BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_468522.1| replication protein A2 [Oryza sativa (japo... 377 e-103
dbj|BAB40535.1| replication protein A 30kDa [Oryza sativa (... 372 e-101
ref|XP_466911.1| putative replication protein A2 [Oryza sat... 191 7e-47
emb|CAJ13715.1| putative replication factor A [Capsicum chi... 176 2e-42
gb|AAP58374.1| RPA 32kDa [Pisum sativum] 175 4e-42
ref|NP_565571.1| nucleic acid binding [Arabidopsis thaliana... 173 1e-41
ref|NP_566188.1| nucleic acid binding [Arabidopsis thaliana... 148 5e-34
gb|AAF26967.1| putative replication factor A [Arabidopsis t... 145 3e-33
dbj|BAD53865.1| putative replication protein A2 [Oryza sati... 129 2e-28
gb|EAL21502.1| hypothetical protein CNBD1960 [Cryptococcus ... 113 2e-23
ref|XP_758726.1| hypothetical protein UM02579.1 [Ustilago m... 102 3e-20
ref|NP_001026063.1| replication protein A2, 32kDa [Gallus g... 101 6e-20
sp|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (... 97 1e-18
ref|NP_035414.2| replication protein A2 [Mus musculus] >gi|... 96 4e-18
gb|AAH76661.1| Replication protein A2, 32kDa [Xenopus tropi... 95 5e-18
dbj|BAE41408.1| unnamed protein product [Mus musculus] >gi|... 95 5e-18
dbj|BAD69790.1| Replication protein A middle subunit [Bomby... 95 7e-18
emb|CAA67116.1| p32-subunit of replication protein A [Rattu... 94 1e-17
ref|NP_067593.1| replication protein A2 [Rattus norvegicus]... 94 1e-17
gb|AAH95005.1| Rpa2 protein [Danio rerio] 92 4e-17
gb|AAH72101.1| MGC79017 protein [Xenopus laevis] 92 6e-17
gb|AAT08661.1| single-stranded DNA-binding replication prot... 91 1e-16
gb|AAW43367.1| conserved hypothetical protein [Cryptococcus... 91 1e-16
gb|AAH21257.1| Replication protein A2, 32kDa [Homo sapiens]... 89 4e-16
emb|CAI21778.1| replication protein A2, 32kDa [Homo sapiens] 89 4e-16
emb|CAI21775.1| replication protein A2, 32kDa [Homo sapiens] 89 4e-16
ref|XP_714857.1| hypothetical protein CaO19.2267 [Candida a... 89 5e-16
ref|XP_544465.2| PREDICTED: similar to Replication protein ... 87 1e-15
emb|CAH90667.1| hypothetical protein [Pongo pygmaeus] >gi|6... 87 1e-15
ref|XP_389900.1| hypothetical protein FG09724.1 [Gibberella... 87 2e-15
ref|XP_610985.2| PREDICTED: similar to Replication protein ... 86 3e-15
emb|CAA22775.1| ssb2 [Schizosaccharomyces pombe] >gi|630544... 86 3e-15
emb|CAA21823.1| ssb2 [Schizosaccharomyces pombe] 86 4e-15
gb|AAW25942.1| SJCHGC02904 protein [Schistosoma japonicum] 85 6e-15
ref|XP_658186.1| hypothetical protein AN0582.2 [Aspergillus... 85 7e-15
ref|XP_584610.2| PREDICTED: similar to Replication protein ... 85 7e-15
gb|AAI12730.1| Unknown (protein for MGC:137236) [Bos taurus] 85 7e-15
gb|AAL90389.1| RH07841p [Drosophila melanogaster] 84 1e-14
ref|NP_610077.1| CG9273-PA [Drosophila melanogaster] >gi|17... 84 1e-14
gb|EAL33908.1| GA21663-PA [Drosophila pseudoobscura] 83 3e-14
gb|EAQ88020.1| hypothetical protein CHGG_04639 [Chaetomium ... 81 1e-13
dbj|BAE59043.1| unnamed protein product [Aspergillus oryzae] 81 1e-13
gb|AAG12435.1| replication protein A [Danio rerio] >gi|1885... 80 2e-13
ref|XP_873600.1| PREDICTED: similar to Replication protein ... 79 3e-13
emb|CAG89788.1| unnamed protein product [Debaryomyces hanse... 79 4e-13
emb|CAD37148.1| possible replication factor-a protein [Aspe... 78 9e-13
ref|XP_750997.1| hypothetical protein Afu6g11130 [Aspergill... 77 1e-12
ref|XP_961967.1| hypothetical protein [Neurospora crassa N1... 77 2e-12
gb|AAS51744.1| ADL176Wp [Ashbya gossypii ATCC 10895] >gi|45... 77 2e-12
ref|XP_454281.1| unnamed protein product [Kluyveromyces lac... 76 3e-12
emb|CAG62496.1| unnamed protein product [Candida glabrata C... 74 1e-11
emb|CAA96241.1| RFA2 [Saccharomyces cerevisiae] >gi|4314|em... 73 3e-11
emb|CAI21776.1| replication protein A2, 32kDa [Homo sapiens] 70 2e-10
ref|XP_513251.1| PREDICTED: hypothetical protein XP_513251 ... 70 2e-10
ref|NP_585792.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBU... 70 2e-10
gb|EAA43853.2| ENSANGP00000023457 [Anopheles gambiae str. P... 69 5e-10
gb|EAA12428.2| ENSANGP00000018307 [Anopheles gambiae str. P... 69 5e-10
pdb|1QUQ|C Chain C, Complex Of Replication Protein A Subuni... 67 1e-09
pdb|1L1O|E Chain E, Structure Of The Human Replication Prot... 67 2e-09
ref|XP_504973.1| hypothetical protein [Yarrowia lipolytica]... 57 1e-06
gb|AAI04014.1| Replication protein A4, 34kDa [Homo sapiens]... 56 3e-06
gb|AAX79127.1| replication Factor A 28 kDa subunit, putativ... 55 6e-06
ref|XP_807521.1| replication Factor A 28 kDa subunit [Trypa... 53 3e-05
ref|XP_529067.1| PREDICTED: similar to diaphanous 2 isoform... 49 3e-04
emb|CAI74950.1| hypothetical protein [Theileria annulata] >... 47 0.002
ref|XP_764591.1| hypothetical protein TP02_0022 [Theileria ... 45 0.005
ref|XP_508712.1| PREDICTED: similar to contactin 5 isoform ... 42 0.042
gb|AAK71380.1| Hypothetical protein M04F3.1 [Caenorhabditis... 42 0.054
emb|CAJ03255.1| replication Factor A 28 kDa subunit, putati... 42 0.054
ref|ZP_00566317.1| Acriflavin resistance protein [Methyloba... 42 0.054
emb|CAA80683.1| 28 kilodalton subunit of replication protei... 42 0.054
emb|CAI21774.1| replication protein A2, 32kDa [Homo sapiens] 40 0.16
ref|XP_544897.2| PREDICTED: similar to ankyrin repeat domai... 40 0.21
ref|XP_585478.2| PREDICTED: similar to ankyrin repeat domai... 39 0.60
ref|XP_880279.1| PREDICTED: similar to ankyrin repeat domai... 39 0.60
ref|XP_880207.1| PREDICTED: similar to ankyrin repeat domai... 39 0.60
ref|XP_880048.1| PREDICTED: similar to ankyrin repeat domai... 39 0.60
ref|XP_421742.1| PREDICTED: similar to oligonucleotide/olig... 38 1.0
ref|XP_592025.2| PREDICTED: similar to oligonucleotide/olig... 37 1.8
emb|CAF91030.1| unnamed protein product [Tetraodon nigrovir... 37 1.8
ref|XP_599031.2| PREDICTED: similar to Tripartite motif pro... 37 2.3
gb|EAQ92258.1| predicted protein [Chaetomium globosum CBS 1... 37 2.3
gb|AAZ80925.1| 32kDa replication protein A2 [Macaca mulatta] 37 2.3
pdb|1Z1D|A Chain A, Structural Model For The Interaction Be... 37 2.3
pdb|1DPU|A Chain A, Solution Structure Of The C-Terminal Do... 37 2.3
ref|NP_563781.1| unknown protein [Arabidopsis thaliana] >gi... 36 3.0
gb|AAG20014.1| Vng1794c [Halobacterium sp. NRC-1] >gi|15790... 35 6.7
gb|AAP37459.1| replication protein A2; CpRPA2 [Cryptosporid... 35 6.7
ref|XP_665492.1| replication protein A2; CpRPA2 [Cryptospor... 35 6.7
ref|XP_626589.1| RP-A, OB fold single strand binding protei... 35 6.7
ref|XP_758987.1| hypothetical protein UM02840.1 [Ustilago m... 35 6.7
>ref|XP_468522.1| replication protein A2 [Oryza sativa (japonica cultivar-group)]
emb|CAC03572.1| replication protein A2 [Oryza sativa]
dbj|BAD22936.1| replication protein A2 [Oryza sativa (japonica cultivar-group)]
Length = 279
Score = 377 bits (968), Expect = e-103
Identities = 193/276 (69%), Positives = 226/276 (81%), Gaps = 4/276 (1%)
Frame = +2
Query: 80 MMPLSQTD-FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG-TGDKGAP 253
MM SQ D FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG TG+KGAP
Sbjct: 1 MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F+V+GVE AN+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRWVND +DS ETAA+QNGM
Sbjct: 61 FVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSM 613
Y++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + + GSPA+ S+M
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAM 180
Query: 614 GVSFSNGFXXXXXXXXXXXXXAPVTS--GSSDTDLHTQVLNFFNEPANLESEHGVHVDEV 787
G S SNGF APV S S TDL+T+VLN F EPAN+ESEHGVH+DE+
Sbjct: 181 GSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEI 240
Query: 788 LKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+KRF+ LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 241 VKRFR-LPEAKIKVAIDYLADIGHIYSTIDESHYKS 275
>dbj|BAB40535.1| replication protein A 30kDa [Oryza sativa (japonica
cultivar-group)]
Length = 279
Score = 372 bits (956), Expect = e-101
Identities = 191/276 (69%), Positives = 224/276 (81%), Gaps = 4/276 (1%)
Frame = +2
Query: 80 MMPLSQTD-FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG-TGDKGAP 253
MM SQ D FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG TG+KGAP
Sbjct: 1 MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F+V+GVE AN+RLVG+V+ K ER TDV+F +DDGTGRLDFIRWVND +DS ETAA+QNGM
Sbjct: 61 FVVDGVETANVRLVGLVSGKTERNTDVSFMIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSM 613
Y++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + + GSPA+ S+M
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAM 180
Query: 614 GVSFSNGFXXXXXXXXXXXXXAPVTS--GSSDTDLHTQVLNFFNEPANLESEHGVHVDEV 787
G S SNGF APV S S TDL+T+VLN F EPAN+ESEHGVH+DE+
Sbjct: 181 GSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEI 240
Query: 788 LKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+KR + LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 241 VKRLR-LPEAKIKVAIDYLADIGHIYSTIDESHYKS 275
>ref|XP_466911.1| putative replication protein A2 [Oryza sativa (japonica
cultivar-group)]
dbj|BAD25304.1| putative replication protein A2 [Oryza sativa (japonica
cultivar-group)]
Length = 298
Score = 191 bits (484), Expect = 7e-47
Identities = 112/278 (40%), Positives = 165/278 (59%), Gaps = 13/278 (4%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPS-----KMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNG 268
F PSQ T+ AA+ T+ K R A + +PLTVKQ++DA Q T D + F VNG
Sbjct: 30 FMPSQATN----AAEGTSGGGGGFPKSRNAQALLPLTVKQIMDASQ--TNDDKSNFAVNG 83
Query: 269 VEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVI 448
+E++ +RLVG + K++R TDV+FTLDDGTGR+ RW ND++D+ E A IQNG Y+ V
Sbjct: 84 MEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKEMADIQNGDYVIVN 143
Query: 449 GSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIE--------NIELKAGSPARIS 604
G LKG Q +++ A+S+R IT+FN+VT HF+ CV +H+E N G+P +
Sbjct: 144 GGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATGTPNQTM 203
Query: 605 SSMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDE 784
++++ AP +G+ T++ VLN F++PA + +HGV VD
Sbjct: 204 PRDSMAYNQ----SPLTNQASTFSAPQNTGTG-TNMIDLVLNVFHDPAVMNDDHGVGVDY 258
Query: 785 VLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
V +R LP++ + I +D G LY+TID+ HYK+T
Sbjct: 259 VSRRLN-LPEETVGKIIIDQVDLGHLYATIDDHHYKST 295
>emb|CAJ13715.1| putative replication factor A [Capsicum chinense]
Length = 299
Score = 176 bits (445), Expect = 2e-42
Identities = 99/265 (37%), Positives = 156/265 (58%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F PSQ T Q A+ S +P+K R + + +PLTVKQ+ +A QS D F+++GV++ N
Sbjct: 38 FMPSQAT--QTASDHSFSPTKNRDSQTLIPLTVKQISEAFQSS--DDKTNFLIDGVDVNN 93
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
++LVG++ K E T V+F +DDGTGRLD RWVN+A D+ E A+ NG+Y+ V G LKG
Sbjct: 94 VKLVGILFNKAEMLTAVSFVVDDGTGRLDCFRWVNEAVDTKEMEALTNGIYVRVHGHLKG 153
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
Q +K+ A+S+RP+ D+NE+ HF + + +H N L+ + S+ V S+
Sbjct: 154 FQGKKQLMAYSVRPVDDYNEIASHFAEVIYVHSYNSRLRKQQDSSFMSAQ-VPSSSFNTP 212
Query: 644 XXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQI 823
