BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAF31c07.yg.2.3 (732 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|58082471|gb|AC155612.2| Zea mays strain B73 clone ZMMBBc0286H... 323 2e-86 gi|60353140|gb|DN220113.1|DN220113 MEST1095_E02.T7-1 UGA-ZmSAM-X... 276 4e-72 gi|76015873|gb|DT943043.1|DT943043 ZM_BFb0128M09.r ZM_BFb Zea ma... 272 6e-71 gi|76015599|gb|DT942769.1|DT942769 ZM_BFb0128G08.r ZM_BFb Zea ma... 256 3e-66 gi|71431125|gb|DR812175.1|DR812175 ZM_BFb0040M01.r ZM_BFb Zea ma... 234 1e-59 gi|60358895|gb|DN225868.1|DN225868 MEST1180_E09.T7-1 UGA-ZmSAM-X... 216 3e-54 gi|71422473|gb|DR805741.1|DR805741 ZM_BFb0031F21.r ZM_BFb Zea ma... 163 4e-38 gi|71442157|gb|DR823207.1|DR823207 ZM_BFb0064E03.r ZM_BFb Zea ma... 131 1e-28 gi|74235534|gb|DT643448.1|DT643448 ZM_BFb0102H03.r ZM_BFb Zea ma... 107 2e-21 gi|57790140|gb|AC149819.2| Zea mays clone ZMMBBb0500A22, *** SEQ... 70 4e-10 gi|71771604|gb|DR969541.1|DR969541 ZM_BFb0091F09.r ZM_BFb Zea ma... 42 0.097 gi|91176481|gb|AC184843.1| Zea mays chromosome UNK clone CH201-1... 38 1.5 gi|91872876|gb|EB402833.1|EB402833 ZM_BFb0309N14.f ZM_BFb Zea ma... 36 6.0 gi|92797497|dbj|DD118804.1| MAIZE YELLOW STRIPE1 AND RELATED GENES 36 6.0 gi|25273651|emb|AX540653.1| Sequence 9 from Patent WO0240688 36 6.0 gi|92110185|gb|AC185322.1| Zea mays chromosome UNK clone CH201-1... 36 6.0 gi|89515019|gb|AC183656.1| Zea mays chromosome UNK clone CH201-3... 36 6.0 gi|89365855|gb|AC183589.1| Zea mays chromosome UNK clone ZMMBBb-... 36 6.0 gi|57790160|gb|AC150631.2| Zea mays clone ZMMBBc0109E01, *** SEQ... 36 6.0 >gi|58082471|gb|AC155612.2| Zea mays strain B73 clone ZMMBBc0286H14, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces Length = 189608 Score = 323 bits (163), Expect = 2e-86 Identities = 224/244 (91%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 341 ttgtatttaggggtgacattgatgtgaatgtcccccgtttg-attgtcacaggatgctag 399 |||||||||| |||| ||||||||||||||||| ||| |||||||||||||||| | Sbjct: 132380 ttgtatttagttgtgagattgatgtgaatgtcccttttttttattgtcacaggatgctgg 132321 Query: 400 aatggattggatcattcacctcgatactgatgagttgattcatccagctggtgcccgaga 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132320 aatggattggatcattcacctcgatactgatgagttgattcatccagctggtgcccgaga 132261 Query: 460 gtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggttatcttccc 519 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 132260 gtactccctgaggcgattgcttttagatgttcctgacaatgttgacatggttatcttccc 132201 Query: 520 caattatgtgagtcacagaggcaacatgtttgnngnatatcgtaacgtgtttcacgtctg 579 ||||||||||||| |||| | |||||||||| | |||| |||| ||||||||| |||| Sbjct: 132200 caattatgtgagttgcagaagtaacatgtttgttgaatatggtaatgtgtttcacatctg 132141 Query: 580 atta 583 |||| Sbjct: 132140 atta 132137 Score = 228 bits (115), Expect = 8e-58 Identities = 244/283 (86%), Gaps = 8/283 (2%) Strand = Plus / Minus Query: 50 cttcatattatttaattttcagcatcgttttcctcactattgggaattat----attata 105 |||||||||||||||||||||| | |||||||||||||||||||||| || ||| Sbjct: 133041 cttcatattatttaattttcagtcaccctttcctcactattgggaattatgattatcata 132982 Query: 106 attatgtagcagtcttgtttcgagctctgctgtgcagaaattgatatatgaaaacaacac 165 ||||| | |||||||||||| ||||||||| | ||| | |||||||||||| | ||||| Sbjct: 132981 attatctggcagtcttgttttgagctctgcagcgcaaatattgatatatgacatcaacag 132922 Query: 166 tggaattcaacatgttgagttattgattgtgcgtagcagtgtatctatacagtttatagc 225 |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 132921 tggaattcaacatgttgagttattgattgt--gtagcagtgtagctatacaatttatagt 132864 Query: 226 aatgaaagggggaggctataataaaaataatgtcaagttccgaacagtttatcaacattt 285 |||| | | | | |||||||| ||||||||||| |||||| || |||| ||||||||| Sbjct: 132863 aatgcga-gagaaagctataatgaaaataatgtc-agttccaaaacgtttgtcaacattt 132806 Query: 286 tcctgccccacatccttttcttacttccctaacacaactttta 328 ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 132805 tcctgccccacatccttttctcacttccctgacacaactttta 132763 Score = 40.1 bits (20), Expect = 0.38 Identities = 22/23 (95%) Strand = Plus / Minus Query: 628 atgacattaaggatcctttnact 650 ||||||||||||||||||| ||| Sbjct: 132095 atgacattaaggatccttttact 132073 >gi|60353140|gb|DN220113.1|DN220113 MEST1095_E02.