BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QBL3a04.xg.2.1 (369 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|56691610|gb|CX129513.1|CX129513 QBL3a04.xg QBL Zea mays cDNA ... 702 0.0 gi|40303870|gb|CK348257.1|CK348257 zmrsub1_0X10-002-f05.s1 zmrsu... 664 0.0 gi|6742513|gb|AW313328.1|AW313328 707024D04.x1 707 - Mixed adult... 56 3e-06 gi|16922616|gb|BM075654.1|BM075654 MEST358-E03.T3 ISUM5-RN Zea m... 56 3e-06 gi|17931679|gb|BM268639.1|BM268639 MEST398-G11.univ ISUM5-RN Zea... 56 3e-06 gi|17931832|gb|BM268792.1|BM268792 MEST400-E12.univ ISUM5-RN Zea... 56 3e-06 gi|18167292|gb|BM337131.1|BM337131 MEST203-F11.T3 ISUM5-RN Zea m... 56 3e-06 gi|18170361|gb|BM340201.1|BM340201 MEST319-F09.T3 ISUM5-RN Zea m... 56 3e-06 gi|18171454|gb|BM341294.1|BM341294 MEST333-A08.T3 ISUM5-RN Zea m... 56 3e-06 gi|18176801|gb|BM351734.1|BM351734 MEST345-E12.T3 ISUM5-RN Zea m... 56 3e-06 gi|32844189|gb|CD983870.1|CD983870 QAM14g03.yg QAM Zea mays cDNA... 56 3e-06 gi|32844691|gb|CD984372.1|CD984372 QAM20b12.yg QAM Zea mays cDNA... 56 3e-06 gi|32844765|gb|CD984446.1|CD984446 QAM21c01.yg QAM Zea mays cDNA... 56 3e-06 gi|32845148|gb|CD984829.1|CD984829 QAM2b02.yg QAM Zea mays cDNA ... 56 3e-06 gi|32845432|gb|CD985113.1|CD985113 QAM5g04.yg QAM Zea mays cDNA ... 56 3e-06 gi|32845646|gb|CD985327.1|CD985327 QAM8f03.yg QAM Zea mays cDNA ... 56 3e-06 gi|12045907|gb|BF728137.1|BF728137 1000056E08.x2 1000 - Unigene ... 52 5e-05 gi|5757268|gb|AI964555.1|AI964555 496013F06.x1 496 - stressed sh... 50 2e-04 gi|8102728|gb|AW927370.1|AW927370 945017D03.X2 945 - Mixed adult... 50 2e-04 gi|32844952|gb|CD984633.1|CD984633 QAM23f06.yg QAM Zea mays cDNA... 50 2e-04 gi|78091821|gb|DV520195.1|DV520195 ZM_BFb0204P13.f ZM_BFb Zea ma... 42 0.048 gi|5757358|gb|AI964645.1|AI964645 603040E09.x1 603 - stressed ro... 36 2.9 >gi|56691610|gb|CX129513.1|CX129513 QBL3a04.xg QBL Zea mays cDNA clone QBL3a04, mRNA sequence Length = 421 Score = 702 bits (354), Expect = 0.0 Identities = 362/366 (98%) Strand = Plus / Plus Query: 4 gaagaccaggagcaatttcagttccgtgttcacgtactgtgattatatatacgggacaaa 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaagaccaggagcaatttcagttccgtgttcacgtactgtgattatatatacgggacaaa 60 Query: 64 caaaggctacatgtaccacaagagaagcctagccgagctgaagnnnaaggaggccgaaca 123 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 61 caaaggctacatgtaccacaagagaagcctagccgagctgaagacgaaggaggccgaaca 120 Query: 124 cagcgggaaagaagactgagataacgtactctcaacattttatgcacgaataagttggat 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cagcgggaaagaagactgagataacgtactctcaacattttatgcacgaataagttggat 180 Query: 184 actgcataaagcgtccatcatatacagtagttgctcgctccgttctgttccgttgcctag 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 actgcataaagcgtccatcatatacagtagttgctcgctccgttctgttccgttgcctag 240 Query: 244 agattgagatgtccagcaaatatataatagtccatatgtgtactacaccacagggtttgt 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agattgagatgtccagcaaatatataatagtccatatgtgtactacaccacagggtttgt 300 Query: 304 cgtcccccatgtgtaccctcagtccacatngatttgattagtggagacaggagtggattt 363 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 301 cgtcccccatgtgtaccctcagtccacatcgatttgattagtggagacaggagtggattt 360 Query: 364 gaacag 369 |||||| Sbjct: 361 gaacag 366 >gi|40303870|gb|CK348257.1|CK348257 zmrsub1_0X10-002-f05.s1 zmrsub1 Zea mays cDNA 3', mRNA sequence Length = 822 Score = 664 bits (335), Expect = 0.0 Identities = 360/369 (97%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 4 gaagaccaggagcaatttcagttccgtgttcacgtactgtgattatatatacgggacaaa 63 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 378 gaagaccaggagcaatttcagttccgtgttcacgtactgtgattatatatatgggacaaa 