P + +H VL++ +P+ L E GVH +E+ ++ + +P ++I
Sbjct: 213 LKGYQASASNQFPGFNMDGIGGVHKMVLDYLQQPSCLALEKGVHRNELAQQLR-VPSEKI 271
Query: 824 TDAIDYNMDSGRLYSTIDEFHYKAT 898
A++ G +YSTID+FHYK+T
Sbjct: 272 MGAMEALESEGLVYSTIDDFHYKST 296
>gb|AAP58374.1| RPA 32kDa [Pisum sativum]
Length = 273
Score = 175 bits (443), Expect = 4e-42
Identities = 104/273 (38%), Positives = 149/273 (54%), Gaps = 6/273 (2%)
Frame = +2
Query: 92 SQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGV 271
S FS FTSSQ S P+K R + +P+TVKQ+ +A QSG D+ + F +NGV
Sbjct: 9 SSNAFSGGGFTSSQ-LNESSPAPTKSRDSQGLVPVTVKQISEASQSG--DEKSNFAINGV 65
Query: 272 EMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIG 451
++ N+ LVGMV K ER TDV F LDDGTGR+ RWVN+ DS E + N MY+ V G
Sbjct: 66 DLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNETFDSKEMEEVSNDMYVRVYG 125
Query: 452 SLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSN 631
+LK Q K+ AFS+RP+T+F+E+ HFI C+ H+ G+P+ +N
Sbjct: 126 NLKSFQGVKQLGAFSVRPVTNFDEIPFHFIDCIHSHLLAKVKLEGTPSTYPP------TN 179
Query: 632 GFXXXXXXXXXXXXXAPVTSG----SSD--TDLHTQVLNFFNEPANLESEHGVHVDEVLK 793
AP G S+D D V+++ + +++ E G+HV+E+ +
Sbjct: 180 SSINTPVKSALNGSQAPSNPGYTQYSTDGLEDCDKLVIDYLQQHSSMLDERGIHVEELAR 239
Query: 794 RFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
K LP +I ++ D G +YSTID+ HYK
Sbjct: 240 ELK-LPLDRIRLSVKALEDDGLVYSTIDDSHYK 271
>ref|NP_565571.1| nucleic acid binding [Arabidopsis thaliana]
gb|AAD18120.2| putative replication protein A1 [Arabidopsis thaliana]
gb|AAM66059.1| putative replication protein A1 [Arabidopsis thaliana]
gb|AAO63853.1| putative replication protein A1 [Arabidopsis thaliana]
dbj|BAC42198.1| putative replication protein A1 [Arabidopsis thaliana]
gb|ABB86293.1| DNA replication protein A2 subunit [Arabidopsis thaliana]
Length = 279
Score = 173 bits (439), Expect = 1e-41
Identities = 91/266 (34%), Positives = 152/266 (57%), Gaps = 3/266 (1%)
Frame = +2
Query: 104 FSPSQFTSSQNAAA--DSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEM 277
FS F SSQ + A S++ +K R +P+TVKQ+ + QS +G+K ++NG+ +
Sbjct: 13 FSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQS-SGEKSG-LVINGISL 70
Query: 278 ANIRLVGMVNAKVE-RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGS 454
N+ LVG+V K E + T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G
Sbjct: 71 TNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGH 130
Query: 455 LKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNG 634
LK Q + + FS+RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G
Sbjct: 131 LKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGG 190
Query: 635 FXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPK 814
+ G+ +L +L++ +PA + G+H+DE+ ++ K +PK
Sbjct: 191 SNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLK-IPK 249
Query: 815 KQITDAIDYNMDSGRLYSTIDEFHYK 892
++ + G +YSTIDE+H+K
Sbjct: 250 NKLEGVVQSLEGDGLIYSTIDEYHFK 275
>ref|NP_566188.1| nucleic acid binding [Arabidopsis thaliana]
gb|AAM61372.1| putative replication factor A [Arabidopsis thaliana]
dbj|BAC42439.1| putative replication factor A [Arabidopsis thaliana]
Length = 278
Score = 148 bits (373), Expect = 5e-34
Identities = 84/267 (31%), Positives = 147/267 (55%), Gaps = 2/267 (0%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F PSQ T+ A +S++ K R + +PLT+KQ+ A +G + F ++GV++
Sbjct: 17 FMPSQATTQ---AHESSSSLKNRDVRTLLPLTLKQLSSASTTGESN----FSIDGVDIKT 69
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+ +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GMY+ + G LK
Sbjct: 70 VVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKI 129
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS--MGVSFSNGF 637
Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS + +++ + +S
Sbjct: 130 FQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMP 189
Query: 638 XXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
P S + VLN+ N+P ++ SE GVH D + + + +P
Sbjct: 190 TPAKPYQTGPSNQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELR-IPLL 248
Query: 818 QITDAIDYNMDSGRLYSTIDEFHYKAT 898
Q+ +A++ + G +YST+DE +K+T
Sbjct: 249 QVKEALEQLSNDGCIYSTLDETCFKST 275
>gb|AAF26967.1| putative replication factor A [Arabidopsis thaliana]
Length = 282
Score = 145 bits (366), Expect = 3e-33
Identities = 85/279 (30%), Positives = 148/279 (53%), Gaps = 14/279 (5%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F PSQ T+ A +S++ K R + +PLT+KQ+ A +G + F ++GV++
Sbjct: 17 FMPSQATTQ---AHESSSSLKNRDVRTLLPLTLKQLSSASTTGESN----FSIDGVDIKT 69
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+ +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GMY+ + G LK
Sbjct: 70 VVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKI 129
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS + +++
Sbjct: 130 FQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMP----- 184
Query: 644 XXXXXXXXXXXAPVTSGSSDTDL--------------HTQVLNFFNEPANLESEHGVHVD 781
P +G S+ +L VLN+ N+P ++ SE GVH D
Sbjct: 185 ---YSTMPTPAKPYQTGPSNQNLFQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCD 241
Query: 782 EVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ + + +P Q+ +A++ + G +YST+DE +K+T
Sbjct: 242 IIARELR-IPLLQVKEALEQLSNDGCIYSTLDETCFKST 279
>dbj|BAD53865.1| putative replication protein A2 [Oryza sativa (japonica
cultivar-group)]
Length = 438
Score = 129 bits (325), Expect = 2e-28
Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Frame = +2
Query: 80 MMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGA--SSTMPLTVKQV---VDAQQSGTGDK 244
+MP ++ +++++ AA + +PSK R S +P TV + A + G
Sbjct: 13 LMPSQRSGAPAPEYSAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISRSFAAALAADGGG 72
Query: 245 GAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQ 424
F ++GVE N+R++G V + V R TDV FTLDD TG++ +RW+ D SD+ +T+ IQ
Sbjct: 73 DPVFSIDGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWITDQSDTRDTSYIQ 132
Query: 425 NGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELK 580
G+Y+ V +L G Q +K+ A SIRPI +FNEV LHFI+C+ +H+E+++ K
Sbjct: 133 EGVYVKVQVNLMGFQAKKQGLARSIRPINNFNEVVLHFIECMHVHLESVQSK 184
>gb|EAL21502.1| hypothetical protein CNBD1960 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 266
Score = 113 bits (282), Expect = 2e-23
Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 9/252 (3%)
Frame = +2
Query: 164 KMRGASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTF 340
K RG + T+ P+TVKQ++DAQQ A F ++GV++A + L+G V T++++
Sbjct: 34 KARGGNQTIRPVTVKQILDAQQV---HPDADFTIDGVDVAQVLLIGSVRNMSTTATNISY 90
Query: 341 TLDDGTGRLDFIRWVNDASD-SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDF 517
+ DGTG +D W++ A D S +T I+ Y+ ++G++K ++ +A IRPITD
Sbjct: 91 EIGDGTGYIDARVWLDSADDESGKTTGIEQDHYVGLMGTIKVFGGKRHVSATHIRPITDG 150
Query: 518 NEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTSGS 697
NEV H ++ + + ++ L+ G+P + G A T+G+
Sbjct: 151 NEVQHHLLKALYV---SLILRGGTPGNAPKAAG--------------THDDYNAGATTGA 193
Query: 698 SDTD-------LHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSG 856
+D L ++L + ++ GVHV ++K + T A+D+ D+G
Sbjct: 194 TDQSAWSHLEPLQRRILEVLSSEGQ-GNDDGVHVTHIIKFLNGADENDFTVALDWLTDNG 252
Query: 857 RLYSTIDEFHYK 892
+YST+DE HY+
Sbjct: 253 YVYSTLDESHYQ 264
>ref|XP_758726.1| hypothetical protein UM02579.1 [Ustilago maydis 521]
gb|EAK83749.1| hypothetical protein UM02579.1 [Ustilago maydis 521]
Length = 285
Score = 102 bits (254), Expect = 3e-20
Identities = 65/265 (24%), Positives = 128/265 (48%), Gaps = 10/265 (3%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAK 313
N + + + K G ++ P+T++Q+++A+Q A FI++G E+ + V +V
Sbjct: 31 NGSQNDSPSGKKAGNNTLRPVTIRQILNAEQP---HPDAEFILDGAELGQLTFVAVVRNI 87
Query: 314 VERTTDVTFTLDDGTGRLDFIRWVNDASD-SFETAAIQNGMYIAVIGSLKGLQERKRATA 490
T+V ++++DGTG+++ +W++ +SD S + + I+N +Y+ V+G+LK Q R+ ++
Sbjct: 88 SRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISS 147
Query: 491 FSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
+RP+ D+NEV H ++ V H++ S + ++S + G
Sbjct: 148 GHMRPVIDYNEVMFHRLEAVHAHLQATRGPTASALKGATSTALFNQAG--------GLES 199
Query: 671 XXAPVTSGSSDTDLHTQVLNFFNEPANL------ESEH---GVHVDEVLKRFKLLPKKQI 823
SGS D++ N P + ES++ GVHV + + + +
Sbjct: 200 NDMNAYSGSKKQDVNDLYKNLGELPQQIMSIVTRESQNHPDGVHVSLIARLLNGVDVNDV 259
Query: 824 TDAIDYNMDSGRLYSTIDEFHYKAT 898
A++ G LY+ D+ H T
Sbjct: 260 KSAVEDLSSDGYLYTAADDNHVLPT 284
>ref|NP_001026063.1| replication protein A2, 32kDa [Gallus gallus]
emb|CAG31422.1| hypothetical protein [Gallus gallus]
Length = 267
Score = 101 bits (252), Expect = 6e-20
Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 4/268 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F+S A A+ S+ + S +P TV Q++ A+Q F ++ VE++ +
Sbjct: 21 SPGGFSSPTGAQAEKKQRSR---SQSIVPCTVSQLLAAEQVDEA-----FRIHDVEISQV 72
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG+V + T++ + +DD T +D +WV+ E + G Y+ V G L+
Sbjct: 73 TVVGIVRHAEKAPTNILYKVDDMTAAPMDVRQWVDTDEAGSENIVVPPGTYVKVAGHLRS 132
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI---ENIELKAGSPARISSSMGVSFSNG 634
Q +K AF I P+ + NE T H ++ V H+ +N+ L + +P +S+ G+S G
Sbjct: 133 FQNKKSLVAFKIMPLENMNEFTTHILETVNAHMILRKNLTLASRAPQSFTSA-GMSDVGG 191
Query: 635 FXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPK 814
+ PV + T +QVLN N S G+ + E+ + +
Sbjct: 192 Y---------GGGSLPV---NGLTAHQSQVLNLIK---NCHSPEGMSLQELKLQLHNVSI 236
Query: 815 KQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+++ G +YST+D+ HYK+T
Sbjct: 237 PTIKQAVEFLSSEGHIYSTVDDDHYKST 264
>sp|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 2)
dbj|BAA00693.1| 30-kDa subunit of replication protein A [Mus musculus]
Length = 270
Score = 97.1 bits (240), Expect = 1e-18
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ S++R A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKK--SRVR-AQHIVPCTISQLLSATLTDE-----VFRIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E A + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFS- 628
Q +K AF I P+ D NE T H ++ V H+ N + AG P+ + M SF+
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPSMSNPGMSESFNF 194
Query: 629 --NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
N F + T + QVLN E G++ ++ + +
Sbjct: 195 SGNNF----------------MPANRLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQ 235
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P I A+D+ + G +YST+D+ H+K+T
Sbjct: 236 HMPVPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>ref|NP_035414.2| replication protein A2 [Mus musculus]
gb|AAH04578.1| Replication protein A2 [Mus musculus]
Length = 270
Score = 95.5 bits (236), Expect = 4e-18
Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ S++R A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKK--SRVR-AQHIVPCTISQLLSATLTDE-----VFRIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E A + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ V H+ N + AG P+ S+ G+S
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKSNSQASAGRPS--MSNPGMSEPG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F + T + QVLN E G++ ++ + + +P
