BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAZ4d09.yg.2.1 (542 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|78113310|gb|DV531702.1|DV531702 ZM_BFb0221P07.r ZM_BFb Zea ma... 835 0.0 gi|50328087|gb|CO523213.1|CO523213 3530_1_153_1_E02.y_1 3530 - F... 803 0.0 gi|86465980|gb|DY232353.1|DY232353 ZM_BFb0241H14.r ZM_BFb Zea ma... 755 0.0 gi|76284949|gb|DV024517.1|DV024517 ZM_BFb0144L18.r ZM_BFb Zea ma... 46 0.005 gi|78115651|gb|DV534039.1|DV534039 ZM_BFb0225G23.r ZM_BFb Zea ma... 46 0.005 gi|78117338|gb|DV535725.1|DV535725 ZM_BFb0227O18.r ZM_BFb Zea ma... 46 0.005 gi|91049828|gb|EB160246.1|EB160246 ZM_BFb0296P18.r ZM_BFb Zea ma... 46 0.005 gi|58082448|gb|AC155589.2| Zea mays strain B73 clone ZMMBBc0200O... 42 0.071 gi|6021068|gb|AW065996.1|AW065996 687004D10.y1 687 - Early embry... 36 4.4 gi|50334762|gb|CO529888.1|CO529888 3530_1_197_1_H08.y_1 3530 - F... 36 4.4 gi|71298368|gb|DR785166.1|DR785166 ZM_BFb0001J09.r ZM_BFb Zea ma... 36 4.4 gi|71326790|gb|DR800061.1|DR800061 ZM_BFb0023E15.r ZM_BFb Zea ma... 36 4.4 gi|71330841|gb|DR802222.1|DR802222 ZM_BFb0026G07.r ZM_BFb Zea ma... 36 4.4 gi|71437166|gb|DR818216.1|DR818216 ZM_BFb0052N13.r ZM_BFb Zea ma... 36 4.4 gi|71438990|gb|DR820040.1|DR820040 ZM_BFb0057L03.r ZM_BFb Zea ma... 36 4.4 gi|71449877|gb|DR830927.1|DR830927 ZM_BFb0079F03.r ZM_BFb Zea ma... 36 4.4 gi|71771796|gb|DR969733.1|DR969733 ZM_BFb0091J14.r ZM_BFb Zea ma... 36 4.4 gi|76015189|gb|DT942359.1|DT942359 ZM_BFb0127K08.r ZM_BFb Zea ma... 36 4.4 gi|76281270|gb|DV020838.1|DV020838 ZM_BFb0139F14.r ZM_BFb Zea ma... 36 4.4 gi|76281433|gb|DV021001.1|DV021001 ZM_BFb0139J08.r ZM_BFb Zea ma... 36 4.4 gi|76283691|gb|DV023259.1|DV023259 ZM_BFb0142N06.r ZM_BFb Zea ma... 36 4.4 gi|78113396|gb|DV531788.1|DV531788 ZM_BFb0222B09.r ZM_BFb Zea ma... 36 4.4 gi|78122307|gb|DV540691.1|DV540691 ZM_BFb0235C06.r ZM_BFb Zea ma... 36 4.4 gi|89758670|gb|DY687769.1|DY687769 ZM_BFb0280D21.r ZM_BFb Zea ma... 36 4.4 gi|91048264|gb|EB158682.1|EB158682 ZM_BFb0292C21.r ZM_BFb Zea ma... 36 4.4 gi|91871562|gb|EB401519.1|EB401519 ZM_BFb0307J24.r ZM_BFb Zea ma... 36 4.4 gi|58082486|gb|AC155627.2| Zea mays strain B73 clone ZMMBBc0454E... 36 4.4 >gi|78113310|gb|DV531702.1|DV531702 ZM_BFb0221P07.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 865 Score = 835 bits (421), Expect = 0.0 Identities = 461/481 (95%) Strand = Plus / Plus Query: 22 ctgagaggatcggatcgcatggaacttgccgggacatggaggaaggtgatgccttacatg 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctgagaggatcggatcgcatggaacttgccgggacatggaggaaggtgatgccttacatg 60 Query: 82 gccatggtgtttcttcagttcggcttcgccggaatgttcctcatctccgtcgcgtccctg 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gccatggtgtttcttcagttcggcttcgccggaatgttcctcatctccgtcgcgtccctg 120 Query: 142 cggcagggaatgagccactatgtccttgttgtctaccggaacgtagtggcagccattgtc 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cggcagggaatgagccactatgtccttgttgtctaccggaacgtagtggcagccattgtc 180 Query: 202 atggctccattcgcgctatggtttgagaggaaaacaaggcctaaaatgagcctaccggtg 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atggctccattcgcgctatggtttgagaggaaaacaaggcctaaaatgagcctaccggtg 240 Query: 262 ttcatcaagatccttgctttgggattactcgaacccgtgcttgaccaaaacttcatctac 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ttcatcaagatccttgctttgggattactcgaacccgtgcttgaccaaaacttcatctac 300 Query: 322 atgggagtgaatagcacatcagcaagcttctcctctgcgttaaccaacatattgccagct 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atgggagtgaatagcacatcagcaagcttctcctctgcgttaaccaacatattgccagct 360 Query: 382 ctaacttttgtaaatgccatcatactcaggatggagaggatagtgattnnnnngcgacga 441 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 361 ctaacttttgtaaatgccatcatactcaggatggagaggatagtgattaaggagcgacga 420 Query: 442 agccaggctannnnnnnaggcacagccanaacagtntnnnnnnccttgcttatgatactt 501 |||||||||| ||||||||||| |||||| | ||||||||||||||||| Sbjct: 421 agccaggctaagattgcaggcacagccataacagtctgtggtgccttgcttatgatactt 480 Query: 502 t 502 | Sbjct: 481 t 481 >gi|50328087|gb|CO523213.1|CO523213 3530_1_153_1_E02.y_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence Length = 616 Score = 803 bits (405), Expect = 0.0 Identities = 451/473 (95%) Strand = Plus / Plus Query: 30 atcggatcgcatggaacttgccgggacatggaggaaggtgatgccttacatggccatggt 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atcggatcgcatggaacttgccgggacatggaggaaggtgatgccttacatggccatggt 60 Query: 90 gtttcttcagttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcaggg 149 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtttcttcttttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcaggg 