BLASTN 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR2a06.yg.3.1
         (612 letters)

Database: mais_NCBI.fasta 
           836,351 sequences; 669,372,029 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6020444|gb|AW065372.1|AW065372 614048H05.y1 614 - root cDNA l...  1189   0.0  
gi|11545430|gb|AF296122.1|AF296122 Zea mays sesquiterpene cyclas...    38   1.3  
gi|21215432|gb|AY110842.1| Zea mays CL570_1 mRNA sequence              38   1.3  
gi|21215432|gb|AY110842.1| Zea mays CL570_1 mRNA sequence              38   1.3  
gi|11545430|gb|AF296122.1|AF296122 Zea mays sesquiterpene cyclas...    38   1.3  
gi|67017857|gb|CO446606.1|CO446606 MZCCL10096B10.g Maize Endospe...    36   5.0  
gi|58082234|gb|AC155371.2| Zea mays strain B73 clone ZMMBBb0106J...    36   5.0  

>gi|6020444|gb|AW065372.1|AW065372 614048H05.y1 614 - root cDNA
           library from Walbot Lab Zea mays cDNA, mRNA sequence
          Length = 625

 Score = 1189 bits (600), Expect = 0.0
 Identities = 609/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgcatttcaggacccatggggagacaatactcgatgaagccatcgcgttcgcgagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  gcgcatttcaggacccatggggagacaatactcgatgaagccatcgcgttcgcgagaagc 73

                                                                       
Query: 61  cgtctggagatgatgctgccctacgtgaaagggccattgtgggcgcatgaagtcagatcc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 74  cgtctggagatgatgctgccctacgtgaaagggccattgttggcgcatgaagtcagatcc 133

                                                                       
Query: 121 tcgctggagatcccgctgcctaaaaggggcaggatctacgagtcaaagtattacatccat 180
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 134 tcgctggagatcccgctgcctagaagggtcaggatctacgagtcaaagtattacatccat 193

                                                                       
Query: 181 gcgtatgagacaagtggaacgctgcatgagaaggtactgcaacttgccaagctgaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcgtatgagacaagtggaacgctgcatgagaaggtactgcaacttgccaagctgaactcc 253

                                                                       
Query: 241 aacgttctgcagctccatcatcagcaagagctgaagatcctgacaagatggtgggaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aacgttctgcagctccatcatcagcaagagctgaagatcctgacaagatggtgggaggat 313

                                                                       
Query: 301 atgcagatcggatcaaaacttcctttcgcacgagatagaatcgtggagtgttttctatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgcagatcggatcaaaacttcctttcgcacgagatagaatcgtggagtgttttctatgg 373

                                                                       
Query: 361 atcttaggagtatactatgaaccgtgtcattcaagagcccggataatattgacaatggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcttaggagtatactatgaaccgtgtcattcaagagcccggataatattgacaatggtt 433

                                                                       
Query: 421 atcgccatcgtgacactcttggacgatattttcgattctttcgcgaccccacaagaatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atcgccatcgtgacactcttggacgatattttcgattctttcgcgaccccacaagaatgt 493

                                                                       
Query: 481 gaaatactcactaattgcatcgaaagctgggatcccaaaggggctcaagacctcccaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaaatactcactaattgcatcgaaagctgggatcccaaaggggctcaagacctcccaggt 553

                                                                       
Query: 541 tgcatgaaatttgctctagagaagatattggatagctaccagaccattacaaatatgctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgcatgaaatttgctctagagaagatattggatagctaccagaccattacaaatatgctc 613

                       
Query: 601 caccgagaggac 612
           ||||||||||||
Sbjct: 614 caccgagaggac 625


>gi|11545430|gb|AF296122.1|AF296122 Zea mays sesquiterpene cyclase 1
            (stc1) mRNA, Stc1-McC allele, complete cds
          Length = 2028

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 260  atcagcaagagctgaagatcctgacaagatggtgg 294
            |||| ||||||||||||||| | ||||| ||||||
Sbjct: 1046 atcaacaagagctgaagatcataacaaggtggtgg 1080


>gi|21215432|gb|AY110842.1| Zea mays CL570_1 mRNA sequence
          Length = 2028

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 260  atcagcaagagctgaagatcctgacaagatggtgg 294
            |||| ||||||||||||||| | ||||| ||||||
Sbjct: 1046 atcaacaagagctgaagatcataacaaggtggtgg 1080


>gi|21215432|gb|AY110842.1| Zea mays CL570_1 mRNA sequence
          Length = 2028

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 260  atcagcaagagctgaagatcctgacaagatggtgg 294
            |||| ||||||||||||||| | ||||| ||||||
Sbjct: 1046 atcaacaagagctgaagatcataacaaggtggtgg 1080


>gi|11545430|gb|AF296122.1|AF296122 Zea mays sesquiterpene cyclase 1
            (stc1) mRNA, Stc1-McC allele, complete cds
          Length = 2028

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 260  atcagcaagagctgaagatcctgacaagatggtgg 294
            |||| ||||||||||||||| | ||||| ||||||
Sbjct: 1046 atcaacaagagctgaagatcataacaaggtggtgg 1080


>gi|67017857|gb|CO446606.1|CO446606 MZCCL10096B10.g Maize Endosperm
           cDNA Library Zea mays cDNA, mRNA sequence
          Length = 885

 Score = 36.2 bits (18), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 200 cgctgcatgagaaggtactgca 221
           |||||||||||||||| |||||
Sbjct: 549 cgctgcatgagaaggttctgca 528


>gi|58082234|gb|AC155371.2| Zea mays strain B73 clone ZMMBBb0106J19, ***
             SEQUENCING IN PROGRESS ***, 31 unordered pieces
          Length = 181254

 Score = 36.2 bits (18), Expect = 5.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 57    aagccgtctggagatgat 74
             ||||||||||||||||||
Sbjct: 86586 aagccgtctggagatgat 86603


  Database: mais_NCBI.fasta
    Posted date:  Apr 26, 2006 11:51 AM
  Number of letters in database: 669,372,029
  Number of sequences in database:  836,351
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,068
Number of Sequences: 836351
Number of extensions: 171068
Number of successful extensions: 10920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10906
Number of HSP's gapped (non-prelim): 14
length of query: 612
length of database: 669,372,029
effective HSP length: 19
effective length of query: 593
effective length of database: 653,481,360
effective search space: 387514446480
effective search space used: 387514446480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)