Sbjct: 193 NFSGNN-----------FMPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQHMP 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>gb|AAH76661.1| Replication protein A2, 32kDa [Xenopus tropicalis]
ref|NP_001006795.1| replication protein A2, 32kDa [Xenopus tropicalis]
Length = 275
Score = 95.1 bits (235), Expect = 5e-18
Identities = 67/271 (24%), Positives = 114/271 (42%), Gaps = 7/271 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + + S+ + +P TV Q++ A Q+ F + E++ +
Sbjct: 25 SPGGFGSPAPTQGEKKSRSR---SQQIVPCTVSQLLSATQNDE-----MFRIGEAELSQV 76
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG+V + T++ + +DD T +D +WV+ S E + G Y+ V G L+
Sbjct: 77 TIVGIVRHAEKAPTNILYKVDDMTAAPMDVRQWVDTDEASCENMVVPPGSYVKVAGHLRS 136
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
Q +K AF I P+ D NE H ++ V H+ +S G G
Sbjct: 137 FQNKKSVVAFKIAPVDDMNEFVSHMLEVVHAHM------------TMNSQGAPSGGGSAV 184
Query: 644 XXXXXXXXXXXAPVTSGSSD------TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
SG +D T +Q+LN + + G+ +E+ R
Sbjct: 185 ALNTPGRLGDSGGAFSGGNDNATNGLTPHQSQILNLIK---SFKGNEGMAFEELKNRLHG 241
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ I A+D+ + G +YST+D+ HYK+T
Sbjct: 242 MNVNTIRQAVDFLSNEGHIYSTVDDEHYKST 272
>dbj|BAE41408.1| unnamed protein product [Mus musculus]
dbj|BAE40529.1| unnamed protein product [Mus musculus]
Length = 270
Score = 95.1 bits (235), Expect = 5e-18
Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ S++R A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKK--SRVR-AQHIVPCTISQLLSATLTDE-----VFRIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E A + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ V H+ N + AG P+ S+ G+S
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPS--MSNPGMSEPG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F + T + QVLN E G++ ++ + + +P
Sbjct: 193 NFSGNN-----------FMPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQHMP 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>dbj|BAD69790.1| Replication protein A middle subunit [Bombyx mori]
Length = 259
Score = 94.7 bits (234), Expect = 7e-18
Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 5/271 (1%)
Frame = +2
Query: 101 DFSPSQFTSSQNAAADSTTPSKM-RGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEM 277
D S F ++ N ++ TP K R A+ T P+ ++Q + + + G + G E+
Sbjct: 5 DPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEGVK-------IWGTEI 57
Query: 278 ANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA---IQNGMYIAVI 448
+ +V + + ++T +T+T+ D TGR+ + W++ + E + +Q YI +
Sbjct: 58 QIVSIVARIRSIRMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIY 117
Query: 449 GSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFS 628
G++K + K AF I P+TD N +T H+ QC+ I+++AGS + + V +
Sbjct: 118 GNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIH---NKIQMEAGS-KKEKNIQDVPIN 173
Query: 629 NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK-L 805
N +T SS L+++ + FN E G+ ++ K
Sbjct: 174 N--------MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDR 225
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ K + + +++ G +YSTIDE H++AT
Sbjct: 226 MTKVEFENILEWMCGEGHIYSTIDEEHFRAT 256
>emb|CAA67116.1| p32-subunit of replication protein A [Rattus norvegicus]
Length = 266
Score = 94.0 bits (232), Expect = 1e-17
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A + F + VE++ +
Sbjct: 19 SPGGFGSPTPSQAEKKSRAR---AQHIVPCTISQLLSATLTDE-----VFKIGDVEISQV 70
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 71 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRS 130
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGV--SF 625
Q +K AF I P+ D NE T H ++ V H+ N + G P+ + MG +F
Sbjct: 131 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNF 190
Query: 626 S-NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
S N F + T + QVLN E G++ ++ + +
Sbjct: 191 SGNNF----------------MPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQ 231
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P I A+D+ + G +YST+D+ H+K+T
Sbjct: 232 HMPVASIKQAVDFLCNEGHIYSTVDDDHFKST 263
>ref|NP_067593.1| replication protein A2 [Rattus norvegicus]
gb|AAH79180.1| Replication protein A2 [Rattus norvegicus]
sp|Q63528|RFA2_RAT Replication protein A 32 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 2)
Length = 270
Score = 94.0 bits (232), Expect = 1e-17
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKKSRAR---AQHIVPCTISQLLSATLTDE-----VFKIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGV--SF 625
Q +K AF I P+ D NE T H ++ V H+ N + G P+ + MG +F
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNF 194
Query: 626 S-NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
S N F + T + QVLN E G++ ++ + +
Sbjct: 195 SGNNF----------------MPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQ 235
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P I A+D+ + G +YST+D+ H+K+T
Sbjct: 236 HMPVASIKQAVDFLCNEGHIYSTVDDDHFKST 267
>gb|AAH95005.1| Rpa2 protein [Danio rerio]
Length = 271
Score = 92.4 bits (228), Expect = 4e-17
Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 1/276 (0%)
Frame = +2
Query: 74 GKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAP 253
GK S ++ S AA+ A +P TV Q++ A Q+
Sbjct: 5 GKYGEASMAGYTQSPGGFGSPAASQGGDKKGRTRAQQIVPCTVSQLLSAVQAED-----V 59
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F V VE+A + +VG++ + + T ++ + +DD T +D +W++ + + I G
Sbjct: 60 FKVGEVEIAQVTIVGVIRSTDKSTINIQYKVDDMTAAPMDVKQWIDTEDMGVDNSVIPPG 119
Query: 431 MYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS 610
Y+ V G+L+ Q + AFS+R + D NEVT H ++ V H++ + K +
Sbjct: 120 SYVKVSGNLRSFQNNRSLVAFSVRVLEDMNEVTSHMLEVVNAHLQ--QSKPQNMGGGGGM 177
Query: 611 MGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVL 790
M VS ++ V S++ + ++ EP G+ + E+
Sbjct: 178 MPVSHTSMNSMGTTGGYSGANMMLVNGLSANQNQVLSLIKSCQEP------QGISMHELK 231
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
++ + I +D+ + G ++STIDE H+++T
Sbjct: 232 QKLNSMSANVIRQTVDFLSNEGHIFSTIDEDHFRST 267
>gb|AAH72101.1| MGC79017 protein [Xenopus laevis]
Length = 276
Score = 91.7 bits (226), Expect = 6e-17
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 7/271 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + + S+ + +P TV Q++ A Q+ F + E++ +
Sbjct: 26 SPGGFGSPAPTQGEKKSRSR---SQQIVPCTVSQLLSATQNDE-----VFRIGEAELSQV 77
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG+V + T++ + +DD T +D +WV+ S E + G Y+ V G L+
Sbjct: 78 TIVGIVRHAEKAPTNILYKVDDMTAAPMDVRQWVDTDEASCENMVVPPGSYVKVAGHLRS 137
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
Q +K AF I P+ D NE H ++ V H+ +S G G
Sbjct: 138 FQNKKSVVAFKIAPVEDMNEFVSHMLEVVHAHM------------AMNSQGAPSGGGSTV 185
Query: 644 XXXXXXXXXXXAPVTSGSSD------TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
SG +D T +Q+L+ + + G+ +E+ R
Sbjct: 186 ALSTPGRVGDSGRAFSGGNDNPTNGLTPHQSQILSLIK---SCKGNEGMAFEELKNRLHG 242
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ I A+++ + G +YSTID+ HYK T
Sbjct: 243 MNVNTIRQAVEFLSNEGHIYSTIDDEHYKCT 273
>gb|AAT08661.1| single-stranded DNA-binding replication protein A [Hyacinthus
orientalis]
Length = 88
Score = 90.9 bits (224), Expect = 1e-16
Identities = 40/71 (56%), Positives = 60/71 (84%)
Frame = +2
Query: 686 TSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLY 865
++G S+TD++ VL+ F EP++L S+HGVHVDEV+KR LP+K+I +AIDY++D+G +Y
Sbjct: 19 SNGGSETDIYKMVLDVFQEPSSLASDHGVHVDEVVKRLG-LPEKKIKEAIDYHVDTGHIY 77
Query: 866 STIDEFHYKAT 898
STID++H+KAT
Sbjct: 78 STIDDYHFKAT 88
>gb|AAW43367.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_570674.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
Length = 251
Score = 90.5 bits (223), Expect = 1e-16
Identities = 51/151 (33%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Frame = +2
Query: 164 KMRGASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTF 340
K RG + T+ P+TVKQ++DAQQ A F ++GV++A + L+G V T++++
Sbjct: 34 KARGGNQTIRPVTVKQILDAQQV---HPDADFTIDGVDVAQVLLIGSVRNMSTTATNISY 90
Query: 341 TLDDGTGRLDFIRWVNDASD-SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDF 517
+ DGTG +D W++ A D S +T I+ Y+ ++G++K ++ +A IRPITD
Sbjct: 91 EIGDGTGYIDARVWLDSADDESGKTTGIEQDHYVGLMGTIKVFGGKRHVSATHIRPITDG 150
Query: 518 NEVTLHFIQCVRMHIENIELKAGSPARISSS 610
NEV H ++ + + ++ L+ G+P + S
Sbjct: 151 NEVQHHLLKALYV---SLILRGGTPGNVRDS 178
>gb|AAH21257.1| Replication protein A2, 32kDa [Homo sapiens]
gb|AAH12157.1| Replication protein A2, 32kDa [Homo sapiens]
gb|AAH01630.1| Replication protein A2, 32kDa [Homo sapiens]
emb|CAI21777.1| replication protein A2, 32kDa [Homo sapiens]
emb|CAG29344.1| RPA2 [Homo sapiens]
gb|AAX84514.1| replication protein A2, 32kDa [Homo sapiens]
ref|NP_002937.1| replication protein A2, 32kDa [Homo sapiens]
sp|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 2) (P34)
gb|AAA36560.1| replication protein A
Length = 270
Score = 89.0 bits (219), Expect = 4e-16
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ + H+ N + AG S+ G+S +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAP--ISNPGMSEAG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F A QVLN E G++ ++ + K +
Sbjct: 193 NFGGNSFMPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMS 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VSSIKQAVDFLSNEGHIYSTVDDDHFKST 267
>emb|CAI21778.1| replication protein A2, 32kDa [Homo sapiens]
Length = 278
Score = 89.0 bits (219), Expect = 4e-16
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 31 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 82
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 83 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 142
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ + H+ N + AG S+ G+S +
Sbjct: 143 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAP--ISNPGMSEAG 200
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F A QVLN E G++ ++ + K +
Sbjct: 201 NFGGNSFMPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMS 246
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 247 VSSIKQAVDFLSNEGHIYSTVDDDHFKST 275
>emb|CAI21775.1| replication protein A2, 32kDa [Homo sapiens]
Length = 358
Score = 89.0 bits (219), Expect = 4e-16
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 111 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 162
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 163 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 222
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ + H+ N + AG S+ G+S +
Sbjct: 223 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAP--ISNPGMSEAG 280
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F A QVLN E G++ ++ + K +
Sbjct: 281 NFGGNSFMPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMS 326
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 327 VSSIKQAVDFLSNEGHIYSTVDDDHFKST 355
>ref|XP_714857.1| hypothetical protein CaO19.2267 [Candida albicans SC5314]
ref|XP_714795.1| hypothetical protein CaO19.9807 [Candida albicans SC5314]
gb|EAK95816.1| hypothetical protein CaO19.2267 [Candida albicans SC5314]
gb|EAK95752.1| hypothetical protein CaO19.9807 [Candida albicans SC5314]
Length = 272
Score = 88.6 bits (218), Expect = 5e-16