319 Query: 64 caaaggctacatgtaccacaagagaagcctagccgagctgaagnnnaaggaggccgaaca 123 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 318 caaaggctacatgtaccacaagagaagcctagccgagctgaagacgaaggaggccgaaca 259 Query: 124 cagcgggaaagaagactgagataacgtactctcaacattttatgcacgaataagttggat 183 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 258 cagcgggaaagaagactgagattacgtactctcaacattttatgcacgaataagttggat 199 Query: 184 actgcataaag---cgtccatcatatacagtagttgctcgctccgttctgttccgttgcc 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 actgcataaagcgtcgtccatcatatacagtagttgctcgctccgttctgttccgttgcc 139 Query: 241 tagagattgagatgtccagcaaatatataatagtccatatgtgtactacaccacagggtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tagagattgagatgtccagcaaatatataatagtccatatgtgtactacaccacagggtt 79 Query: 301 tgtcgtcccccatgtgtaccctcagtccacatngatttgattagtggagacaggagtgga 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 78 tgtcgtcccccatgtgtaccctcagtccacatcgatttgattagtggagacaggagtgga 19 Query: 361 tttgaacag 369 ||||||||| Sbjct: 18 tttgaacag 10 >gi|6742513|gb|AW313328.1|AW313328 707024D04.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence Length = 635 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Plus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 487 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 542 >gi|16922616|gb|BM075654.1|BM075654 MEST358-E03.T3 ISUM5-RN Zea mays cDNA clone MEST358-E03 3', mRNA sequence Length = 548 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 361 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 306 >gi|17931679|gb|BM268639.1|BM268639 MEST398-G11.univ ISUM5-RN Zea mays cDNA clone MEST398-G11 3', mRNA sequence Length = 601 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 360 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 305 >gi|17931832|gb|BM268792.1|BM268792 MEST400-E12.univ ISUM5-RN Zea mays cDNA clone MEST400-E12 3', mRNA sequence Length = 610 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 360 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 305 >gi|18167292|gb|BM337131.1|BM337131 MEST203-F11.T3 ISUM5-RN Zea mays cDNA clone MEST203-F11 3', mRNA sequence Length = 748 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 370 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 315 >gi|18170361|gb|BM340201.1|BM340201 MEST319-F09.T3 ISUM5-RN Zea mays cDNA clone MEST319-F09 3', mRNA sequence Length = 611 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 361 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 306 >gi|18171454|gb|BM341294.1|BM341294 MEST333-A08.T3 ISUM5-RN Zea mays cDNA clone MEST333-A08 3', mRNA sequence Length = 450 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 329 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 274 >gi|18176801|gb|BM351734.1|BM351734 MEST345-E12.T3 ISUM5-RN Zea mays cDNA clone MEST345-E12 3', mRNA sequence Length = 612 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 362 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 307 >gi|32844189|gb|CD983870.1|CD983870 QAM14g03.yg QAM Zea mays cDNA clone QAM14g03, mRNA sequence Length = 422 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 179 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 124 >gi|32844691|gb|CD984372.1|CD984372 QAM20b12.yg QAM Zea mays cDNA clone QAM20b12, mRNA sequence Length = 405 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Plus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 244 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 299 >gi|32844765|gb|CD984446.1|CD984446 QAM21c01.yg QAM Zea mays cDNA clone QAM21c01, mRNA sequence Length = 405 