
dbj|BAB10210.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/78 (50%), Positives = 58/78 (74%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISD+++ +L+SKL+ +LPE K+L+ETC Y+++L+REVD+LSERLS L
Sbjct: 14 RISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LESVDEDSPEAAVIRSLL 91
>gb|AAM67002.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 81.6 bits (200), Expect = 3e-14
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD++ +L+SKL+ LPE +L+ETC Y++ LHREVD+LS+RLS L
Sbjct: 14 RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASXVLQETCNYIRKLHREVDNLSDRLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LDSVDEDSPEAAVIRSLL 91
>ref|NP_177590.1| DNA binding / transcription factor [Arabidopsis thaliana]
gb|AAM65825.1| putative DNA-binding protein [Arabidopsis thaliana]
gb|AAG52350.1| putative DNA-binding protein; 54988-54618 [Arabidopsis thaliana]
gb|AAO23611.1| At1g74500 [Arabidopsis thaliana]
Length = 93
Score = 81.3 bits (199), Expect = 3e-14
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RIS+D+IN+LI KLQ LLPE ++L++TC Y+++LHREVDDLSERLS L
Sbjct: 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75
Query: 278 MATMDNDSPQAEIIRSLL 331
+A ++D+ QA +IRSLL
Sbjct: 76 LA--NSDTAQAALIRSLL 91
>gb|ABB47567.1| BT004686 At1g26948 [Oryza sativa (japonica cultivar-group)]
Length = 91
Score = 80.9 bits (198), Expect = 4e-14
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +2
Query: 77 SSGGRRGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDL 256
S RI+D++I +L+SKLQALLPE ++L+ETC+Y++SLHREVDDL
Sbjct: 7 SRASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSA-RVLQETCSYIRSLHREVDDL 65
Query: 257 SERLSGLMATMDNDSPQAEIIRSLL 331
SERL+ L+A D + QA +IR LL
Sbjct: 66 SERLAELLAAADVSTAQAAVIRGLL 90
>ref|NP_197020.1| DNA binding / transcription factor [Arabidopsis thaliana]
emb|CAB89326.1| putative protein [Arabidopsis thaliana]
gb|AAO63880.1| putative bHLH protein [Arabidopsis thaliana]
dbj|BAC43472.1| unknown protein [Arabidopsis thaliana]
Length = 94
Score = 79.3 bits (194), Expect = 1e-13
Identities = 37/78 (47%), Positives = 56/78 (71%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD+I +LISKL+ +PE K+L+ETC Y+++L++E DDLS+RL+ L
Sbjct: 15 RISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQL 74
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D +SPQA +IRSL+
Sbjct: 75 LESIDPNSPQAAVIRSLI 92
>ref|NP_190355.2| DNA binding / transcription factor [Arabidopsis thaliana]
Length = 92
Score = 71.2 bits (173), Expect = 4e-11
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
Frame = +2
Query: 74 MSSGGRRGR------ISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSL 235
MSS R R I+D++IN+L+ +L LLPE ++L+ETC+Y+++L
Sbjct: 1 MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL 60
Query: 236 HREVDDLSERLSGLMATMDNDSPQAEIIRSLL 331
+EVDDLSERLS L+ + DS QA +IRSLL
Sbjct: 61 SKEVDDLSERLSQLLES--TDSAQAALIRSLL 90
>emb|CAB41854.1| hypothetical protein [Arabidopsis thaliana]
Length = 78
Score = 70.9 bits (172), Expect = 5e-11
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = +2
Query: 101 ISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGLM 280
I+D++IN+L+ +L LLPE ++L+ETC+Y+++L +EVDDLSERLS L+
Sbjct: 2 ITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLL 61
Query: 281 ATMDNDSPQAEIIRSLL 331
+ DS QA +IRSLL
Sbjct: 62 ES--TDSAQAALIRSLL 76
>gb|ABD32218.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 53
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 197 KLLKETCAYVKSLHREVDDLSERLSGLMATMDNDSPQAEIIRSLL 331
K+L+ETC Y+++L REVDDLS RLS L+AT+D+DS +A IIRSLL
Sbjct: 7 KVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 51
>gb|ABA94608.1| expressed protein [Oryza sativa (japonica cultivar-group)]
Length = 101
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = +2
Query: 104 SDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGLMA 283
+D+++ ELISKLQA+LP ++L+E C Y++ LHRE D LSERL+ L+
Sbjct: 20 TDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHREADALSERLAELLL 79
Query: 284 TMDND-----SPQAEIIRSLL 331
+D + ++IRSLL
Sbjct: 80 LQPSDLAINGADVPDLIRSLL 100
>emb|CAH90526.1| hypothetical protein [Pongo pygmaeus]
Length = 310
Score = 35.8 bits (81), Expect = 1.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSTESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>ref|XP_900159.1| PREDICTED: similar to upstream stimulatory factor 1 [Mus musculus]
ref|XP_923235.1| PREDICTED: similar to upstream stimulatory factor 1 [Mus musculus]
Length = 148
Score = 35.8 bits (81), Expect = 1.7
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 51 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 110
Query: 287 MDND--SPQAEIIRSLLR*LQVQV 352
+DND Q E +++ LQ Q+
Sbjct: 111 LDNDVLRQQVEDLKNKNLPLQAQL 134
>gb|AAX36097.1| upstream transcription factor 1 [synthetic construct]
Length = 311
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>ref|NP_001001161.1| upstream stimulatory factor 1 [Bos taurus]
gb|AAP43041.1| upstream stimulatory factor 1 [Bos taurus]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>emb|CAA64627.1| USF1 protein [Mus musculus]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>ref|NP_033506.1| upstream stimulatory factor 1 [Mus musculus]
