BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QCH2g03.yg.2.1 (537 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence 74 2e-11 gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence 74 2e-11 gi|58082325|gb|AC155464.2| Zea mays strain B73 clone ZMMBBb0518C... 58 1e-06 gi|18659825|gb|BM500541.1|BM500541 PAC000000000632 Pioneer AF-1 ... 56 5e-06 gi|20301644|gb|BQ164587.1|BQ164587 952024E03.x4 952 - BMS tissue... 36 4.4 gi|31361592|gb|CD445949.1|CD445949 EL01T0205G03.b Endosperm_4 Ze... 36 4.4 gi|32931122|gb|CF035934.1|CF035934 QCG24g09.yg QCG Zea mays cDNA... 36 4.4 gi|37398861|gb|CF636750.1|CF636750 zmrww00_0B10-012-c08.s4 zmrww... 36 4.4 gi|50338876|gb|CO534002.1|CO534002 3530_1_224_1_C10.y_1 3530 - F... 36 4.4 gi|60400767|gb|DN233574.1|DN233574 MEST1069_D04.T7-1 UGA-ZmSAM-X... 36 4.4 gi|67022499|gb|CO451248.1|CO451248 MZCCL10162D08.g Maize Endospe... 36 4.4 gi|71305391|gb|DR788824.1|DR788824 ZM_BFb0007A05.r ZM_BFb Zea ma... 36 4.4 gi|71773520|gb|DR971420.1|DR971420 ZM_BFb0094B24.r ZM_BFb Zea ma... 36 4.4 gi|76916639|gb|DV166477.1|DV166477 ZM_BFb0164A01.r ZM_BFb Zea ma... 36 4.4 gi|78081744|gb|DV510156.1|DV510156 ZM_BFb0189K09.r ZM_BFb Zea ma... 36 4.4 gi|78123385|gb|DV541769.1|DV541769 ZM_BFb0236K15.f ZM_BFb Zea ma... 36 4.4 gi|78123386|gb|DV541770.1|DV541770 ZM_BFb0236K15.r ZM_BFb Zea ma... 36 4.4 gi|78124894|gb|DV543278.1|DV543278 ZM_BFb0239B20.f ZM_BFb Zea ma... 36 4.4 gi|86468750|gb|DY235120.1|DY235120 ZM_BFb0245L01.f ZM_BFb Zea ma... 36 4.4 gi|91872568|gb|EB402525.1|EB402525 ZM_BFb0309G05.r ZM_BFb Zea ma... 36 4.4 gi|54651294|gb|BT016513.1| Zea mays clone Contig346 mRNA sequence 36 4.4 gi|21209495|gb|AY106417.1| Zea mays PCO115363 mRNA sequence 36 4.4 gi|21212366|gb|AY109008.1| Zea mays PCO071547 mRNA sequence 36 4.4 gi|54651294|gb|BT016513.1| Zea mays clone Contig346 mRNA sequence 36 4.4 gi|21212366|gb|AY109008.1| Zea mays PCO071547 mRNA sequence 36 4.4 gi|21209495|gb|AY106417.1| Zea mays PCO115363 mRNA sequence 36 4.4 gi|92899646|gb|AC185417.1| Zea mays chromosome UNK clone CH201-5... 36 4.4 gi|91206523|gb|AC184871.1| Zea mays chromosome UNK clone CH201-1... 36 4.4 gi|90093415|gb|AC183823.1| Zea mays chromosome UNK clone CH201-2... 36 4.4 gi|85861386|gb|AC177876.1| Zea mays chromosome UNK clone ZMMBBb-... 36 4.4 gi|85861331|gb|AC177821.1| Zea mays chromosome UNK clone CH201-2... 36 4.4 >gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence Length = 2352 Score = 73.8 bits (37), Expect = 2e-11 Identities = 115/145 (79%) Strand = Plus / Plus Query: 386 gataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgc 445 |||||| || ||||| ||||| || ||| ||||||||| ||||| ||||||| |||||| Sbjct: 175 gataaagcttccaggaaatgcaatgctaggtgaaggaaaaccagagaaccagaaccatgc 234 Query: 446 aataatattcacccganncgantnnntncaaactatagatatgaatcaggagcactatat 505 ||||| ||||| ||| || | ||||| || || ||||||||||| || ||||| Sbjct: 235 cataattttcacacgaggtgaaggtctccaaaccatcgacatgaatcaggaacattatat 294 Query: 506 ggaggagncnttgaaaatgagnaat 530 ||||||| | ||||||||||| ||| Sbjct: 295 ggaggagactttgaaaatgaggaat 319 >gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence Length = 2352 Score = 73.8 bits (37), Expect = 2e-11 Identities = 115/145 (79%) Strand = Plus / Plus Query: 386 gataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgc 445 |||||| || ||||| ||||| || ||| ||||||||| ||||| ||||||| |||||| Sbjct: 175 gataaagcttccaggaaatgcaatgctaggtgaaggaaaaccagagaaccagaaccatgc 234 Query: 446 aataatattcacccganncgantnnntncaaactatagatatgaatcaggagcactatat 505 ||||| ||||| ||| || | ||||| || || ||||||||||| || ||||| Sbjct: 235 