BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAT2e04.yg.2.1 (424 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|32849805|gb|CD989486.1|CD989486 QAT2e04.yg QAT Zea mays cDNA ... 841 0.0 gi|76288790|gb|DV028358.1|DV028358 ZM_BFb0150E22.r ZM_BFb Zea ma... 801 0.0 gi|20802909|gb|BQ293959.1|BQ293959 1091024C04.y3 1091 - Immature... 690 0.0 gi|89756438|gb|DY686487.1|DY686487 ZM_BFb0275B14.r ZM_BFb Zea ma... 309 2e-82 gi|83278579|gb|DV942587.1|DV942587 1000142-E05.T7-1 UGI-Reseq Ze... 216 2e-54 gi|4621656|gb|AI612489.1|AI612489 486085G07.x1 486 - leaf primor... 135 5e-30 gi|19350692|gb|BM895224.1|BM895224 952070D09.x1 952 - BMS tissue... 54 1e-05 gi|19351775|gb|BM896307.1|BM896307 952070D09.y1 952 - BMS tissue... 54 1e-05 gi|22491267|gb|BU051190.1|BU051190 1111039G11.y2 1111 - Unigene ... 54 1e-05 gi|87153090|gb|DY397879.1|DY397879 III-952-10D-G11.M13-R UGIII-R... 54 1e-05 gi|85861442|gb|AC177932.1| Zea mays chromosome UNK clone CH201-1... 40 0.22 gi|56691653|gb|CX129556.1|CX129556 QCH2c04.yg QCH Zea mays cDNA ... 38 0.86 gi|13382314|gb|BG458989.1|BG458989 947052D05.y1 947 - 2 week sho... 36 3.4 gi|22605401|dbj|BD059795.1| Secreted expressed sequence tags (sE... 36 3.4 gi|91630513|gb|AC185126.1| Zea mays chromosome UNK clone CH201-1... 36 3.4 gi|88687868|gb|AC182835.1| Zea mays chromosome UNK clone CH201-1... 36 3.4 gi|89257767|gb|AC182602.3| Zea mays chromosome UNK clone ZMMBBb-... 36 3.4 >gi|32849805|gb|CD989486.1|CD989486 QAT2e04.yg QAT Zea mays cDNA clone QAT2e04, mRNA sequence Length = 425 Score = 841 bits (424), Expect = 0.0 Identities = 424/424 (100%) Strand = Plus / Plus Query: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 Query: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 120 Query: 121 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 180 Query: 181 cggctatccaatcggggaatgcggttgctcggttctttgttgcgctgagccacagaaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cggctatccaatcggggaatgcggttgctcggttctttgttgcgctgagccacagaaagg 240 Query: 241 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 300 Query: 301 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 360 Query: 361 acaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggctggata 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggctggata 420 Query: 421 tagt 424 |||| Sbjct: 421 tagt 424 >gi|76288790|gb|DV028358.1|DV028358 ZM_BFb0150E22.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 815 Score = 801 bits (404), Expect = 0.0 Identities = 419/424 (98%) Strand = Plus / Plus Query: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 447 Query: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ctgaaaggtggaaggctcgccctgtgccagaggaaccaatccatcttttcatcggcatcc 507 Query: 121 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 567 Query: 181 cggctatccaatcggggaatgcggttgctcggttctttgttgcgctgagccacagaaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 cggctatccaatcggggaatgcggttgctcggttctttgttgcgctgagccacagaaagg 627 Query: 241 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 687 Query: 301 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 747 Query: 361 acaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggctggata 420 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct: 748 acaatgtcactgcagattacatcaatgagtgcgacgatgacatctttgtgcggctggata 807 Query: 421 tagt 424 |||| Sbjct: 808 tagt 811 >gi|20802909|gb|BQ293959.1|BQ293959 1091024C04.y3 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence Length = 444 Score = 690 bits (348), Expect = 0.0 Identities = 357/360 (99%) Strand = Plus / Plus Query: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 acgcaacagtgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 144 Query: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 145 ctgaaaggtggaaggctcgccctgtgccagaggaaccaatccatcttttcatcggcatcc 204 Query: 121 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 tctccgccacaaaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttc 264 Query: 181 cggctatccaatcggggaatgcggttgctcggttctttgttgcgctgagccacagaaagg 240 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 265 cggctatccaatcggggaatgtggttgctcggttctttgttgcgctgagccacagaaagg 324 Query: 241 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 agataaatgcagcactgaagaaggaagcagagtattttggagacatagtcattctgccgt 384 Query: 301 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 tcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgc 444 >gi|89756438|gb|DY686487.1|DY686487 ZM_BFb0275B14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 308 Score = 309 bits (156), Expect = 2e-82 Identities = 156/156 (100%) Strand = Plus / Plus Query: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 212 Query: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcc 272 Query: 121 tctccgccacaaaccatttcgccgagcgcatggcta 156 |||||||||||||||||||||||||||||||||||| Sbjct: 273 tctccgccacaaaccatttcgccgagcgcatggcta 308 >gi|83278579|gb|DV942587.1|DV942587 1000142-E05.