Identities = 78/278 (28%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Frame = +2
Query: 71 TGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGA 250
TG +SQ F+ SSQ T +++R S P+T+KQ+ DA Q +
Sbjct: 11 TGAFGNISQGGFNTEHAGSSQRQ-----TTTQVR--QSLTPVTIKQINDATQPVPDGE-- 61
Query: 251 PFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVND----ASDSFETAA 418
F VN VE+ I VG+V + T++DGTG +D +WV++ A + FE
Sbjct: 62 -FKVNNVELNMISFVGVVRNVENTNASIAVTIEDGTGSIDVRKWVDETISSAEEDFEKYN 120
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
G Y+ V GSLK RK SI ITD N++ H + + H++ + A A
Sbjct: 121 EMKGKYVYVGGSLKQFNNRKTVQNASISLITDSNQIVYHHLSAIEHHLKAQGITAADAAS 180
Query: 599 ISSSMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDT-DLHTQVLNFFNEPANLESEHGVH 775
+ + TS S DT L QV+ E A+ GV
Sbjct: 181 AGAGQATN-------STASAGSGLFMDNPTSLSKDTGSLTDQVIAVLKE-ASRTMPDGVP 232
Query: 776 VDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHY 889
VD V ++ + ++ + N D G+ Y+ D+ Y
Sbjct: 233 VDYVAEKLSITKEESQFQLLKLN-DEGKAYAGYDDNSY 269
>ref|XP_544465.2| PREDICTED: similar to Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (P34) [Canis
familiaris]
Length = 368
Score = 87.4 bits (215), Expect = 1e-15
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 3/267 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 121 SPGGFGSPTPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----MFKIGNVEISQV 172
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 173 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 232
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARIS--SSMGVSFSNGF 637
Q +K AF I P+ D NE T H ++ V H+ + + PA + S+ G+ + F
Sbjct: 233 FQNKKSLVAFKIMPLEDMNEFTAHILEVVNAHMILSKSNSQPPAGRAPISNPGMGETGNF 292
Query: 638 XXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
A QVLN E G++ ++ + + +
Sbjct: 293 GGISSIPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLQHMSVA 338
Query: 818 QITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 339 SIKQAVDFLSNEGHIYSTVDDDHFKST 365
>emb|CAH90667.1| hypothetical protein [Pongo pygmaeus]
sp|Q5RC43|RFA2_PONPY Replication protein A 32 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 2)
Length = 270
Score = 87.4 bits (215), Expect = 1e-15
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ + H+ N + AG S+ G+S +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAP--ISNPGMSEAG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F A QVLN E G++ ++ + K +
Sbjct: 193 NFGGNSFMPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMS 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VSSVKQAMDFLSNEGHIYSTVDDDHFKST 267
>ref|XP_389900.1| hypothetical protein FG09724.1 [Gibberella zeae PH-1]
gb|EAA77773.1| hypothetical protein FG09724.1 [Gibberella zeae PH-1]
Length = 275
Score = 86.7 bits (213), Expect = 2e-15
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 1/234 (0%)
Frame = +2
Query: 182 STMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTG 361
S P+T+KQ++DA+++ G A F ++G + I +G V + + T++T +DDGTG
Sbjct: 44 SLRPVTIKQILDAEEAYAG---ADFKIDGSPVTQITFIGQVRSVQPQPTNITLKIDDGTG 100
Query: 362 RLDFIRWVN-DASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHF 538
+++ +W++ D +D E A + +I + G LK ++ A IRP++DFNEV H
Sbjct: 101 QIEVKKWIDVDKADDSE-AGFELDSHIRIWGRLKSFNNKRHVGAHVIRPVSDFNEVNYHM 159
Query: 539 IQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHT 718
++ +H+ + G ++ F +G + + S L
Sbjct: 160 LEATYVHLYFTKGPLGGQGGGANGDDGMFVDGGGYNDNAGGNTNSHSKLAGCS---PLAK 216
Query: 719 QVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDE 880
++ F ++ GVHV+ + + + +T A D + G +Y+T+D+
Sbjct: 217 KMFKFMSDQPG--GNEGVHVNIITSSTGMSVRDALT-ASDELLGQGLIYTTVDD 267
>ref|XP_610985.2| PREDICTED: similar to Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (P34) [Bos
taurus]
Length = 270
Score = 86.3 bits (212), Expect = 3e-15
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F SS A+ + S+ R A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSS--TASQAKKKSRAR-AQHIVPCTISQLLSATLVDE-----IFRIGNVEISRV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTG-RLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRNAEKAATNIVYKIDDMTTVPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGV--SF 625
Q +K AF I P+ D NE T H ++ V H+ N + AG MG +F
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMMLSKSNSQPSAGRAPISKPGMGEAGNF 194
Query: 626 S-NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
S N F + T QVLN E G++ ++ + +
Sbjct: 195 SGNNF----------------IPANGLTVAQNQVLNLIKACPRPE---GLNFQDLKNQLQ 235
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P+ + A+D+ + G +YST+D+ H+K+T
Sbjct: 236 HMPRNFRSLAVDFLSNEGHIYSTVDDDHFKST 267
>emb|CAA22775.1| ssb2 [Schizosaccharomyces pombe]
ref|NP_588227.2| replication factor A complex protein 2 [Schizosaccharomyces pombe
972h-]
gb|AAC49438.1| single-stranded DNA binding protein p30 subunit
pir||T41124 single-stranded DNA binding protein 30K chain [validated] - fission
yeast (Schizosaccharomyces pombe)
sp|Q92373|RFA2_SCHPO Replication factor-A protein 2 (Single-stranded DNA-binding protein
P30 subunit)
Length = 279
Score = 85.9 bits (211), Expect = 3e-15
Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 4/258 (1%)
Frame = +2
Query: 134 NAAADSTTPS--KMRGASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMV 304
N S+ PS + +GA + + P+T+KQ+++A Q A F ++GVE+ + VG++
Sbjct: 30 NEYDQSSQPSVDRQQGAGNKLRPVTIKQILNASQVHAD---AEFKIDGVEVGQVTFVGVL 86
Query: 305 NAKVERTTDVTFTLDDGTGRLDFIRWVN-DASDSFETAAIQNGMYIAVIGSLKGLQERKR 481
+TT+ T+ ++DGTG ++ W + DA T Y+ V G++K +
Sbjct: 87 RNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALSELAT-----DTYVRVYGNIKIFSGKIY 141
Query: 482 ATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXX 661
+ IR I D NEV HF++ + +H+ + + G S + G+
Sbjct: 142 IASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAPGYGTSNALGYNNISSNGA 201
Query: 662 XXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDY 841
+ S T + + P E+ GVHV ++ + + P +T D+
Sbjct: 202 ANSLEQKLAEYSLTPAQMTVMQAIHSAP---ETNEGVHVRQLAQ--SVGPGIDLTAVTDF 256
Query: 842 NMDSGRLYSTIDEFHYKA 895
G +Y+TIDE H+K+
Sbjct: 257 LQQEGIIYTTIDENHFKS 274
>emb|CAA21823.1| ssb2 [Schizosaccharomyces pombe]
Length = 247
Score = 85.5 bits (210), Expect = 4e-15
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 4/253 (1%)
Frame = +2
Query: 149 STTPS--KMRGASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVE 319
S+ PS + +GA + + P+T+KQ+++A Q A F ++GVE+ + VG++
Sbjct: 3 SSQPSVDRQQGAGNKLRPVTIKQILNASQVHAD---AEFKIDGVEVGQVTFVGVLRNIHA 59
Query: 320 RTTDVTFTLDDGTGRLDFIRWVN-DASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFS 496
+TT+ T+ ++DGTG ++ W + DA T Y+ V G++K + +
Sbjct: 60 QTTNTTYQIEDGTGMIEVRHWEHIDALSELAT-----DTYVRVYGNIKIFSGKIYIASQY 114
Query: 497 IRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXX 676
IR I D NEV HF++ + +H+ + + G S + G+
Sbjct: 115 IRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAPGYGTSNALGYNNISSNGAANSLE 174
Query: 677 APVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSG 856
+ S T + + P E+ GVHV ++ + + P +T D+ G
Sbjct: 175 QKLAEYSLTPAQMTVMQAIHSAP---ETNEGVHVRQLAQ--SVGPGIDLTAVTDFLQQEG 229
Query: 857 RLYSTIDEFHYKA 895
+Y+TIDE H+K+
Sbjct: 230 IIYTTIDENHFKS 242
>gb|AAW25942.1| SJCHGC02904 protein [Schistosoma japonicum]
Length = 262
Score = 85.1 bits (209), Expect = 6e-15
Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 4/258 (1%)
Frame = +2
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVN-GVEMANIRLVGMVNAK 313
+A S K+ + +P T +++ A Q G DK F+ G+E + I +VG+V +
Sbjct: 23 SAGASAGQKKINYQGTIVPCTCAEILAANQDG--DK---FVSPCGLEFSQITVVGIVRSV 77
Query: 314 VERTTDVTFTLDDGTGR---LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRA 484
E +T V + +DD TG + F D++ S ++ + Y+ V G ++ Q K
Sbjct: 78 NESSTRVEYEIDDYTGPYLPVKFFTEDQDSTSSIQSRPFRELSYVRVHGHVRNFQGVKHV 137
Query: 485 TAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXX 664
AF + ++D NE+T H ++ + + I++K S+G
Sbjct: 138 IAFRVIYVSDMNELTTHILEVIYARMLYIKMKHDE------------SDGINNKGIFTES 185
Query: 665 XXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYN 844
A T + T L Q+L E G+ + ++ ++ + +P++QI + +D+
Sbjct: 186 ASNNAVGTVSNGLTVLQNQILAIVR---TFIGERGIPISQLTEKLRGIPERQIREDLDFL 242
Query: 845 MDSGRLYSTIDEFHYKAT 898
G +YST+D+ H++AT
Sbjct: 243 SAEGHVYSTVDDDHFRAT 260
>ref|XP_658186.1| hypothetical protein AN0582.2 [Aspergillus nidulans FGSC A4]
gb|EAA66681.1| hypothetical protein AN0582.2 [Aspergillus nidulans FGSC A4]
Length = 278
Score = 84.7 bits (208), Expect = 7e-15
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 15/260 (5%)
Frame = +2
Query: 146 DSTTPSKMR---GASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKV 316
++T+PS R ++ P+T+KQ++DA Q A F ++G ++++I +G V
Sbjct: 23 ETTSPSGGRQEWNNTTLRPVTIKQILDATQPYPE---ANFTIDGQDVSSIVFIGQVRNIS 79
Query: 317 ERTTDVTFTLDDGTGRLDFIRWVN-----DASDSF-----ETAAIQNGMYIAVIGSLKGL 466
+ T+VT+ LDDGTG ++ +W+N D ++ F + ++ Y V G LK L
Sbjct: 80 TQATNVTYKLDDGTGEVEAKQWINPSEAMDTTEDFGKEGKDLNGVEINGYAKVFGKLKSL 139
Query: 467 -QERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
+RK +RP+TD NE+ +HF++ +H+ + G+P + + G
Sbjct: 140 FGDRKVVNTHCVRPLTDINELHVHFLEAAAVHLFHTR---GAPGPAAGATGKIDGGDAAM 196
Query: 644 XXXXXXXXXXXAPVTSGSSDTDLHTQVLNFF-NEPANLESEHGVHVDEVLKRFKLLPKKQ 820
+ S T +V N EP N E H + L LP +
Sbjct: 197 GGLDGAGVGGGGGFPANMSAT--ARRVYNLLRTEPQNNEGLHAQFIAAKLG----LPPQD 250
Query: 821 ITDAIDYNMDSGRLYSTIDE 880
+ A D +++G ++ST+D+
Sbjct: 251 VVRAGDELINAGMVFSTVDD 270
>ref|XP_584610.2| PREDICTED: similar to Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (P34) [Bos
taurus]
Length = 362
Score = 84.7 bits (208), Expect = 7e-15
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 115 SPGGFGSPTASQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 166
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 167 TIVGIIRNAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 226
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ V H+ N + AG + MG + +
Sbjct: 227 FQNKKSLVAFKIIPLEDMNEFTTHILEVVNAHMMLSKSNSQPSAGRAPISNPGMGEAGNF 286
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
G + T QVLN E G++ ++ + + +
Sbjct: 287 G-------------GNNFIPANGLTVAQNQVLNLIKACPRPE---GLNFQDLKNQLQHMS 330
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 331 VASIKLAVDFLSNEGHIYSTVDDDHFKST 359
>gb|AAI12730.1| Unknown (protein for MGC:137236) [Bos taurus]
Length = 270
Score = 84.7 bits (208), Expect = 7e-15
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSPTASQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRNAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ V H+ N + AG + MG + +
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTTHILEVVNAHMMLSKSNSQPSAGRAPISNPGMGEAGNF 194
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
G + T QVLN E G++ ++ + + +
Sbjct: 195 G-------------GNNFIPANGLTVAQNQVLNLIKACPRPE---GLNFQDLKNQLQHMS 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VASIKLAVDFLSNEGHIYSTVDDDHFKST 267
>gb|AAL90389.1| RH07841p [Drosophila melanogaster]
Length = 246
Score = 84.3 bits (207), Expect = 1e-14
Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 2/262 (0%)
Frame = +2