120 Query: 150 aatgagccactatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctcc 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aatgagccactatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctcc 180 Query: 210 attcgcgctatggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaa 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 attcgcgctatggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaa 240 Query: 270 gatccttgctttgggattactcgaacccgtgcttgaccaaaacttcatctacatgggagt 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gatccttgctttgggattactcgaacccgtgcttgaccaaaacttcatctacatgggagt 300 Query: 330 gaatagcacatcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttt 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gaatagcacatcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttt 360 Query: 390 tgtaaatgccatcatactcaggatggagaggatagtgattnnnnngcgacgaagccaggc 449 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 361 tgtaaatgccatcatactcaggatggagaggatagtgattaaggagcgacgaagccaggc 420 Query: 450 tannnnnnnaggcacagccanaacagtntnnnnnnccttgcttatgatacttt 502 || ||||||||||| |||||| | |||||||||||||||||| Sbjct: 421 taagattgcaggcacagccataacagtctgtggtgccttgcttatgatacttt 473 >gi|86465980|gb|DY232353.1|DY232353 ZM_BFb0241H14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 647 Score = 755 bits (381), Expect = 0.0 Identities = 439/465 (94%) Strand = Plus / Plus Query: 38 gcatggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttc 97 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcatggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttc 60 Query: 98 agttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcc 157 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 61 agttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcaggaaatgaccc 120 Query: 158 actatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgc 217 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 121 actatgtccttgttgtctaccgaaacgtagtggcagccattgtcatggctccattcgcgc 180 Query: 218 tatggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttg 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tatggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttg 240 Query: 278 ctttgggattactcgaacccgtgcttgaccaaaacttcatctacatgggagtgaatagca 337 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctttgagattactcaaacccgtgcttgaccaaaacttcatctacatgggagtgaatagca 300 Query: 338 catcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttttgtaaatg 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 catcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttttgtaaatg 360 Query: 398 ccatcatactcaggatggagaggatagtgattnnnnngcgacgaagccaggctannnnnn 457 |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 361 ccatcatactcaggatggagaggatagtgattaaggagcgacgaagccaggctaagattg 420 Query: 458 naggcacagccanaacagtntnnnnnnccttgcttatgatacttt 502 ||||||||||| |||||| | ||||||||| |||||||| Sbjct: 421 caggcacagccataacagtctgtggtgccttgcttaagatacttt 465 >gi|76284949|gb|DV024517.1|DV024517 ZM_BFb0144L18.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 608 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 199 gtcatggctccattcgcgctatggtttgagaggaa 233 |||||||| ||||||||||| ||||| |||||||| Sbjct: 261 gtcatggcgccattcgcgctctggttcgagaggaa 295 >gi|78115651|gb|DV534039.1|DV534039 ZM_BFb0225G23.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 532 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 199 gtcatggctccattcgcgctatggtttgagaggaa 233 |||||||| ||||||||||| ||||| |||||||| Sbjct: 261 gtcatggcgccattcgcgctctggttcgagaggaa 295 >gi|78117338|gb|DV535725.1|DV535725 ZM_BFb0227O18.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 852 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 199 gtcatggctccattcgcgctatggtttgagaggaa 233 |||||||| ||||||||||| ||||| |||||||| Sbjct: 261 gtcatggcgccattcgcgctctggttcgagaggaa 295 >gi|91049828|gb|EB160246.1|EB160246 ZM_BFb0296P18.