BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAF31c07.yg.2.1 (352 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|76015873|gb|DT943043.1|DT943043 ZM_BFb0128M09.r ZM_BFb Zea ma... 367 e-100 gi|60353140|gb|DN220113.1|DN220113 MEST1095_E02.T7-1 UGA-ZmSAM-X... 264 7e-69 gi|71422473|gb|DR805741.1|DR805741 ZM_BFb0031F21.r ZM_BFb Zea ma... 240 1e-61 gi|71431125|gb|DR812175.1|DR812175 ZM_BFb0040M01.r ZM_BFb Zea ma... 240 1e-61 gi|71442157|gb|DR823207.1|DR823207 ZM_BFb0064E03.r ZM_BFb Zea ma... 240 1e-61 gi|71771604|gb|DR969541.1|DR969541 ZM_BFb0091F09.r ZM_BFb Zea ma... 240 1e-61 gi|71773344|gb|DR971248.1|DR971248 ZM_BFb0093N18.r ZM_BFb Zea ma... 240 1e-61 gi|74235534|gb|DT643448.1|DT643448 ZM_BFb0102H03.r ZM_BFb Zea ma... 240 1e-61 gi|76015599|gb|DT942769.1|DT942769 ZM_BFb0128G08.r ZM_BFb Zea ma... 240 1e-61 gi|93015988|gb|EB641508.1|EB641508 ZM_BFb0331C08.r ZM_BFb Zea ma... 240 1e-61 gi|58082471|gb|AC155612.2| Zea mays strain B73 clone ZMMBBc0286H... 240 1e-61 gi|50322462|gb|CO517588.1|CO517588 3530_1_114_1_D04.y_1 3530 - F... 36 2.8 gi|78091058|gb|DV519432.1|DV519432 ZM_BFb0203N14.r ZM_BFb Zea ma... 36 2.8 gi|90186364|gb|AC183890.1| Zea mays chromosome UNK clone CH201-5... 36 2.8 >gi|76015873|gb|DT943043.1|DT943043 ZM_BFb0128M09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 789 Score = 367 bits (185), Expect = e-100 Identities = 251/284 (88%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 139 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 199 Query: 121 cagctnnnacctctgttcttgaatctattcagccgcatttggaatgagacttgnnnagca 180 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 200 cagctgtcacctctgttcttgaatctattcagccgcatttggaatgagacttggctagca 259 Query: 181 ggtnnnttttacaagccnnnnnattacgaactnnnnnnnnagcaannnctaaacatggaa 240 ||| ||||||||||| |||||||||| ||||| |||||||||||| Sbjct: 260 ggtttcttttacaagccgtgtaattacgaactatttgtcaagcaatcactaaacatggaa 319 Query: 241 atgnnnattattatgnnnagggatgctagaatggattnnatcat 284 ||| ||||||||| ||||||||||||||||||| ||||| Sbjct: 320 atggctattattatggcaagggatgctagaatggattggatcat 363 >gi|60353140|gb|DN220113.1|DN220113 MEST1095_E02.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 690 Score = 264 bits (133), Expect = 7e-69 Identities = 139/142 (97%) Strand = Plus / Minus Query: 11 cacgggaagcacatctgctggcctacaccagattcttccatggttgtattatcacaatgt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 690 cacgggaagcacatctgctggcctacaccagattcttccatggttgtattatcacaatgt 631 Query: 71 cattggtgtttcacatttctttctattagttgaaggagaggctgcaaagccagctnnnac 130 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 630 cattggtgtttcacatttctttctattagttgaaggagaggctgcaaagccagctgtcac 571 Query: 131 ctctgttcttgaatctattcag 152 |||||||||||||||||||||| Sbjct: 570 ctctgttcttgaatctattcag 549 Score = 36.2 bits (18), Expect = 2.8 Identities = 22/24 (91%) Strand = Plus / Minus Query: 261 ggatgctagaatggattnnatcat 284 ||||||||||||||||| ||||| Sbjct: 549 ggatgctagaatggattggatcat 526 >gi|71422473|gb|DR805741.1|DR805741 ZM_BFb0031F21.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 795 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 397 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 456 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 457 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 516 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 517 cagctgtcacctctgttcttgaatctattc 546 Score = 71.9 bits (36), Expect = 5e-11 Identities = 102/134 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 600 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 659 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 660 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 719 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 720 atggattggatcat 733 >gi|71431125|gb|DR812175.1|DR812175 ZM_BFb0040M01.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 862 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 395 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 454 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 455 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 514 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 515 cagctgtcacctctgttcttgaatctattc 544 Score = 71.9 bits (36), Expect = 5e-11 Identities = 102/134 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 598 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 657 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 658 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 717 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 718 atggattggatcat 731 >gi|71442157|gb|DR823207.1|DR823207 ZM_BFb0064E03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 815 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 425 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 484 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 485 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 544 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 545 cagctgtcacctctgttcttgaatctattc 574 Score = 71.9 bits (36), Expect = 5e-11 Identities = 102/134 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 628 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 687 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 688 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 747 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 748 atggattggatcat 761 >gi|71771604|gb|DR969541.1|DR969541 ZM_BFb0091F09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 753 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 416 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 475 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 476 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 535 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 536 cagctgtcacctctgttcttgaatctattc 565 Score = 63.9 bits (32), Expect = 1e-08 Identities = 101/134 (75%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 619 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 678 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||| ||||| ||||||||| ||||||||| || Sbjct: 679 ctatttgtcaagcaatcactaaacatgaaaatggctattattatggcaagggatgctgga 738 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 739 atggattggatcat 752 >gi|71773344|gb|DR971248.1|DR971248 ZM_BFb0093N18.