cataattttcacacgaggtgaaggtctccaaaccatcgacatgaatcaggaacattatat 294 Query: 506 ggaggagncnttgaaaatgagnaat 530 ||||||| | ||||||||||| ||| Sbjct: 295 ggaggagactttgaaaatgaggaat 319 >gi|58082325|gb|AC155464.2| Zea mays strain B73 clone ZMMBBb0518C23, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces Length = 119773 Score = 58.0 bits (29), Expect = 1e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460 ||||||||||| |||||||| | |||||||||||| |||||||| Sbjct: 78274 gaaggaaagcccgaaaaccaaaaccatgcaataattttcacccg 78317 >gi|18659825|gb|BM500541.1|BM500541 PAC000000000632 Pioneer AF-1 array Zea mays cDNA, mRNA sequence Length = 413 Score = 56.0 bits (28), Expect = 5e-06 Identities = 40/45 (88%) Strand = Plus / Plus Query: 486 atgaatcaggagcactatatggaggagncnttgaaaatgagnaat 530 ||||||||||| || |||||||||||| | ||||||||||| ||| Sbjct: 61 atgaatcaggaacattatatggaggagactttgaaaatgaggaat 105 >gi|20301644|gb|BQ164587.1|BQ164587 952024E03.x4 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 363 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 tggagcttcaggcttttc 33 |||||||||||||||||| Sbjct: 69 tggagcttcaggcttttc 86 >gi|31361592|gb|CD445949.1|CD445949 EL01T0205G03.b Endosperm_4 Zea mays cDNA, mRNA sequence Length = 813 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 224 catctacaagataaaact 207 >gi|32931122|gb|CF035934.1|CF035934 QCG24g09.yg QCG Zea mays cDNA clone QCG24g09, mRNA sequence Length = 567 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 526 catctacaagataaaact 543 >gi|37398861|gb|CF636750.1|CF636750 zmrww00_0B10-012-c08.s4 zmrww00 Zea mays cDNA 3', mRNA sequence Length = 862 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 707 catctacaagataaaact 724 >gi|50338876|gb|CO534002.1|CO534002 3530_1_224_1_C10.y_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence Length = 676 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 406 ctatattgatgaagttga 423 >gi|60400767|gb|DN233574.1|DN233574 MEST1069_D04.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 653 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 623 catctacaagataaaact 640 >gi|67022499|gb|CO451248.1|CO451248 MZCCL10162D08.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 889 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 54 ctatattgatgaagttga 71 >gi|71305391|gb|DR788824.1|DR788824 ZM_BFb0007A05.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 745 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 406 ctatattgatgaagttga 423 >gi|71773520|gb|DR971420.1|DR971420 ZM_BFb0094B24.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 701 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 367 ttgatcaggtcatctaca 384 |||||||||||||||||| Sbjct: 392 ttgatcaggtcatctaca 409 >gi|76916639|gb|DV166477.1|DV166477 ZM_BFb0164A01.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 845 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 236 catctacaagataaaact 219 >gi|78081744|gb|DV510156.1|DV510156 ZM_BFb0189K09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 926 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 218 catctacaagataaaact 201 >gi|78123385|gb|DV541769.1|DV541769 ZM_BFb0236K15.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 751 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 709 catctacaagataaaact 726 >gi|78123386|gb|DV541770.1|DV541770 ZM_BFb0236K15.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 768 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 225 catctacaagataaaact 208 >gi|78124894|gb|DV543278.1|DV543278 ZM_BFb0239B20.