dbj|BAE25064.1| unnamed protein product [Mus musculus]
sp|Q61069|USF1_MOUSE Upstream stimulatory factor 1 (Major late transcription factor 1)
gb|AAC52921.1| MMUSF
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>emb|CAI15372.1| upstream transcription factor 1 [Homo sapiens]
gb|AAS89301.1| upstream transcription factor 1 [Homo sapiens]
gb|AAH35505.1| Upstream stimulatory factor 1, isoform 1 [Homo sapiens]
ref|NP_009053.1| upstream stimulatory factor 1 isoform 1 [Homo sapiens]
gb|AAX42529.1| upstream transcription factor 1 [synthetic construct]
sp|P22415|USF1_HUMAN Upstream stimulatory factor 1 (Major late transcription factor 1)
dbj|BAA76541.1| USF1 [Homo sapiens]
emb|CAA39201.1| upstream stimulatory factor [Homo sapiens]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>ref|NP_113965.1| upstream stimulatory factor 1 [Rattus norvegicus]
gb|AAB82712.1| transcription factor USF-1 [Rattus norvegicus]
gb|AAH88849.1| Upstream stimulatory factor 1 [Rattus norvegicus]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>ref|XP_545763.2| PREDICTED: similar to Upstream stimulatory factor 1 (Major late
transcription factor 1) isoform 1 [Canis familiaris]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sp|O02818|USF1_RABIT Upstream stimulatory factor 1 (Major late transcription factor 1)
gb|AAC48764.1| upstream stimulatory factor 1a; rUSF1a [Oryctolagus cuniculus]
Length = 310
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>gb|AAH49784.1| Usf1 protein [Mus musculus]
Length = 296
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>gb|AAL87134.1| upstream transcription factor 1 short form [Mus musculus]
Length = 251
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 154 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 213
Query: 287 MDND 298
+DND
Sbjct: 214 LDND 217
>ref|NP_996888.1| upstream stimulatory factor 1 isoform 2 [Homo sapiens]
dbj|BAC78384.1| upstream stimulatory factor 1 BD [Homo sapiens]
Length = 251
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 154 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 213
Query: 287 MDND 298
+DND
Sbjct: 214 LDND 217
>ref|XP_513931.1| PREDICTED: upstream stimulatory factor 1 [Pan troglodytes]
Length = 400
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 303 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 362
Query: 287 MDND 298
+DND
Sbjct: 363 LDND 366
>ref|XP_860594.1| PREDICTED: similar to Upstream stimulatory factor 1 (Major late
transcription factor 1) isoform 3 [Canis familiaris]
Length = 251
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 154 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 213
Query: 287 MDND 298
+DND
Sbjct: 214 LDND 217
>ref|XP_860559.1| PREDICTED: similar to Upstream stimulatory factor 1 (Major late
transcription factor 1) isoform 2 [Canis familiaris]
Length = 287
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 190 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 249
Query: 287 MDND 298
+DND
Sbjct: 250 LDND 253
>emb|CAI15371.1| upstream transcription factor 1 [Homo sapiens]
Length = 282
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 185 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 244
Query: 287 MDND 298
+DND
Sbjct: 245 LDND 248
>gb|AAC48765.1| upstream stimulatory factor 1b; rUSF1b [Oryctolagus cuniculus]
Length = 282
Score = 35.4 bits (80), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 185 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 244
Query: 287 MDND 298
+DND
Sbjct: 245 LDND 248
>gb|AAV52917.1| upstream stimulatory factor 1 [Gallus gallus]
ref|NP_001007486.1| upstream stimulatory factor 1 [Gallus gallus]
Length = 310
Score = 34.7 bits (78), Expect = 3.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMENTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
MDN+
Sbjct: 273 MDNE 276
>dbj|BAE06746.1| transcription factor protein [Ciona intestinalis]
Length = 325
Score = 34.7 bits (78), Expect = 3.7
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSG----- 274
D IN I KL L+P+ +L +TC Y+ L LS+R+ G
Sbjct: 221 DRINNWIMKLSKLVPDCQGDHTKQGQSKGGILSKTCEYILDLQSSNQRLSDRMKGYERLQ 280
Query: 275 -----LMATMDNDSPQAEIIRSLLR 334
L M+ + I+R +L+
Sbjct: 281 LDYEVLRVQMEEKKQENNILRQMLQ 305
>gb|AAM27409.1| RIP defective [Neurospora intermedia]
Length = 839
Score = 33.5 bits (75), Expect = 8.2
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 218 AYVKSLHREVDDLSERLSGLMATMDNDSPQAEIIRSLLR*LQVQVPAMPLAAPVVRR--A 391
A ++ + V DL E +S L+ +D D + +R V+V A P +PV RR A
Sbjct: 661 AAAQAKQKTVIDLDEDISNLVLDLDQDRDDDRSDTATIRESSVEVEASPRVSPVRRRHPA 720
Query: 392 RPPS 403
PPS
Sbjct: 721 APPS 724
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,243,778,387
Number of Sequences: 3454138
Number of extensions: 19433221
Number of successful extensions: 76744
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 74004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76723
length of database: 1,185,965,366
effective HSP length: 127
effective length of database: 747,289,840
effective search space used: 89674780800
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)