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 690 Score = 276 bits (139), Expect = 4e-72 Identities = 139/139 (100%) Strand = Plus / Minus Query: 389 caggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagct 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 551 caggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagct 492 Query: 449 ggtgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatg 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 ggtgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatg 432 Query: 509 gttatcttccccaattatg 527 ||||||||||||||||||| Sbjct: 431 gttatcttccccaattatg 413 Score = 46.1 bits (23), Expect = 0.006 Identities = 35/41 (85%) Strand = Plus / Minus Query: 610 gaaagcagcattnnnnntatgacattaaggatcctttnact 650 |||||||||||| |||||||||||||||||||| ||| Sbjct: 413 gaaagcagcattgactgtatgacattaaggatccttttact 373 >gi|76015873|gb|DT943043.1|DT943043 ZM_BFb0128M09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 789 Score = 272 bits (137), Expect = 6e-71 Identities = 137/137 (100%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 399 Query: 451 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 459 Query: 511 tatcttccccaattatg 527 ||||||||||||||||| Sbjct: 460 tatcttccccaattatg 476 Score = 46.1 bits (23), Expect = 0.006 Identities = 35/41 (85%) Strand = Plus / Plus Query: 610 gaaagcagcattnnnnntatgacattaaggatcctttnact 650 |||||||||||| |||||||||||||||||||| ||| Sbjct: 476 gaaagcagcattgactgtatgacattaaggatccttttact 516 >gi|76015599|gb|DT942769.1|DT942769 ZM_BFb0128G08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 835 Score = 256 bits (129), Expect = 3e-66 Identities = 135/137 (98%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 ggatgctggaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 739 Query: 451 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 510 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 740 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaatgttgacatggt 799 Query: 511 tatcttccccaattatg 527 ||||||||||||||||| Sbjct: 800 tatcttccccaattatg 816 >gi|71431125|gb|DR812175.1|DR812175 ZM_BFb0040M01.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 862 Score = 234 bits (118), Expect = 1e-59 Identities = 132/137 (96%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 ggatgctggaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 767 Query: 451 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 510 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | Sbjct: 768 tgcccgagagtactccctgaggcgattgcttttagatgttcctgaacatgttgacatgnt 827 Query: 511 tatcttccccaattatg 527 ||||||||||||||||| Sbjct: 828 tatcttccccaattatg 844 >gi|60358895|gb|DN225868.1|DN225868 MEST1180_E09.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 559 Score = 216 bits (109), Expect = 3e-54 Identities = 109/109 (100%) Strand = Plus / Minus Query: 419 ctcgatactgatgagttgattcatccagctggtgcccgagagtactccctgaggcgattg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 ctcgatactgatgagttgattcatccagctggtgcccgagagtactccctgaggcgattg 500 Query: 479 cttttagatgttcctgacaacgttgacatggttatcttccccaattatg 527 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 cttttagatgttcctgacaacgttgacatggttatcttccccaattatg 451 Score = 46.1 bits (23), Expect = 0.006 Identities = 35/41 (85%) Strand = Plus / Minus Query: 610 gaaagcagcattnnnnntatgacattaaggatcctttnact 650 |||||||||||| |||||||||||||||||||| ||| Sbjct: 451 gaaagcagcattgactgtatgacattaaggatccttttact 411 >gi|71422473|gb|DR805741.1|DR805741 ZM_BFb0031F21.