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 755 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 428 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 487 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 488 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 547 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 548 cagctgtcacctctgttcttgaatctattc 577 Score = 65.9 bits (33), Expect = 3e-09 Identities = 95/125 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 631 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 690 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 691 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 750 Query: 271 atgga 275 ||||| Sbjct: 751 atgga 755 >gi|74235534|gb|DT643448.1|DT643448 ZM_BFb0102H03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 852 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 482 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 541 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 542 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 601 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 602 cagctgtcacctctgttcttgaatctattc 631 Score = 71.9 bits (36), Expect = 5e-11 Identities = 102/134 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 685 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 744 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 745 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 804 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 805 atggattggatcat 818 >gi|76015599|gb|DT942769.1|DT942769 ZM_BFb0128G08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 835 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 367 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 426 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 427 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 486 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 487 cagctgtcacctctgttcttgaatctattc 516 Score = 71.9 bits (36), Expect = 5e-11 Identities = 102/134 (76%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattacgaa 210 |||||||||||||||||||| || ||||||| ||||||||||| |||||||| Sbjct: 570 agccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattacgaa 629 Query: 211 ctnnnnnnnnagcaannnctaaacatggaaatgnnnattattatgnnnagggatgctaga 270 || ||||| ||||||||||||||| ||||||||| ||||||||| || Sbjct: 630 ctatttgtcaagcaatcactaaacatggaaatggctattattatggcaagggatgctgga 689 Query: 271 atggattnnatcat 284 ||||||| ||||| Sbjct: 690 atggattggatcat 703 >gi|93015988|gb|EB641508.1|EB641508 ZM_BFb0331C08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 740 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Plus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 434 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 493 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 494 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 553 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 554 cagctgtcacctctgttcttgaatctattc 583 Score = 50.1 bits (25), Expect = 2e-04 Identities = 40/47 (85%) Strand = Plus / Plus Query: 151 agccgcatttggaatgagacttgnnnagcaggtnnnttttacaagcc 197 |||||||||||||||||||| || ||||||| ||||||||||| Sbjct: 637 agccgcatttggaatgagacgtggctagcaggtttcttttacaagcc 683 >gi|58082471|gb|AC155612.2| Zea mays strain B73 clone ZMMBBc0286H14, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces Length = 189608 Score = 240 bits (121), Expect = 1e-61 Identities = 142/150 (94%) Strand = Plus / Minus Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 133926 agatctgtatcacgggaagcacatctgctagcctacaccagattcttccatggttgtatt 133867 Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120 ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 133866 atcacaaggtcattggtgtttcccatttctttctttttgttgaaggagaggctgcaaagc 133807 Query: 121 cagctnnnacctctgttcttgaatctattc 150 ||||| |||||||||||||||||||||| Sbjct: 133806 cagctgtcacctctgttcttgaatctattc 133777 Score = 58.0 bits (29), Expect = 8e-07 Identities = 82/108 (75%) Strand = Plus / Minus Query: 148 ttcagccgcatttggaatgagacttgnnnagcaggtnnnttttacaagccnnnnnattac 207 ||||||||||||||||||||||| || ||||||| ||||||||||| ||||| Sbjct: 133275 ttcagccgcatttggaatgagacgtggctagcaggtttcttttacaagccgtgtaattac 133216 Query: 208 gaactnnnnnnnnagcaannnctaaacatggaaatgnnnattattatg 255 ||||| ||||| ||||||||||||||| ||||||||| Sbjct: 133215 gaactatttgtcaagcaatcactaaacatggaaatggctattattatg 133168 >gi|50322462|gb|CO517588.1|CO517588 3530_1_114_1_D04.y_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence Length = 797 Score = 36.2 bits (18), Expect = 2.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 102 gaaggagaggctgcaaag 119 |||||||||||||||||| Sbjct: 271 gaaggagaggctgcaaag 254 >gi|78091058|gb|DV519432.1|DV519432 ZM_BFb0203N14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 562 Score = 36.2 bits (18), Expect = 2.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 102 gaaggagaggctgcaaag 119 |||||||||||||||||| Sbjct: 148 gaaggagaggctgcaaag 131 >gi|90186364|gb|AC183890.1| Zea mays chromosome UNK clone CH201-541A21; ZMMBBc0541A21, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces Length = 179834 Score = 36.2 bits (18), Expect = 2.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 102 gaaggagaggctgcaaag 119 |||||||||||||||||| Sbjct: 161535 gaaggagaggctgcaaag 161552 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 55,054 Number of Sequences: 836351 Number of extensions: 55054 Number of successful extensions: 3922 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3887 Number of HSP's gapped (non-prelim): 35 length of query: 352 length of database: 669,372,029 effective HSP length: 19 effective length of query: 333 effective length of database: 653,481,360 effective search space: 217609292880 effective search space used: 217609292880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)