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 162 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 107 >gi|32845148|gb|CD984829.1|CD984829 QAM2b02.yg QAM Zea mays cDNA clone QAM2b02, mRNA sequence Length = 405 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Plus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 244 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 299 >gi|32845432|gb|CD985113.1|CD985113 QAM5g04.yg QAM Zea mays cDNA clone QAM5g04, mRNA sequence Length = 405 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 162 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 107 >gi|32845646|gb|CD985327.1|CD985327 QAM8f03.yg QAM Zea mays cDNA clone QAM8f03, mRNA sequence Length = 405 Score = 56.0 bits (28), Expect = 3e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccacaag 85 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||||| Sbjct: 162 tgttcacctactgtgattatttatataggacagacaaaggctacagataccacaag 107 >gi|12045907|gb|BF728137.1|BF728137 1000056E08.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 527 Score = 52.0 bits (26), Expect = 5e-05 Identities = 47/54 (87%) Strand = Plus / Plus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctacatgtaccaca 83 ||||||| |||||||||||| |||| ||||| |||||||||||| ||||||| Sbjct: 474 tgttcacctactgtgattatttatataggacagacaaaggctacagataccaca 527 >gi|5757268|gb|AI964555.1|AI964555 496013F06.x1 496 - stressed shoot cDNA library from Wang/Bohnert lab Zea mays cDNA, mRNA sequence Length = 120 Score = 50.1 bits (25), Expect = 2e-04 Identities = 40/45 (88%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctaca 74 ||||||| |||||||||||| |||| ||||| |||||||||||| Sbjct: 99 tgttcacctactgtgattatttatataggacagacaaaggctaca 55 >gi|8102728|gb|AW927370.1|AW927370 945017D03.X2 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea mays cDNA, mRNA sequence Length = 414 Score = 50.1 bits (25), Expect = 2e-04 Identities = 40/45 (88%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctaca 74 ||||||| |||||||||||| |||| ||||| |||||||||||| Sbjct: 310 tgttcacctactgtgattatttatataggacagacaaaggctaca 266 >gi|32844952|gb|CD984633.1|CD984633 QAM23f06.yg QAM Zea mays cDNA clone QAM23f06, mRNA sequence Length = 422 Score = 50.1 bits (25), Expect = 2e-04 Identities = 40/45 (88%) Strand = Plus / Minus Query: 30 tgttcacgtactgtgattatatatacgggacaaacaaaggctaca 74 ||||||| |||||||||||| |||| ||||| |||||||||||| Sbjct: 179 tgttcacctactgtgattatttatataggacagacaaaggctaca 135 >gi|78091821|gb|DV520195.1|DV520195 ZM_BFb0204P13.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 593 Score = 42.1 bits (21), Expect = 0.048 Identities = 33/37 (89%) Strand = Plus / Minus Query: 38 tactgtgattatatatacgggacaaacaaaggctaca 74 |||||||||||| |||| ||||| |||||||||||| Sbjct: 316 tactgtgattatttatataggacagacaaaggctaca 280 >gi|5757358|gb|AI964645.1|AI964645 603040E09.x1 603 - stressed root cDNA library from Wang/Bohnert lab Zea mays cDNA, mRNA sequence Length = 580 Score = 36.2 bits (18), Expect = 2.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 255 tccagcaaatatataata 272 |||||||||||||||||| Sbjct: 29 tccagcaaatatataata 46 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 90,379 Number of Sequences: 836351 Number of extensions: 90379 Number of successful extensions: 7526 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7503 Number of HSP's gapped (non-prelim): 22 length of query: 369 length of database: 669,372,029 effective HSP length: 19 effective length of query: 350 effective length of database: 653,481,360 effective search space: 228718476000 effective search space used: 228718476000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)