Query: 119 FTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVG 298
F ++Q A + + K G +PL VKQ+VDA + + G++ A +V
Sbjct: 8 FNATQTAPTGAASNQKGEGI---VPLVVKQIVDAPEGNIE-------LFGMQYAMACVVA 57
Query: 299 MVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERK 478
+V +T +T+TL+D +GR+D W+ + D+ + + Y+ V G+ + K
Sbjct: 58 IVRNVETSSTKITYTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSK 116
Query: 479 RATAFSIRPITDFNEVTLHFIQCV--RMHIENIELKAGSPARISSSMGVSFSNGFXXXXX 652
F + PI D NEV H ++ + R E+ + K G+ A +S G F
Sbjct: 117 TLMIFKLLPILDPNEVCTHLLEVLNARYRAEDCQSKGGAGAGAGASSGSGSIADF----- 171
Query: 653 XXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDA 832
+ + SG L + F + SE G+ E+ +F + ++T+
Sbjct: 172 ---TASQSSAIVSG-----LEPKQQAVFQAIKSNVSEEGISRKELKAKFSHISDSELTNI 223
Query: 833 IDYNMDSGRLYSTIDEFHYKAT 898
+D+ + G +YS+ID H+ T
Sbjct: 224 LDFMISEGHIYSSIDADHFICT 245
>ref|NP_610077.1| CG9273-PA [Drosophila melanogaster]
gb|AAL39404.1| GM04951p [Drosophila melanogaster]
gb|AAF53948.2| CG9273-PA [Drosophila melanogaster]
Length = 246
Score = 84.0 bits (206), Expect = 1e-14
Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 2/262 (0%)
Frame = +2
Query: 119 FTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVG 298
F ++Q A + + K G +PL VKQ+VDA + + G++ A +V
Sbjct: 8 FNATQTAPTGAASNQKGEGI---VPLVVKQIVDAPEGNIE-------LFGMQYAMACVVA 57
Query: 299 MVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERK 478
+V +T +T+TL+D +GR+D W+ + D+ + + Y+ V G+ + K
Sbjct: 58 IVRNVETSSTKITYTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSK 116
Query: 479 RATAFSIRPITDFNEVTLHFIQCV--RMHIENIELKAGSPARISSSMGVSFSNGFXXXXX 652
F + P+ D NEV H ++ + R E+ + K G+ A +S G F
Sbjct: 117 TLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQSKGGAGAGAGASSGSGSIADF----- 171
Query: 653 XXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDA 832
+ + SG L + F + SE G+ E+ +F + ++T+
Sbjct: 172 ---TASQSSAIVSG-----LEPKQQAVFQAIKSNVSEEGISRKELKAKFSHISDSELTNI 223
Query: 833 IDYNMDSGRLYSTIDEFHYKAT 898
+D+ + G +YS+ID H+ T
Sbjct: 224 LDFMISEGHIYSSIDADHFICT 245
>gb|EAL33908.1| GA21663-PA [Drosophila pseudoobscura]
Length = 232
Score = 82.8 bits (203), Expect = 3e-14
Identities = 63/265 (23%), Positives = 117/265 (44%), Gaps = 5/265 (1%)
Frame = +2
Query: 119 FTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVG 298
F ++Q A A + + K G +PL +KQ+VDA + + G++ LV
Sbjct: 3 FNATQTAPAGAASNQKGEGI---VPLFIKQIVDAPEGNIE-------LFGMQFGMACLVA 52
Query: 299 MVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERK 478
+V +T +T+TL+D +GR+D W+ + D+ + + Y+ V G+ + +K
Sbjct: 53 IVRNVETSSTKITYTLEDHSGRIDAHYWLEE-GDALKAPEVMLNNYVKVYGTTRSQAGQK 111
Query: 479 RATAFSIRPITDFNEVTLHFIQCV--RMHIENIELKAGSPARI---SSSMGVSFSNGFXX 643
F + P+ D NEV H ++ + R E+ + K GS A + ++S + NG
Sbjct: 112 SLMVFKLLPVLDPNEVCTHLLEALNARYKAEDYQNKGGSSAMVPDFTASQSTAIVNG--- 168
Query: 644 XXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQI 823
L + F + SE G++ E+ +F + ++
Sbjct: 169 ----------------------LDPKQQAVFQAIKSNMSEEGINRKELKAKFSHISDSEL 206
Query: 824 TDAIDYNMDSGRLYSTIDEFHYKAT 898
T+ +D+ + G +YS+ID H+ T
Sbjct: 207 TNILDFMISEGHIYSSIDADHFICT 231
>gb|EAQ88020.1| hypothetical protein CHGG_04639 [Chaetomium globosum CBS 148.51]
Length = 267
Score = 80.9 bits (198), Expect = 1e-13
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 4/234 (1%)
Frame = +2
Query: 191 PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLD 370
P+T+KQ+VD ++ G + A V+G+ + LVG V + ++ T+ +DDGTG +D
Sbjct: 38 PVTIKQLVDCKEPYPGSELA---VDGLPTTQVTLVGQVRSSTVQSIYTTYRIDDGTGLID 94
Query: 371 FIRWVNDASDSFETA-AIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQC 547
++V+ SD +TA Y+ V G L ++ TA +IR I DFNEV H ++
Sbjct: 95 VKKFVD--SDRPDTAVTFAPDTYVRVFGRLMSYNGKRTVTAHNIRAIDDFNEVNYHLLEA 152
Query: 548 VRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHT--- 718
+H + L GS A + G + ++G G++D L T
Sbjct: 153 TYVH---LALTKGSAAAGQAGAGGTDADGDSMFVDGGYGAGGGG--AGGAADARLATCSP 207
Query: 719 QVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDE 880
FN AN EH +V +V+ + + +T A D + G +Y+T D+
Sbjct: 208 AARTVFNFMANSPGEH-TNVGQVVAGTR-MSAADVTAAADELLAGGIIYTTDDD 259
>dbj|BAE59043.1| unnamed protein product [Aspergillus oryzae]
Length = 276
Score = 80.9 bits (198), Expect = 1e-13
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 16/252 (6%)
Frame = +2
Query: 173 GASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLD 349
G ++T+ P+T+KQ +DA Q A + ++G ++ +I VG V ++T++T+ +D
Sbjct: 33 GNNTTLRPITIKQALDATQPYPE---ADYQIDGADVGSICFVGQVRNISTQSTNITYRID 89
Query: 350 DGTGRLDFIRWVNDA-SDSFET---------AAIQNGMYIAVIGSLKGLQERKRATAFSI 499
DGTG ++ +WV+ A +D+ +T + N Y + G LK ++ + +
Sbjct: 90 DGTGEIEVKQWVDSATADTMDTDDSKAGAGKNQVVNNGYAKIFGKLKTFGNKRFVGSHCV 149
Query: 500 RPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXX 667
RP+TD NE+ H ++ V +H+ + G+ A + G + G
Sbjct: 150 RPLTDINELHCHMLEAVAVHLFFTRGPVGGSGGAGAAAGGAGGADATMGGVDDYSAGRNL 209
Query: 668 XXXAPVTSGSSDTDLHTQVLNFF-NEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYN 844
+PV +V N EP +S G+H + + LP + A D
Sbjct: 210 PAMSPVA---------RRVYNLLKTEP---QSNEGLHAQLIAAKLS-LPMPDVARAGDEL 256
Query: 845 MDSGRLYSTIDE 880
+ +G ++ST+DE
Sbjct: 257 LTAGVIFSTVDE 268
>gb|AAG12435.1| replication protein A [Danio rerio]
ref|NP_571786.1| replication protein A2 [Danio rerio]
Length = 272
Score = 79.7 bits (195), Expect = 2e-13
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 1/265 (0%)
Frame = +2
Query: 74 GKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAP 253
GK S ++ S AA+ A +P TV Q++ A Q+
Sbjct: 5 GKYGEASMAGYTQSPGGFGSPAASQGGDKKGRTRAQQIVPCTVSQLLSAVQAED-----V 59
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F V VE+A + +VG++ + + T ++ + +DD T +D +W++ + + I G
Sbjct: 60 FKVGEVEIAQVTIVGVIRSTDKSTINIQYKVDDMTAAPMDVKQWIDTEDMGVDNSVIPPG 119
Query: 431 MYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS 610
Y+ V G+L+ Q + AFS+R + D NEVT H ++ V H++ + K +
Sbjct: 120 SYVKVSGNLRSFQNNRSLVAFSVRVLEDMNEVTSHMLEVVNAHLQ--QSKPQNMGGDERM 177
Query: 611 MGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVL 790
M VS N + +G S T QVL+ L+ G+ + E+
Sbjct: 178 MPVS-HNSMNSMGTTGGYSGANMMLVNGLSAT--QNQVLSLIKSCQELQ---GISMHELK 231
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLY 865
++ + I +D+ + G Y
Sbjct: 232 QKLNSMSANVIRQTVDFLSNEGHQY 256
>ref|XP_873600.1| PREDICTED: similar to Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (P34) [Bos
taurus]
Length = 270
Score = 79.3 bits (194), Expect = 3e-13
Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSPTASQAKKKSRAQ---AQHIVPCTISQLLSATLVDE-----IFRIGNVEISRV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTG-RLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRNAEKAATNIVYKIDDMTTVPMDVRQWVDTDDASSENTVVPPEAYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ NE T H ++ V H+ N + AG MG + +
Sbjct: 135 FQNKKSLVAFKIMPLEHMNEFTTHILEVVNAHMMLSKSNSQPSAGRAPISKPGMGEAGNF 194
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
G + T QVLN E G++ ++ + + +
Sbjct: 195 GGNNFI-------------PANGLTVAQNQVLNLIKACPRPE---GLNFQDLKNQLQHMS 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VASIKLAVDFLSNEGHIYSTVDDDHFKST 267
>emb|CAG89788.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_461381.1| hypothetical protein DEHA0F25322g [Debaryomyces hansenii CBS767]
Length = 260
Score = 79.0 bits (193), Expect = 4e-13
Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 2/268 (0%)
Frame = +2
Query: 98 TDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEM 277
TD F + N + K + SS P+T+KQ+ +A Q + F V+ V +
Sbjct: 18 TDIGNGGFQNENNGS------QKQQLRSSLTPVTIKQITEATQPIPDGE---FQVHNVNL 68
Query: 278 ANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVND--ASDSFETAAIQNGMYIAVIG 451
+ VG+V + T+ + T++DGTG ++ +W++D A D E + YI V G
Sbjct: 69 NLVSFVGVVRNVQDITSAILITIEDGTGSIEVRKWIDDSNAMDENEQEKYEMNKYIYVTG 128
Query: 452 SLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSN 631
+LK +K ++RPITD NE+ H + + H++ G AR + S N
Sbjct: 129 ALKEFNGKKNLQHATMRPITDHNEILYHHLSAISHHLK----AQGLSARANGEQNQSQDN 184
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
G T + ++L + + + GV V + ++ +
Sbjct: 185 GLFVKDPHGM-----------DVGTSIQDKILTVIRDNTS-SMQEGVPVPFISQKLNVTD 232
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+ + +D+G++YS D+ Y A
Sbjct: 233 DLVLEQCSEL-IDNGKIYSGYDDSAYLA 259
>emb|CAD37148.1| possible replication factor-a protein [Aspergillus fumigatus]
Length = 274
Score = 77.8 bits (190), Expect = 9e-13
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 3/262 (1%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F P + S D+ ++ P+TVKQ +DA Q A F ++G + A+
Sbjct: 24 FMPGEMNSPAGGKGDNNN-------ATLRPITVKQALDASQPYPE---AAFQIDGADAAS 73
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVN-DASDSFETAAIQNGM-YIAVIGSL 457
+ +G V ++T+VT+ +DDGTG ++ +W++ +D+ ET + G V G +
Sbjct: 74 VCFIGQVRNISSQSTNVTYKIDDGTGEIEVKQWIDTQTADTMETDDGKAGTGKNQVFGKI 133
Query: 458 KGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGF 637
K ++ A +RP T+ NEV H ++ +H+ G A +S + ++
Sbjct: 134 KSFGNKRYVGAHCVRPTTNLNEVHCHLLEAAAIHLFFTRGPPGGGAAGGASGAGANADAA 193
Query: 638 XXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFF-NEPANLESEHGVHVDEVLKRFKLLPK 814
P S ++ +V N EP +S G+H + + LP
Sbjct: 194 MGGANDYGTGNSNLPAMSPAA-----RRVYNLLKTEP---QSNEGLHAQLIAAKLN-LPM 244
Query: 815 KQITDAIDYNMDSGRLYSTIDE 880
+ A + + +G ++ST+DE
Sbjct: 245 PDVARAGEELLTAGVIFSTVDE 266
>ref|XP_750997.1| hypothetical protein Afu6g11130 [Aspergillus fumigatus Af293]
gb|EAL88959.1| possible replication factor-a protein [Aspergillus fumigatus Af293]
Length = 289
Score = 77.4 bits (189), Expect = 1e-12
Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 11/270 (4%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F P + S D+ ++ P+TVKQ +DA Q A F ++G + A+
Sbjct: 31 FMPGEMNSPAGGKGDNNN-------ATLRPITVKQALDASQPYPE---AAFQIDGADAAS 80
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVN-DASDSFET---------AAIQNGM 433
+ +G V ++T+VT+ +DDGTG ++ +W++ +D+ ET ++
Sbjct: 81 VCFIGQVRNISSQSTNVTYKIDDGTGEIEVKQWIDTQTADTMETDDGKAGTGKNQVELNG 140
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSM 613
+ V G +K ++ A +RP T+ NEV H ++ +H+ G A +S
Sbjct: 141 FAKVFGKIKSFGNKRYVGAHCVRPTTNLNEVHCHLLEAAAIHLFFTRGPPGGGAAGGASG 200
Query: 614 GVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFF-NEPANLESEHGVHVDEVL 790
+ ++ P S ++ +V N EP +S G+H +
Sbjct: 201 AGANADAAMGGANDYGTGNSNLPAMSPAA-----RRVYNLLKTEP---QSNEGLHAQLIA 252
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLYSTIDE 880
+ LP + A + + +G ++ST+DE
Sbjct: 253 AKLN-LPMPDVARAGEELLTAGVIFSTVDE 281
>ref|XP_961967.1| hypothetical protein [Neurospora crassa N150]
ref|XP_328423.1| hypothetical protein [Neurospora crassa]
gb|EAA32731.1| hypothetical protein [Neurospora crassa]
Length = 284
Score = 76.6 bits (187), Expect = 2e-12
Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +2
Query: 182 STMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTG 361
S P+T+KQ++D +++ G A ++G + + +VG V + + T++T+ +DDGTG
Sbjct: 35 SLRPVTIKQLLDWEETFPG---AELAIDGHPVTQVTIVGQVRSVKPQPTNITYRIDDGTG 91
Query: 362 RLDFIRWVNDASDSFE-----TAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEV 526