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 767 Score = 46.1 bits (23), Expect = 0.005 Identities = 32/35 (91%) Strand = Plus / Plus Query: 199 gtcatggctccattcgcgctatggtttgagaggaa 233 |||||||| ||||||||||| ||||| |||||||| Sbjct: 262 gtcatggcgccattcgcgctctggttcgagaggaa 296 >gi|58082448|gb|AC155589.2| Zea mays strain B73 clone ZMMBBc0200O20, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces Length = 170072 Score = 42.1 bits (21), Expect = 0.071 Identities = 30/33 (90%) Strand = Plus / Plus Query: 199 gtcatggctccattcgcgctatggtttgagagg 231 |||||||| ||||||||||| ||||| |||||| Sbjct: 15097 gtcatggcgccattcgcgctctggttcgagagg 15129 >gi|6021068|gb|AW065996.1|AW065996 687004D10.y1 687 - Early embryo from Delaware Zea mays cDNA, mRNA sequence Length = 637 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 464 gccatcatcctcaggatggaga 485 >gi|50334762|gb|CO529888.1|CO529888 3530_1_197_1_H08.y_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence Length = 685 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 473 gccatcatcctcaggatggaga 494 >gi|71298368|gb|DR785166.1|DR785166 ZM_BFb0001J09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 858 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 474 gccatcatcctcaggatggaga 495 >gi|71326790|gb|DR800061.1|DR800061 ZM_BFb0023E15.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 494 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 348 gccatcatcctcaggatggaga 369 >gi|71330841|gb|DR802222.1|DR802222 ZM_BFb0026G07.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 911 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 476 gccatcatcctcaggatggaga 497 >gi|71437166|gb|DR818216.1|DR818216 ZM_BFb0052N13.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 864 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 478 gccatcatcctcaggatggaga 499 >gi|71438990|gb|DR820040.1|DR820040 ZM_BFb0057L03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 787 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 474 gccatcatcctcaggatggaga 495 >gi|71449877|gb|DR830927.1|DR830927 ZM_BFb0079F03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 770 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 455 gccatcatcctcaggatggaga 476 >gi|71771796|gb|DR969733.1|DR969733 ZM_BFb0091J14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 771 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 477 gccatcatcctcaggatggaga 498 >gi|76015189|gb|DT942359.1|DT942359 ZM_BFb0127K08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 883 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 473 gccatcatcctcaggatggaga 494 >gi|76281270|gb|DV020838.1|DV020838 ZM_BFb0139F14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 791 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 474 gccatcatcctcaggatggaga 495 >gi|76281433|gb|DV021001.1|DV021001 ZM_BFb0139J08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 782 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 478 gccatcatcctcaggatggaga 499 >gi|76283691|gb|DV023259.1|DV023259 ZM_BFb0142N06.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 593 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 341 cagcaagcttctcctctg 358 |||||||||||||||||| Sbjct: 165 cagcaagcttctcctctg 148 >gi|78113396|gb|DV531788.1|DV531788 ZM_BFb0222B09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 733 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 473 gccatcatcctcaggatggaga 494 >gi|78122307|gb|DV540691.1|DV540691 ZM_BFb0235C06.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 712 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 477 gccatcatcctcaggatggaga 498 >gi|89758670|gb|DY687769.1|DY687769 ZM_BFb0280D21.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 779 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 478 gccatcatcctcaggatggaga 499 >gi|91048264|gb|EB158682.1|EB158682 ZM_BFb0292C21.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 787 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 397 gccatcatactcaggatggaga 418 |||||||| ||||||||||||| Sbjct: 474 gccatcatcctcaggatggaga 495 >gi|91871562|gb|EB401519.1|EB401519 ZM_BFb0307J24.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 614 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 341 cagcaagcttctcctctg 358 |||||||||||||||||| Sbjct: 174 cagcaagcttctcctctg 157 >gi|58082486|gb|AC155627.2| Zea mays strain B73 clone ZMMBBc0454E24, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces Length = 218576 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 295 cccgtgcttgaccaaaacttca 316 ||||||||||||||||| |||| Sbjct: 86962 cccgtgcttgaccaaaatttca 86983 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 161,089 Number of Sequences: 836351 Number of extensions: 161089 Number of successful extensions: 11421 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11364 Number of HSP's gapped (non-prelim): 52 length of query: 542 length of database: 669,372,029 effective HSP length: 19 effective length of query: 523 effective length of database: 653,481,360 effective search space: 341770751280 effective search space used: 341770751280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)