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 785 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 681 catctacaagataaaact 698 >gi|86468750|gb|DY235120.1|DY235120 ZM_BFb0245L01.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 630 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 5 tcgaaaagctttggagct 22 |||||||||||||||||| Sbjct: 566 tcgaaaagctttggagct 583 >gi|91872568|gb|EB402525.1|EB402525 ZM_BFb0309G05.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 598 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 406 ctatattgatgaagttga 423 >gi|54651294|gb|BT016513.1| Zea mays clone Contig346 mRNA sequence Length = 1212 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 989 catctacaagataaaact 1006 >gi|21209495|gb|AY106417.1| Zea mays PCO115363 mRNA sequence Length = 1067 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 410 catctacaagataaaact 393 >gi|21212366|gb|AY109008.1| Zea mays PCO071547 mRNA sequence Length = 1110 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 32 ctatattgatgaagttga 49 >gi|54651294|gb|BT016513.1| Zea mays clone Contig346 mRNA sequence Length = 1212 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 989 catctacaagataaaact 1006 >gi|21212366|gb|AY109008.1| Zea mays PCO071547 mRNA sequence Length = 1110 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 251 ctatattgatgaagttga 268 |||||||||||||||||| Sbjct: 32 ctatattgatgaagttga 49 >gi|21209495|gb|AY106417.1| Zea mays PCO115363 mRNA sequence Length = 1067 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 410 catctacaagataaaact 393 >gi|92899646|gb|AC185417.1| Zea mays chromosome UNK clone CH201-530D19; ZMMBBc0530D19, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces Length = 198209 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 320 gttagtgaaggcttctgt 337 |||||||||||||||||| Sbjct: 81201 gttagtgaaggcttctgt 81184 >gi|91206523|gb|AC184871.1| Zea mays chromosome UNK clone CH201-163O12; ZMMBBc0163O12, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces Length = 174612 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 441 catgcaataatattcacc 458 |||||||||||||||||| Sbjct: 26957 catgcaataatattcacc 26974 >gi|90093415|gb|AC183823.1| Zea mays chromosome UNK clone CH201-283O2; ZMMBBc0283O02, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces Length = 170638 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 377 catctacaagataaaact 394 |||||||||||||||||| Sbjct: 48301 catctacaagataaaact 48318 >gi|85861386|gb|AC177876.1| Zea mays chromosome UNK clone ZMMBBb-284A9; ZMMBBb0284A09, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces Length = 153291 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 142 ttacatatgttgtctcatgcca 163 |||||||| ||||||||||||| Sbjct: 129795 ttacatattttgtctcatgcca 129816 >gi|85861331|gb|AC177821.1| Zea mays chromosome UNK clone CH201-242O17; ZMMBBc0242O17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces Length = 188267 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 276 agcaaagatagaatcaagaaga 297 ||||||||||||||||| |||| Sbjct: 93905 agcaaagatagaatcaataaga 93884 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 138,594 Number of Sequences: 836351 Number of extensions: 138594 Number of successful extensions: 8751 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8710 Number of HSP's gapped (non-prelim): 41 length of query: 537 length of database: 669,372,029 effective HSP length: 19 effective length of query: 518 effective length of database: 653,481,360 effective search space: 338503344480 effective search space used: 338503344480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)