+D +WV+ + E I ++ V G LK L +K +A IR I DFNEV
Sbjct: 92 AIDVKKWVDSEAQGGEDGGSGAGTIAPDAFVRVWGRLKSLGGKKHVSANFIRQIEDFNEV 151
Query: 527 TLHFIQCVRMHI 562
H ++ +H+
Sbjct: 152 NYHLLEATYVHL 163
>gb|AAS51744.1| ADL176Wp [Ashbya gossypii ATCC 10895]
ref|NP_983920.1| ADL176Wp [Eremothecium gossypii]
Length = 275
Score = 76.6 bits (187), Expect = 2e-12
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTM--PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVN 307
++ A + P G S+ P+T+KQ+++A+Q + P++V+ +E+ NI VG+V
Sbjct: 20 DSQASAGRPGSTGGQSTATLTPVTIKQILEAKQQV---QDGPYVVHSMELHNICFVGVVR 76
Query: 308 AKVERTTDVTFTLDDGTGRLDFIRWVNDASD-----SFETA--------AIQNGMYIAVI 448
V+ T +V T++DGTG+++F +W ND D ETA Q G Y+ V
Sbjct: 77 NVVDNTANVNVTVEDGTGQIEFRQWSNDQKDMERASQGETAEYNSELSQQFQIGNYVKVF 136
Query: 449 GSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMH 559
+L+ + ++P+ +FNEV H + ++ +
Sbjct: 137 ATLREFGGKMNIQYALVKPVENFNEVLAHHLAAIKCY 173
>ref|XP_454281.1| unnamed protein product [Kluyveromyces lactis]
emb|CAG99368.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 273
Score = 75.9 bits (185), Expect = 3e-12
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Frame = +2
Query: 98 TDFSPSQFTSSQNAAA-DSTTPSKM-------RGASSTMPLTVKQVVDAQQSGTGDKGAP 253
T + P S+ NA D++ PS+ + A++ P+T+KQ+ A+Q + P
Sbjct: 2 TTYHPYNEYSNINAGGFDNSDPSQSSRPNSGGQNANTLTPVTIKQMQSAKQQ---IQDGP 58
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD-SFETAAIQN- 427
+++ G E+ ++ VG++ + T++VT T++DGTG+++F +W ND++D S + QN
Sbjct: 59 YVIMGQELHHVSFVGVIRNVADNTSNVTLTVEDGTGQIEFRKWTNDSNDMSHASQEDQNG 118
Query: 428 ------------GMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVR 553
G YI V SL+ + ++ I FNE+ H ++ ++
Sbjct: 119 DYNSQVAQDYSVGKYIKVYASLREFSGKMNVQYAVVKHIDSFNEILAHHLEVIK 172
>emb|CAG62496.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_449520.1| hypothetical protein CAGL0M03993g [Candida glabrata CBS138]
Length = 279
Score = 74.3 bits (181), Expect = 1e-11
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 19/177 (10%)
Frame = +2
Query: 122 TSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGM 301
+ S+ DS T S ++ P+T+KQ++D+QQ+ + PFI + E+ ++ VG+
Sbjct: 21 SDSRPNTMDSGTGSN---TNTLTPVTIKQILDSQQA---IQDGPFITHNQELHHVCFVGV 74
Query: 302 VNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD------------------SFETAAIQN 427
V + T+++ TL+DGTG+++ +W +D+SD S Q
Sbjct: 75 VRNITDHTSNIYLTLEDGTGQIEVRKWSDDSSDVAQGTDGDDGFGEMKGGESQIAQQYQI 134
Query: 428 GMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMH-IENIELKAGSPA 595
G Y+ V G+LK +K I+ + FN+V H ++ ++ H I N +++ S A
Sbjct: 135 GTYVKVFGALKEFGGKKNIQYAVIKNVDSFNDVIAHHLEAIKCHAIANGKMQGSSLA 191
>emb|CAA96241.1| RFA2 [Saccharomyces cerevisiae]
emb|CAA42421.1| replication factor-A protein 2 [Saccharomyces cerevisiae]
ref|NP_014087.1| Subunit of heterotrimeric Replication Factor A (RF-A), which is a
highly conserved single-stranded DNA binding protein
involved in DNA replication, repair, and recombination;
Rfa2p [Saccharomyces cerevisiae]
gb|AAB27888.1| BUF1 [Saccharomyces cerevisiae]
sp|P26754|RFA2_YEAST Replication factor-A protein 2 (RF-A) (DNA binding protein BUF1)
(Replication protein A 36 kDa subunit)
Length = 273
Score = 72.8 bits (177), Expect = 3e-11
Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 14/160 (8%)
Frame = +2
Query: 122 TSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGM 301
+ S+ + +S T +++ ++ P+T+KQ+++++Q + PF+ + E+ ++ VG+
Sbjct: 21 SESRPGSGESETNTRV---NTLTPVTIKQILESKQD---IQDGPFVSHNQELHHVCFVGV 74
Query: 302 VNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD--------------SFETAAIQNGMYI 439
V + T ++ T++DGTG+++ +W DA+D S + G Y+
Sbjct: 75 VRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYV 134
Query: 440 AVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMH 559
V G+LK +K I+PI FNEV H ++ ++ H
Sbjct: 135 KVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174
>emb|CAI21776.1| replication protein A2, 32kDa [Homo sapiens]
Length = 179
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 27 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 78
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 79 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 138
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI 562
Q +K AF I P+ D NE T H ++ + H+
Sbjct: 139 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHM 171
>ref|XP_513251.1| PREDICTED: hypothetical protein XP_513251 [Pan troglodytes]
Length = 381
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 161 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 212
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 213 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 272
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI 562
Q +K AF I P+ D NE T H ++ + H+
Sbjct: 273 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHM 305
>ref|NP_585792.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
cuniculi GB-M1]
emb|CAD25396.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
cuniculi GB-M1]
Length = 274
Score = 69.7 bits (169), Expect = 2e-10
Identities = 36/152 (23%), Positives = 72/152 (47%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
+P+ S+ S+ ++ G + LT+KQ+ T + +V+ E+ N+
Sbjct: 45 NPTPMDRSEGGYIQSSPKRELLGVKTLRALTIKQIGSCDFDETS---STHLVDSAEVTNV 101
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGL 466
+++G V + T F L+DGTG +D W ++ + + ++ + V GSL+
Sbjct: 102 QIIGWVVSSKTSATGSMFVLEDGTGSVDCTFWPGNSYEEEQCKVLEEQNLLKVNGSLRTF 161
Query: 467 QERKRATAFSIRPITDFNEVTLHFIQCVRMHI 562
++ +A + + D N VT HF+ C+ H+
Sbjct: 162 NGKRSVSASHLSAVEDSNFVTYHFLSCIYQHL 193
>gb|EAA43853.2| ENSANGP00000023457 [Anopheles gambiae str. PEST]
ref|XP_317126.2| ENSANGP00000023457 [Anopheles gambiae str. PEST]
Length = 246
Score = 68.6 bits (166), Expect = 5e-10
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 1/253 (0%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAK 313
NA A A +PL ++QV+++ G + G + A I LV ++
Sbjct: 11 NATAGGGGAGNENKAEGVLPLVIEQVLESSDGGIS-------LFGHQYAMITLVAIIRNV 63
Query: 314 VERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAF 493
+T VT+ L+D TGR+D W+ D + T +I Y V+GS++ K F
Sbjct: 64 DYSSTKVTYQLEDHTGRIDAHLWIEDDGVT-STPSIVPQSYARVVGSVRNQGGSKSIMIF 122
Query: 494 SIRPITDFNEVTLHFIQCVRMHIENIE-LKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
I I NEVT H ++ + + E K ++ + + GF
Sbjct: 123 KIDQINSPNEVTTHLLEVLHARYKGEENSKRKVEGGFDTNANATSNGGFMES-------- 174
Query: 671 XXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMD 850
S + L+ + L + + S+ G+ E+ +F + ++ ID+
Sbjct: 175 -----DSVGASLGLNGKQLAVYKAIKSHVSDIGISRKELQAKFSHISPSEMQSIIDHMGQ 229
Query: 851 SGRLYSTIDEFHY 889
G +Y+T+D H+
Sbjct: 230 EGMIYTTVDTDHF 242
>gb|EAA12428.2| ENSANGP00000018307 [Anopheles gambiae str. PEST]
ref|XP_317127.1| ENSANGP00000018307 [Anopheles gambiae str. PEST]
Length = 247
Score = 68.6 bits (166), Expect = 5e-10
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 1/253 (0%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAK 313
NA A A +PL ++QV+++ G + G + A I LV ++
Sbjct: 11 NATAGGGGAGNENKAEGVLPLVIEQVLESSDGGIS-------LFGHQYAMITLVAIIRNV 63
Query: 314 VERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAF 493
+T VT+ L+D TGR+D W+ D + T +I Y V+GS++ K F
Sbjct: 64 DYSSTKVTYQLEDHTGRIDAHLWIEDDGVT-STPSIVPQSYARVVGSVRNQGGSKSIMIF 122
Query: 494 SIRPITDFNEVTLHFIQCVRMHIENIE-LKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
I I NEVT H ++ + + E K ++ + + GF
Sbjct: 123 KIDQINSPNEVTTHLLEVLHARYKGEENSKRKVEGGFDTNANATSNGGFMES-------- 174
Query: 671 XXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMD 850
S + L+ + L + + S+ G+ E+ +F + ++ ID+
Sbjct: 175 -----DSVGASLGLNGKQLAVYKAIKSHVSDIGISRKELQAKFSHISPSEMQSIIDHMGQ 229
Query: 851 SGRLYSTIDEFHY 889
G +Y+T+D H+
Sbjct: 230 EGMIYTTVDTDHF 242
>pdb|1QUQ|C Chain C, Complex Of Replication Protein A Subunits Rpa14 And Rpa32
pdb|1QUQ|A Chain A, Complex Of Replication Protein A Subunits Rpa14 And Rpa32
Length = 129
Score = 67.4 bits (163), Expect = 1e-09
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +2
Query: 176 ASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDG 355
A +P T+ Q++ A F + VE++ + +VG++ + T++ + +DD
Sbjct: 1 AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDM 55
Query: 356 TGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTL 532
T +D +WV+ S E + Y+ V G L+ Q +K AF I P+ D NE T
Sbjct: 56 TAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTT 115
Query: 533 HFIQCVRMHI 562
H ++ + H+
Sbjct: 116 HILEVINAHM 125
>pdb|1L1O|E Chain E, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
pdb|1L1O|B Chain B, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
Length = 128
Score = 66.6 bits (161), Expect = 2e-09
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +2
Query: 188 MPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR- 364
+P T+ Q++ A F + VE++ + +VG++ + T++ + +DD T
Sbjct: 4 VPCTISQLLSATLVDE-----VFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAP 58
Query: 365 LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQ 544
+D +WV+ S E + Y+ V G L+ Q +K AF I P+ D NE T H ++
Sbjct: 59 MDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILE 118
Query: 545 CVRMHI 562
+ H+
Sbjct: 119 VINAHM 124
>ref|XP_504973.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG77780.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 238
Score = 57.4 bits (137), Expect = 1e-06
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +2
Query: 164 KMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFT 343
K + S +P+T+KQ+ DA + ++GV ++ L G + + + T
Sbjct: 17 KPANSGSVIPVTLKQLNDAFNNSP--PAGALQIDGVPSQHVALCGKIILLESKPSFFMLT 74
Query: 344 LDDGTGRLDFIRWVNDASDSFETA--AIQNGMYIAVIGSLKGLQERKRATAFSIRPITDF 517
+DDGTG D +R ++ E + ++ G YI+ + +LK + + + +TDF
Sbjct: 75 VDDGTGSTD-VRLFRKGTEDDENSELTVKEGDYISCVAALKSFNNKWMVNSSGVAAVTDF 133
Query: 518 NEVTLHFIQCVRMHIE 565
N V H +Q ++ H++
Sbjct: 134 NHVIFHQMQSLQTHLK 149
>gb|AAI04014.1| Replication protein A4, 34kDa [Homo sapiens]
gb|AAH69808.1| Replication protein A4, 34kDa [Homo sapiens]
gb|AAI04015.1| Replication protein A4, 34kDa [Homo sapiens]
gb|AAM09569.1| replication protein A complex 34 kDa subunit RPA4 [Homo sapiens]
emb|CAI42256.1| replication protein A4, 34kDa [Homo sapiens]
gb|AAH69824.1| Replication protein A4, 34kDa [Homo sapiens]
ref|NP_037479.1| replication protein A4, 34kDa [Homo sapiens]
gb|AAH69791.1| Replication protein A4, 34kDa [Homo sapiens]
gb|AAB08488.2| replication protein A complex 34 kd subunit homolog Rpa4 [Homo
sapiens]
sp|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 4)
Length = 261
Score = 56.2 bits (134), Expect = 3e-06
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Frame = +2
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F V G+ ++ + +VG++ + + + + +DD T + ++ +W + + G
Sbjct: 64 FKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVTPLSVG 122
Query: 431 MYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS 610
+Y+ V G LK K I + D NE T+H ++ V H+ + + + S