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence Length = 686 Score = 216 bits (109), Expect = 2e-54 Identities = 112/113 (99%) Strand = Plus / Minus Query: 1 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 acgcaacagcgcttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgt 297 Query: 61 ctgaaaggtggaaggctcgcactgtgccagaggaaccaatccatcttttcatc 113 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 296 ctgaaaggtggaaggctcgccctgtgccagaggaaccaatccatcttttcatc 244 >gi|4621656|gb|AI612489.1|AI612489 486085G07.x1 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 319 Score = 135 bits (68), Expect = 5e-30 Identities = 71/72 (98%) Strand = Plus / Minus Query: 42 cagcaagtcttggaaatgtctgaaaggtggaaggctcgcactgtgccagaggaaccaatc 101 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 319 cagcaagtcttggaaatgtctgaaaggtggaaggctcgccctgtgccagaggaaccaatc 260 Query: 102 catcttttcatc 113 |||||||||||| Sbjct: 259 catcttttcatc 248 >gi|19350692|gb|BM895224.1|BM895224 952070D09.x1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 461 Score = 54.0 bits (27), Expect = 1e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 130 caaaccatttcgccgagcgcatggctattaggaaaacttggatgcag 176 |||| |||||||| |||||||||||| | |||||||| ||||||||| Sbjct: 388 caaatcatttcgctgagcgcatggctgtgaggaaaacatggatgcag 434 >gi|19351775|gb|BM896307.1|BM896307 952070D09.y1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 328 Score = 54.0 bits (27), Expect = 1e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 130 caaaccatttcgccgagcgcatggctattaggaaaacttggatgcag 176 |||| |||||||| |||||||||||| | |||||||| ||||||||| Sbjct: 250 caaatcatttcgctgagcgcatggctgtgaggaaaacatggatgcag 204 >gi|22491267|gb|BU051190.1|BU051190 1111039G11.y2 1111 - Unigene III from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 535 Score = 54.0 bits (27), Expect = 1e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 130 caaaccatttcgccgagcgcatggctattaggaaaacttggatgcag 176 |||| |||||||| |||||||||||| | |||||||| ||||||||| Sbjct: 308 caaatcatttcgctgagcgcatggctgtgaggaaaacatggatgcag 262 >gi|87153090|gb|DY397879.1|DY397879 III-952-10D-G11.M13-R UGIII-Reseq Zea mays cDNA, mRNA sequence Length = 668 Score = 54.0 bits (27), Expect = 1e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 130 caaaccatttcgccgagcgcatggctattaggaaaacttggatgcag 176 |||| |||||||| |||||||||||| | |||||||| ||||||||| Sbjct: 360 caaatcatttcgctgagcgcatggctgtgaggaaaacatggatgcag 314 >gi|85861442|gb|AC177932.1| Zea mays chromosome UNK clone CH201-117C7; ZMMBBc0117C07, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces Length = 207612 Score = 40.1 bits (20), Expect = 0.22 Identities = 29/32 (90%) Strand = Plus / Minus Query: 255 ctgaagaaggaagcagagtattttggagacat 286 ||||||||||||||||| || ||||| ||||| Sbjct: 118843 ctgaagaaggaagcagattactttggggacat 118812 Score = 38.2 bits (19), Expect = 0.86 Identities = 22/23 (95%) Strand = Plus / Minus Query: 132 aaccatttcgccgagcgcatggc 154 ||||||||||||||||| ||||| Sbjct: 119040 aaccatttcgccgagcgtatggc 119018 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 cacatcctagcttttctc 39 |||||||||||||||||| Sbjct: 77825 cacatcctagcttttctc 77808 >gi|56691653|gb|CX129556.1|CX129556 QCH2c04.yg QCH Zea mays cDNA clone QCH2c04, mRNA sequence Length = 576 Score = 38.2 bits (19), Expect = 0.86 Identities = 40/47 (85%) Strand = Plus / Plus Query: 130 caaaccatttcgccgagcgcatggctattaggaaaacttggatgcag 176 |||| ||||| || |||||||||||| | || ||||| ||||||||| Sbjct: 139 caaatcattttgctgagcgcatggctgtgagaaaaacatggatgcag 185 >gi|13382314|gb|BG458989.1|BG458989 947052D05.y1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence Length = 344 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 cacatcctagcttttctc 39 |||||||||||||||||| Sbjct: 127 cacatcctagcttttctc 144 >gi|22605401|dbj|BD059795.1| Secreted expressed sequence tags (sESTs) Length = 395 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 224 gctgagccacagaaagga 241 |||||||||||||||||| Sbjct: 177 gctgagccacagaaagga 194 >gi|91630513|gb|AC185126.1| Zea mays chromosome UNK clone CH201-179E3; ZMMBBc0179E03, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces Length = 167139 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 cacatcctagcttttctc 39 |||||||||||||||||| Sbjct: 29204 cacatcctagcttttctc 29221 >gi|88687868|gb|AC182835.1| Zea mays chromosome UNK clone CH201-170L23, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces Length = 157509 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 cacatcctagcttttctc 39 |||||||||||||||||| Sbjct: 17014 cacatcctagcttttctc 17031 >gi|89257767|gb|AC182602.3| Zea mays chromosome UNK clone ZMMBBb-159M10; ZMMBBb0159M10, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces Length = 147217 Score = 36.2 bits (18), Expect = 3.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 tctccagcaagtcttgga 55 |||||||||||||||||| Sbjct: 89978 tctccagcaagtcttgga 89995 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 137,373 Number of Sequences: 836351 Number of extensions: 137373 Number of successful extensions: 15214 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15164 Number of HSP's gapped (non-prelim): 50 length of query: 424 length of database: 669,372,029 effective HSP length: 19 effective length of query: 405 effective length of database: 653,481,360 effective search space: 264659950800 effective search space used: 264659950800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)