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 795 Score = 163 bits (82), Expect = 4e-38 Identities = 85/86 (98%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ggatgctggaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 769 Query: 451 tgcccgagagtactccctgaggcgat 476 |||||||||||||||||||||||||| Sbjct: 770 tgcccgagagtactccctgaggcgat 795 >gi|71442157|gb|DR823207.1|DR823207 ZM_BFb0064E03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 815 Score = 131 bits (66), Expect = 1e-28 Identities = 75/78 (96%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450 ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 738 ggatgctggaatggattggatcattcacctcgatactgatgaagtgattcatccagctgg 797 Query: 451 tgcccgagagtactccct 468 |||||||||||||||||| Sbjct: 798 tgcccgagagtactccct 815 >gi|74235534|gb|DT643448.1|DT643448 ZM_BFb0102H03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 852 Score = 107 bits (54), Expect = 2e-21 Identities = 57/58 (98%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagct 448 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 ggatgctggaatggattggatcattcacctcgatactgatgagttgattcatccagct 852 >gi|57790140|gb|AC149819.2| Zea mays clone ZMMBBb0500A22, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces Length = 113934 Score = 69.9 bits (35), Expect = 4e-10 Identities = 50/55 (90%) Strand = Plus / Minus Query: 364 gtgaatgtcccccgtttgattgtcacaggatgctagaatggattggatcattcac 418 |||||||||||| ||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 57750 gtgaatgtcccctttttgactgtaacaggatgctagaatggactggatcattcac 57696 >gi|71771604|gb|DR969541.1|DR969541 ZM_BFb0091F09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 753 Score = 42.1 bits (21), Expect = 0.097 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 ggatgctagaatggattggatcatt 415 ||||||| ||||||||||||||||| Sbjct: 729 ggatgctggaatggattggatcatt 753 >gi|91176481|gb|AC184843.1| Zea mays chromosome UNK clone CH201-135H6; ZMMBBc0135H06, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces Length = 185184 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 ctcttcatattatttaatt 66 ||||||||||||||||||| Sbjct: 50896 ctcttcatattatttaatt 50914 >gi|91872876|gb|EB402833.1|EB402833 ZM_BFb0309N14.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 571 Score = 36.2 bits (18), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 47 gctcttcatattatttaatttt 68 ||||||||||||||| |||||| Sbjct: 513 gctcttcatattattaaatttt 492 >gi|92797497|dbj|DD118804.1| MAIZE YELLOW STRIPE1 AND RELATED GENES Length = 83698 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 51 ttcatattatttaatttt 68 |||||||||||||||||| Sbjct: 18190 ttcatattatttaatttt 18207 >gi|25273651|emb|AX540653.1| Sequence 9 from Patent WO0240688 Length = 83698 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 51 ttcatattatttaatttt 68 |||||||||||||||||| Sbjct: 18190 ttcatattatttaatttt 18207 >gi|92110185|gb|AC185322.1| Zea mays chromosome UNK clone CH201-153E14; ZMMBBc0153E14, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces Length = 182772 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 327 taggatacaaccttttgt 344 |||||||||||||||||| Sbjct: 110666 taggatacaaccttttgt 110683 >gi|89515019|gb|AC183656.1| Zea mays chromosome UNK clone CH201-326N8; ZMMBBc0326N08, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces Length = 166361 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 327 taggatacaaccttttgt 344 |||||||||||||||||| Sbjct: 156011 taggatacaaccttttgt 156028 >gi|89365855|gb|AC183589.1| Zea mays chromosome UNK clone ZMMBBb-620I24; ZMMBBb0620I24, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces Length = 150170 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 327 taggatacaaccttttgt 344 |||||||||||||||||| Sbjct: 5395 taggatacaaccttttgt 5412 >gi|57790160|gb|AC150631.2| Zea mays clone ZMMBBc0109E01, *** SEQUENCING IN PROGRESS ***, 9 ordered pieces Length = 178354 Score = 36.2 bits (18), Expect = 6.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 99 tattataattatgtagca 116 |||||||||||||||||| Sbjct: 113954 tattataattatgtagca 113971 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 174,264 Number of Sequences: 836351 Number of extensions: 174264 Number of successful extensions: 11476 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11409 Number of HSP's gapped (non-prelim): 63 length of query: 732 length of database: 669,372,029 effective HSP length: 19 effective length of query: 713 effective length of database: 653,481,360 effective search space: 465932209680 effective search space used: 465932209680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)