Sbjct: 123 VYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV---ES 179
Query: 611 MGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVL 790
+ VS S A S + +VL +E + E G + E+
Sbjct: 180 VPVSPSE------------VNDAGDNDESHRNFIQDEVLRLIHECPHQE---GKSIHELR 224
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+ L K I +AIDY G +Y T+D H+K+
Sbjct: 225 AQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKS 259
>gb|AAX79127.1| replication Factor A 28 kDa subunit, putative [Trypanosoma brucei]
gb|AAZ11285.1| replication Factor A 28 kDa subunit, putative [Trypanosoma brucei]
ref|XP_825331.1| replication Factor A 28 kDa subunit [Trypanosoma brucei TREU927]
Length = 255
Score = 55.1 bits (131), Expect = 6e-06
Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 14/261 (5%)
Frame = +2
Query: 137 AAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKV 316
AAA+S ++ R P+T+KQ+++AQ+ G G +++G E+ +VG V
Sbjct: 12 AAANSNAATQQRRVHPIRPVTIKQLLEAQRVGEG----VTVIDGREVTQATVVGRV-VGY 66
Query: 317 ERTTDVTFT------------LDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLK 460
E +D F+ + DGTG + +W+ DA + +Q Y+ G++K
Sbjct: 67 ENDSDNRFSGGALTAKHHGYRITDGTGVVVVRQWM-DADQQDDPLPLQ--CYVRAAGTVK 123
Query: 461 GLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFX 640
Q T ++R ++D NE+ HF+ + H + L GS R SS+ + N
Sbjct: 124 MWQNSPIVTG-TVRLVSDCNELNYHFLDVILTH---LRLTQGS-RRPSSAAPAAVPNTAS 178
Query: 641 XXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL--LPK 814
V + TD+ V+N + A E G+ +DE+
Sbjct: 179 AVGVQNMFPGGDGKVFT----TDV---VINTIRQKA--RGEEGLSMDEISAAALQYGFSG 229
Query: 815 KQITDAIDYNMDSGRLYSTID 877
+ + +AI M+ G++Y T D
Sbjct: 230 QDVRNAIRTLMEEGKIYQTHD 250
>ref|XP_807521.1| replication Factor A 28 kDa subunit [Trypanosoma cruzi strain CL
Brener]
gb|EAN85670.1| replication Factor A 28 kDa subunit, putative [Trypanosoma cruzi]
Length = 264
Score = 52.8 bits (125), Expect = 3e-05
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Frame = +2
Query: 83 MPLSQTDFSPSQFTSSQNAAADSTTPSKM--RGASSTMPLTVKQVVDAQQSGTGDKGAPF 256
M L+ FS +++ N A + S R P+T+KQ+++AQ+ G G
Sbjct: 1 MNLNAYGFSGQTASNAGNGAVGAAAGSNQPQRRMHPIRPVTIKQLLEAQRVGEG----VM 56
Query: 257 IVNGVEMANIRLVGMVNAKVERTTD-VT---------FTLDDGTGRLDFIRWVNDASDSF 406
+V+G E+ +VG V + TT+ VT + + DGTG + +W+ DA
Sbjct: 57 VVDGREVTQATVVGRVIGYEDDTTNRVTGALTAKHYGYRITDGTGLVVVRQWM-DADHQE 115
Query: 407 ETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHI 562
E +Q Y+ G++K Q T ++R ++D NE+ H++ + H+
Sbjct: 116 EPLPVQ--CYVRASGTVKVWQNAPIVTG-TVRLVSDCNELNYHYLDVILTHL 164
>ref|XP_529067.1| PREDICTED: similar to diaphanous 2 isoform 156 [Pan troglodytes]
Length = 829
Score = 49.3 bits (116), Expect = 3e-04
Identities = 45/202 (22%), Positives = 80/202 (39%)
Frame = +2
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+ +VG++ + + + + +DD T + +R + + G+Y+ V G LK
Sbjct: 251 VSIVGVIRGAEKASNHICYKIDDMTAKPIEVRQWFGREKVKQVTPLSVGVYVKVFGILKC 310
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
K I + D NE T+H ++ V H+ + + + S+ VS S
Sbjct: 311 PTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV---ESVPVSPSE---- 363
Query: 644 XXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQI 823
A S + +VL +E + E G + E+ + L K I
Sbjct: 364 --------VNDAGDNDESHRNFIQDEVLRLIHECPHQE---GKSIHELRAQLCDLSVKAI 412
Query: 824 TDAIDYNMDSGRLYSTIDEFHY 889
+AIDY G +Y T+D H+
Sbjct: 413 KEAIDYLTVEGHIYPTVDREHF 434
>emb|CAI74950.1| hypothetical protein [Theileria annulata]
ref|XP_952682.1| hypothetical protein TA11650 [Theileria annulata strain Ankara]
Length = 308
Score = 47.0 bits (110), Expect = 0.002
Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 17/254 (6%)
Frame = +2
Query: 188 MPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRL 367
MPL + + + ++G G V G ++ I+L+G V E D +F +DDGTG +
Sbjct: 57 MPLKINMIYSSWKTG----GVSINVYGYQLDIIKLIGYVKEAKETDQDTSFLIDDGTGTI 112
Query: 368 DFIRW----VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRAT--AFSIRPITDFNEVT 529
+ I ++D ++ + + + + G L T +SI+ +T E+
Sbjct: 113 ECIHLSPGDISDWKRNYISELTRTKSAVKIYGGFNPLYSSSSPTIIIYSIKEVTSPEEIK 172
Query: 530 LHFIQCVRMHIENIELKAGSPARISSSMGVSF-----SNGFXXXXXXXXXXXXXAPVTSG 694
LH + N+ G I +S N +
Sbjct: 173 LHNLDIDGKRNPNVMDTIGEMDSILKEFDISIPKQQPDNSLDNILSTTTDYSPTSTAKIP 232
Query: 695 SSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKR------FKLLPKKQITDAIDYNMDSG 856
++ L + + + + +G+H+ E+ +R F+ + ++ I +
Sbjct: 233 VNELALTKFISSMLANESRNNNYNGLHISEITRRCRQQHSFQSVQEQNIRKILKDLERDA 292
Query: 857 RLYSTIDEFHYKAT 898
++ T+D Y +T
Sbjct: 293 TVFQTLDSNTYAST 306
>ref|XP_764591.1| hypothetical protein TP02_0022 [Theileria parva strain Muguga]
gb|EAN32308.1| hypothetical protein TP02_0022 [Theileria parva]
Length = 314
Score = 45.4 bits (106), Expect = 0.005
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Frame = +2
Query: 188 MPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRL 367
MPL + + + ++G G V G + I+LVG V E D +F +DDGTG +
Sbjct: 57 MPLKINMIYSSWKTG----GVSINVFGYHLDIIKLVGYVKDAKETEQDTSFVIDDGTGTI 112
Query: 368 DFIRW----VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRAT--AFSIRPITDFNEVT 529
+ I ++D S+ + + + + G L T +SI+ +T E+
Sbjct: 113 ECIHLSPGDISDWKRSYISELTRTKSPVKIYGGFNPLYSSSSPTIIIYSIKEVTSPEEIK 172
Query: 530 LHFIQCV 550
LH + +
Sbjct: 173 LHNLDVI 179
>ref|XP_508712.1| PREDICTED: similar to contactin 5 isoform short; neural adhesion
molecule [Pan troglodytes]
Length = 875
Score = 42.4 bits (98), Expect = 0.042
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F + E++ I LVG++ + +T++ + LDD T ++ +WV+ S E +
Sbjct: 608 FKIGNAEISQITLVGIIRHAEKTSTNIVYKLDDMTAAPMNVRQWVDTDDTSSENTVVPPE 667
Query: 431 MYIAVIGSLKGLQERKRATAF 493
Y+ V G L+ Q +K +
Sbjct: 668 TYVKVAGHLRSFQNKKSLVGY 688
>gb|AAK71380.1| Hypothetical protein M04F3.1 [Caenorhabditis elegans]
ref|NP_491446.1| M04F3.1 [Caenorhabditis elegans]
Length = 288
Score = 42.0 bits (97), Expect = 0.054
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 16/272 (5%)
Frame = +2
Query: 113 SQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRL 292
S F + + + +TT G +P+T+ +++ S DK ++V A +
Sbjct: 20 SSFMTDRKPDSKATT----LGERLPVPVTISNLIE-HFSAQDDK---YVVGTFRFATVLT 71
Query: 293 VGMVNAKVERTTDVTFTL-DDGTGRLDF--IRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
VG+V + T T+ L D +++ +++ N+ S +F+ ++I G + IG LKG
Sbjct: 72 VGIVKDISQDGTTYTYDLCDPNNTEMEYRTLKYDNEGS-TFDHSSIVEGTRVRAIGKLKG 130
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI---ENIELKA---------GSPARISS 607
F+I P+ D + T+ ++ + +N+ K G A S
Sbjct: 131 FDGNNTIMLFNITPVEDDKDFTIFELEAEAARLFFQKNVSEKLKSVDSDGFQGMLAPPKS 190
Query: 608 SMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTD-LHTQVLNFFNEPANLESEHGVHVDE 784
M + V +G++ D L ++ + G HV
Sbjct: 191 RMSQTSHQSSQGSDTKERLYAQPQKVMTGANQGDVLRERITAVLMAVPEGSRDEGRHVSW 250
Query: 785 VLKRFKLLPKKQITDAIDYNMDSGRLYSTIDE 880
+ ++ + + + +++G +Y+T+DE
Sbjct: 251 IAEQIQETNISIVRKCVGEMVENGLVYTTVDE 282
>emb|CAJ03255.1| replication Factor A 28 kDa subunit, putative [Leishmania major]
Length = 257
Score = 42.0 bits (97), Expect = 0.054
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 10/157 (6%)
Frame = +2
Query: 191 PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI----RLVGMVNAKVE------RTTDVTF 340
PLT+KQ+++AQ G G +V+G E+ R+VG NA + +
Sbjct: 34 PLTIKQMLEAQSVG----GGVLVVDGREVTQATVVGRVVGYENANMASGGGAITAKHFGY 89
Query: 341 TLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFN 520
+ D TG L +W+ DA E AI ++ G++ Q+ T ++ + D N
Sbjct: 90 RITDNTGMLVVRQWI-DADRMQEPLAINT--HVRASGTVNVWQQTPIVTG-TVVSMADSN 145
Query: 521 EVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSN 631
E+ H + + H + +P S GVS N
Sbjct: 146 EMNYHMLDAILTHFRLTQGNKRAP-----SSGVSIQN 177
>ref|ZP_00566317.1| Acriflavin resistance protein [Methylobacillus flagellatus KT]
gb|EAN01735.1| Acriflavin resistance protein [Methylobacillus flagellatus KT]
Length = 1046
Score = 42.0 bits (97), Expect = 0.054
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Frame = +2
Query: 194 LTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRL-D 370
++++QVVDA T +GA FI N + I G + L T R+ D
Sbjct: 199 VSLQQVVDAVSRSTAIRGAGFIENNNQRIIINTEGQALDPQQLARTALLHLAGQTLRISD 258
Query: 371 FIRWVNDASDSFETAAI--QNGMYIAVIGSL----KGLQERKRATAFSIRPITDFNEVTL 532
+ V A+ S AAI +G+Y+++ L KG+ + + + P+ D EVTL
Sbjct: 259 IGQVVEGAAPSISAAAINGHDGIYLSIQSQLGANTKGVTQAVESALAELGPVLDAREVTL 318
Query: 533 H 535
H
Sbjct: 319 H 319
>emb|CAA80683.1| 28 kilodalton subunit of replication protein A [Crithidia
fasciculata]
sp|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit (RP-A) (RF-A) (Replication
factor-A protein 2)
Length = 258
Score = 42.0 bits (97), Expect = 0.054
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Frame = +2
Query: 113 SQFTSSQNAAADST--TPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SQ S+ +AAA S + R PLT+KQ+++AQ G G +V+G E+
Sbjct: 4 SQAGSNFSAAASSNGGQQQQQRRQHPIRPLTIKQMLEAQSVG----GGVMVVDGREVTQA 59
Query: 287 ----RLVGMVNAKVE------RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMY 436
R+VG NA + + + D TG + +W+ DA + E + +
Sbjct: 60 TVVGRVVGYENANMASGGGAITAKHFGYRITDNTGMIVVRQWI-DADRAQEPIPLNT--H 116
Query: 437 IAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMG 616
+ G++ Q+ T ++ + D NE+ H + + H+ + + I S
Sbjct: 117 VRASGTVNVWQQSPIVTG-TVVSMADSNEMNYHMLDAILTHLRLTQGNKRAAGNIGSGAS 175
Query: 617 VSFS 628
V S
Sbjct: 176 VQNS 179
>emb|CAI21774.1| replication protein A2, 32kDa [Homo sapiens]
Length = 122
Score = 40.4 bits (93), Expect = 0.16
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Frame = +2
Query: 506 ITDFNEVTLHFIQCVRMHIENIELKAGSPARIS----SSMGVSFSNGFXXXXXXXXXXXX 673
+ D NE T H ++ + H+ + KA S S+ G+S + F
Sbjct: 1 LEDMNEFTTHILEVINAHM--VLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLT 58
Query: 674 XAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDS 853
A QVLN E G++ ++ + K + I A+D+ +
Sbjct: 59 VA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMSVSSIKQAVDFLSNE 104
Query: 854 GRLYSTIDEFHYKAT 898
G +YST+D+ H+K+T
Sbjct: 105 GHIYSTVDDDHFKST 119
>ref|XP_544897.2| PREDICTED: similar to ankyrin repeat domain 3 [Canis familiaris]
Length = 826
Score = 40.0 bits (92), Expect = 0.21
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 27/199 (13%)
Frame = +2
Query: 23 PPICAPASLFAAPPQVTGKMMP--LSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPL 196
PP+C P +AP + + LSQ D SQ + S + S++ ASS L
Sbjct: 354 PPVCTPLKRASAPTFDSDYSLSELLSQLDSGTSQTLDGPEELSRSCSESRLPSASSGKRL 413
Query: 197 TVKQVVDAQQSGTGDKGAPF----IVNGVEMANIRLVGMVNA----------KVERTTDV 334
+ VD+ S G F + +I+ +V+A K+ + DV
Sbjct: 414 SGVSSVDSAFSSRGSLSLSFEREPSTGDLGTTDIQKKKLVDAIVSGDTSRLMKILQPQDV 473
Query: 335 TFTLDDG---------TGRLDFIRW--VNDASDSFETAAIQNGMYIAVIGSLKGLQERKR 481
LD G G+ + ++W +N+A+ + +++AV ++G+ E
Sbjct: 474 DLVLDGGASLLHLAVEAGQEECVKWLLLNNANPNLTNRKGSTPLHVAVEKRVRGVVELLL 533
Query: 482 ATAFSIRPITDFNEVTLHF 538
A S+ + LHF
Sbjct: 534 ARKISVNAADEDQWTALHF 552
>ref|XP_585478.2| PREDICTED: similar to ankyrin repeat domain 3 isoform 1 [Bos
taurus]
Length = 777
Score = 38.5 bits (88), Expect = 0.60
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Frame = +2
Query: 89 LSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPF---- 256
LSQ D SQ + S++ SK+ ASS L+ VD+ S G F
Sbjct: 329 LSQLDSGISQTLEGPEELSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREP 388
Query: 257 IVNGVEMANIRLVGMVNA----------KVERTTDVTFTLDDG---------TGRLDFIR 379
N + +I+ +V+A K+ + DV LD G G+ D ++
Sbjct: 389 STNDLGTTDIQKKKLVDAIVSGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVK 448
Query: 380 W--VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHF 538
W +N+A+ + +++AV ++G+ E A S+ + LHF
Sbjct: 449 WLLLNNANPNLTNRRGSTPLHVAVEKRVRGIVELLLARKISVNAADEDQWTALHF 503
>ref|XP_880279.1| PREDICTED: similar to ankyrin repeat domain 3 isoform 4 [Bos
taurus]
Length = 785
Score = 38.5 bits (88), Expect = 0.60
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Frame = +2
Query: 89 LSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPF---- 256
LSQ D SQ + S++ SK+ ASS L+ VD+ S G F
Sbjct: 337 LSQLDSGISQTLEGPEELSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREP 396
Query: 257 IVNGVEMANIRLVGMVNA----------KVERTTDVTFTLDDG---------TGRLDFIR 379
N + +I+ +V+A K+ + DV LD G G+ D ++
Sbjct: 397 STNDLGTTDIQKKKLVDAIVSGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVK 456
Query: 380 W--VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHF 538
W +N+A+ + +++AV ++G+ E A S+ + LHF
Sbjct: 457 WLLLNNANPNLTNRRGSTPLHVAVEKRVRGIVELLLARKISVNAADEDQWTALHF 511
>ref|XP_880207.1| PREDICTED: similar to ankyrin repeat domain 3 isoform 3 [Bos
taurus]
Length = 782
Score = 38.5 bits (88), Expect = 0.60
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Frame = +2
Query: 89 LSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPF---- 256
LSQ D SQ + S++ SK+ ASS L+ VD+ S G F
Sbjct: 334 LSQLDSGISQTLEGPEELSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREP 393
Query: 257 IVNGVEMANIRLVGMVNA----------KVERTTDVTFTLDDG---------TGRLDFIR 379
N + +I+ +V+A K+ + DV LD G G+ D ++
Sbjct: 394 STNDLGTTDIQKKKLVDAIVSGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVK 453
Query: 380 W--VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHF 538
W +N+A+ + +++AV ++G+ E A S+ + LHF
Sbjct: 454 WLLLNNANPNLTNRRGSTPLHVAVEKRVRGIVELLLARKISVNAADEDQWTALHF 508
>ref|XP_880048.1| PREDICTED: similar to ankyrin repeat domain 3 isoform 2 [Bos
taurus]
Length = 785
Score = 38.5 bits (88), Expect = 0.60
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Frame = +2
Query: 89 LSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPF---- 256
LSQ D SQ + S++ SK+ ASS L+ VD+ S G F
Sbjct: 337 LSQLDSGISQTLEGPEELSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREP 396
Query: 257 IVNGVEMANIRLVGMVNA----------KVERTTDVTFTLDDG---------TGRLDFIR 379
N + +I+ +V+A K+ + DV LD G G+ D ++
Sbjct: 397 STNDLGTTDIQKKKLVDAIVSGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVK 456
Query: 380 W--VNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHF 538
W +N+A+ + +++AV ++G+ E A S+ + LHF
Sbjct: 457 WLLLNNANPNLTNRRGSTPLHVAVEKRVRGIVELLLARKISVNAADEDQWTALHF 511
>ref|XP_421742.1| PREDICTED: similar to oligonucleotide/oligosaccharide-binding fold
containing 1 [Gallus gallus]
Length = 530
Score = 37.7 bits (86), Expect = 1.0
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Frame = +2
Query: 2 GASHRIDPPICAPASL----FAAP--PQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPS 163
GA R+ PP C A+ +AP P G+ ++ P+ S++ + PS
Sbjct: 122 GARRRVCPPPCDEAAAERANSSAPRRPAGFGEEQIPARMHKLPTFRMQSESKKYEDEIPS 181
Query: 164 KMRGA----SSTMPLTVKQVVDAQQSGTGDKGAP--FIVNGVEMANIRLVGMVNAKVERT 325
+ G S+ L VK + + ++S K P F NG + + +VGMV ER
Sbjct: 182 LLWGLDPVFSAFARLYVKDIKEMRES----KQVPGIFFYNGHPVRQVDVVGMVVQTKERE 237
Query: 326 TDVTFTLDDGTGRLDFIRWVN 388
++ +DD TG ++ I W N
Sbjct: 238 AFHSYGVDDSTGVINCICWKN 258
>ref|XP_592025.2| PREDICTED: similar to oligonucleotide/oligosaccharide-binding fold
containing 1 [Bos taurus]
Length = 368
Score = 37.0 bits (84), Expect = 1.8
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = +2
Query: 128 SQNAAADSTTPSKMRGASSTM----PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLV 295
S ++ + TPS + G L ++ ++D ++SG F NG + + ++
Sbjct: 3 SNSSQCEDETPSLLWGLDPVFLAFAKLYIRDILDLKESGQVQ--GVFFYNGHPIKQVDIL 60
Query: 296 GMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQE 472
G V E+ ++ +DD TG ++ I W +++ ++A + +++ LK LQE
Sbjct: 61 GTVIGVREKDAFYSYGVDDSTGVINCICW-KRLNNTKSSSATPSARELSLTSQLKKLQE 118
>emb|CAF91030.1| unnamed protein product [Tetraodon nigroviridis]
Length = 259
Score = 37.0 bits (84), Expect = 1.8
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 767 GVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
G+ + E+ +R + I A+++ + G ++STIDE HYK+T
Sbjct: 214 GISIQELKQRLSGISLSVIKQAVEFLSNEGHIFSTIDEDHYKST 257
>ref|XP_599031.2| PREDICTED: similar to Tripartite motif protein 66 [Bos taurus]
Length = 1426
Score = 36.6 bits (83), Expect = 2.3
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Frame = +2
Query: 17 IDPPICAPASLFAAPPQVTGKMMP--LSQTDFSPSQFTSSQNAAADSTT-------PSKM 169
++P + + +SL AAPPQV +++P LS + S S QN A S T PS +
Sbjct: 435 LEPQMQSTSSLTAAPPQVMPQVVPSLLSGPPPTMSSLASGQNQAVPSLTASHLPAMPSLV 494
Query: 170 RGASSTMPLTVKQVVDAQQSGTGD--KGAPFIVNG 268
RG +MP + A S D + P +++G
Sbjct: 495 RGPPQSMPSLMSDPSPAIASLASDHSQAGPNLMSG 529
>gb|EAQ92258.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 577
Score = 36.6 bits (83), Expect = 2.3
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +2
Query: 14 RIDPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMP 193
++D P+C P A P P F+P+ T++ N A + P K R S P
Sbjct: 338 QVDFPVCTPTETSAPTPVTVSLPAPAPSHSFAPATATAAINFAPQAPGPRKSR--RSAKP 395
Query: 194 LTVKQVVDAQQSGTGDKGAP 253
T + + AQ AP
Sbjct: 396 RTRPRRIQAQAPAAAPSNAP 415
>gb|AAZ80925.1| 32kDa replication protein A2 [Macaca mulatta]
Length = 102
Score = 36.6 bits (83), Expect = 2.3
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 704 TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEF 883
T QVLN E G++ ++ + K + I A+D+ + G +YST+D+
Sbjct: 38 TVAQNQVLNLIKACPRPE---GLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 94
Query: 884 HYKAT 898
H+K+T
Sbjct: 95 HFKST 99
>pdb|1Z1D|A Chain A, Structural Model For The Interaction Between Rpa32 C-
Terminal Domain And Sv40 T Antigen Origin Binding Domain
Length = 103
Score = 36.6 bits (83), Expect = 2.3
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 704 TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEF 883
T QVLN E G++ ++ + K + I A+D+ + G +YST+D+
Sbjct: 39 TVAQNQVLNLIKACPRPE---GLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 95
Query: 884 HYKAT 898
H+K+T
Sbjct: 96 HFKST 100
>pdb|1DPU|A Chain A, Solution Structure Of The C-Terminal Domain Of Human Rpa32
Complexed With Ung2(73-88)
Length = 99
Score = 36.6 bits (83), Expect = 2.3
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 704 TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEF 883
T QVLN E G++ ++ + K + I A+D+ + G +YST+D+
Sbjct: 35 TVAQNQVLNLIKACPRPE---GLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 91
Query: 884 HYKAT 898
H+K+T
Sbjct: 92 HFKST 96
>ref|NP_563781.1| unknown protein [Arabidopsis thaliana]
gb|AAM63429.1| unknown [Arabidopsis thaliana]
gb|AAF82208.1| F10K1.17 [Arabidopsis thaliana]
gb|AAO50555.1| unknown protein [Arabidopsis thaliana]
dbj|BAC43365.1| unknown protein [Arabidopsis thaliana]
Length = 160
Score = 36.2 bits (82), Expect = 3.0
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Frame = +2
Query: 179 SSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGT 358
S+ L + + QS T + + ++ G ++ + +VG + ++ + F +DDGT
Sbjct: 7 STHAKLVARDIQRLTQSPT-ESNSFSLLGGACVSRVEIVGTIVSRDLTPKFLKFGVDDGT 65
Query: 359 GRLDFIRWVNDASDSF------------------ETAAIQNGMYIAV---IGSLKGLQER 475
G + + W+N + S+ + A I+ G V +GS +G+ +
Sbjct: 66 GCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVMQI 125
Query: 476 KRATAFSIRPITDFNEVTLHFIQCVRM 556
A + R D N LH+++C+++
Sbjct: 126 TANVAVAER---DPNAEILHWLECLKL 149
>gb|AAG20014.1| Vng1794c [Halobacterium sp. NRC-1]
ref|NP_280534.1| hypothetical protein VNG1794C [Halobacterium sp. NRC-1]
Length = 694
Score = 35.0 bits (79), Expect = 6.7
Identities = 33/120 (27%), Positives = 50/120 (41%)
Frame = +2
Query: 20 DPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLT 199
DP A AA G ++ +SQ+D+ T+S N AD G +T+
Sbjct: 198 DPFSAAEQDALAAFAADGGLVVLMSQSDYKNYDATASLNDLAD--------GIDTTIRFN 249
Query: 200 VKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIR 379
QV D Q + GA F + ++ A+ + T DVT T D+ T +D +R
Sbjct: 250 DTQVTDDQHNA----GAAFAPTTATFPSDDYASLLAARTDGTDDVTITADE-TYTVDVVR 304
>gb|AAP37459.1| replication protein A2; CpRPA2 [Cryptosporidium parvum]
Length = 362
Score = 35.0 bits (79), Expect = 6.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 338 FTLDDGTGRLDFIRWVNDASDSFETA----AIQNGMYIAVIGSLKGLQERKRATAFSIRP 505
F LDDG+G L I W+ D + + +I G ++ + G L + AF +RP
Sbjct: 100 FYLDDGSG-LILIDWLVDNTGTKYKQDLVNSIHEGCFVKIFGELTLMVSEPSVRAFVVRP 158
Query: 506 ITDFNEVTLHFI 541
+ +E++LH I
Sbjct: 159 LVCTDEISLHDI 170
>ref|XP_665492.1| replication protein A2; CpRPA2 [Cryptosporidium hominis TU502]
gb|EAL35260.1| replication protein A2; CpRPA2 [Cryptosporidium hominis]
Length = 362
Score = 35.0 bits (79), Expect = 6.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 338 FTLDDGTGRLDFIRWVNDASDSFETA----AIQNGMYIAVIGSLKGLQERKRATAFSIRP 505
F LDDG+G L I W+ D + + +I G ++ + G L + AF +RP
Sbjct: 100 FYLDDGSG-LILIDWLVDNTGTKYKQDLVNSIHEGCFVKIFGELTLMVSEPSVRAFVVRP 158
Query: 506 ITDFNEVTLHFI 541
+ +E++LH I
Sbjct: 159 LVCTDEISLHDI 170
>ref|XP_626589.1| RP-A, OB fold single strand binding protein [Cryptosporidium parvum
Iowa II]
gb|EAK88628.1| RP-A, OB fold single strand binding protein [Cryptosporidium
parvum]
Length = 362
Score = 35.0 bits (79), Expect = 6.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 338 FTLDDGTGRLDFIRWVNDASDSFETA----AIQNGMYIAVIGSLKGLQERKRATAFSIRP 505
F LDDG+G L I W+ D + + +I G ++ + G L + AF +RP
Sbjct: 100 FYLDDGSG-LILIDWLVDNTGTKYKQDLVNSIHEGCFVKIFGELTLMVSEPSVRAFVVRP 158
Query: 506 ITDFNEVTLHFI 541
+ +E++LH I
Sbjct: 159 LVCTDEISLHDI 170
>ref|XP_758987.1| hypothetical protein UM02840.1 [Ustilago maydis 521]
gb|EAK83998.1| hypothetical protein UM02840.1 [Ustilago maydis 521]
Length = 507
Score = 35.0 bits (79), Expect = 6.7
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +2
Query: 5 ASHRIDPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASS 184
A+ + PP A AA P+V+G + LS TD PS T +A S +S+
Sbjct: 368 AAEDVSPPTEQAADSAAAAPEVSGSALGLSLTDSQPSSSTPIITTSAPSEDADVQLPSSA 427
Query: 185 TMPLTVKQVV----DAQQSGTGDKGA 250
T QV+ ++Q+ T D+ A
Sbjct: 428 TTVPPPPQVIITSSESQEQLTSDEPA 453
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,418,337,464
Number of Sequences: 3454138
Number of extensions: 47933072
Number of successful extensions: 137208
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 128868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136859
length of database: 1,185,965,366
effective HSP length: 133
effective length of database: 726,565,012
effective search space used: 211430418492
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)