BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAF14f01.yg.2.1 (319 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|67023050|gb|CO451799.1|CO451799 MZCCL10168D01.g Maize Endospe... 355 2e-96 gi|71428289|gb|DR809339.1|DR809339 ZM_BFb0036H22.r ZM_BFb Zea ma... 347 5e-94 gi|91048314|gb|EB158732.1|EB158732 ZM_BFb0292F05.r ZM_BFb Zea ma... 347 5e-94 gi|67017651|gb|CO446400.1|CO446400 MZCCL10102E01.g Maize Endospe... 182 2e-44 gi|76015073|gb|DT942243.1|DT942243 ZM_BFb0127F02.r ZM_BFb Zea ma... 60 2e-07 gi|88747279|gb|DY531420.1|DY531420 ZM_BFb0250D13.r ZM_BFb Zea ma... 36 2.5 gi|31353256|gb|CD437613.1|CD437613 EL01N0503A05.b Endosperm_5 Ze... 34 10.0 gi|33093374|gb|CF053368.1|CF053368 QCN15h04.yg QCN Zea mays cDNA... 34 10.0 gi|71430967|gb|DR812017.1|DR812017 ZM_BFb0040I10.r ZM_BFb Zea ma... 34 10.0 gi|92899562|gb|AC185410.1| Zea mays chromosome UNK clone ZMMBBb-... 34 10.0 gi|88024639|gb|AC182622.1| Zea mays chromosome UNK clone CH201-1... 34 10.0 gi|58082456|gb|AC155597.2| Zea mays strain B73 clone ZMMBBc0216K... 34 10.0 gi|58082432|gb|AC155573.2| Zea mays strain B73 clone ZMMBBc0177D... 34 10.0 >gi|67023050|gb|CO451799.1|CO451799 MZCCL10168D01.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 932 Score = 355 bits (179), Expect = 2e-96 Identities = 248/282 (87%) Strand = Plus / Minus Query: 20 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 360 Query: 80 catgccatgacttatccannngcttggtattgccnnnaannnnnnnnnncccagctgtta 139 |||||||||||||||||| ||||||||||||| || ||||||||||| Sbjct: 359 catgccatgacttatccagtggcttggtattgccgtaaaaggacatcagcccagctgtta 300 Query: 140 gaatggatnnnggatcccacagctcnnnatcctcattcatttccatatactgatggaaca 199 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 299 gaatggatgtaggatcccacagctcgccatcctcattcatttccatatactgatggaaca 240 Query: 200 attctgtgcaaccatcccgnnnnnatnnntcaagnnngaacacatttaccccatatgccc 259 ||||||||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct: 239 attctgtgcaaccatcccgccgccatgtctcaaggtcgaacacatttaccccatatgccc 180 Query: 260 atgcacaggcattgggattgaatcgatcccgcacaatgggct 301 |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 179 atgcacaggcattgggattgaaacgatcccgcacaatgggct 138 >gi|71428289|gb|DR809339.1|DR809339 ZM_BFb0036H22.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 911 Score = 347 bits (175), Expect = 5e-94 Identities = 247/282 (87%) Strand = Plus / Plus Query: 20 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 225 Query: 80 catgccatgacttatccannngcttggtattgccnnnaannnnnnnnnncccagctgtta 139 |||||||||||||||||| ||||||||||||| || ||||||||||| Sbjct: 226 catgccatgacttatccagtggcttggtattgccgtaaaaggacatcagcccagctgtta 285 Query: 140 gaatggatnnnggatcccacagctcnnnatcctcattcatttccatatactgatggaaca 199 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 286 gaatggatgtaggatcccacagctcgccatcctcattcatttccatatactgatggaaca 345 Query: 200 attctgtgcaaccatcccgnnnnnatnnntcaagnnngaacacatttaccccatatgccc 259 ||||||||||||||||||| || ||||| |||||||||||| |||||||||| Sbjct: 346 attctgtgcaaccatcccgccgccatgtctcaaggtcgaacacatttacgccatatgccc 405 Query: 260 atgcacaggcattgggattgaatcgatcccgcacaatgggct 301 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 406 atgcacaggcattgggcttgaatcgatcccgcacaatgggct 447 >gi|91048314|gb|EB158732.1|EB158732 ZM_BFb0292F05.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 796 Score = 347 bits (175), Expect = 5e-94 Identities = 247/282 (87%) Strand = Plus / Plus Query: 20 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 225 Query: 80 catgccatgacttatccannngcttggtattgccnnnaannnnnnnnnncccagctgtta 139 |||||||||||||||||| ||||||||||||| || ||||||||||| Sbjct: 226 catgccatgacttatccagtggcttggtattgccgtaaaaggacatcagcccagctgtta 285 Query: 140 gaatggatnnnggatcccacagctcnnnatcctcattcatttccatatactgatggaaca 199 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 286 gaatggatgtaggatcccacagctcgccatcctcattcatttccatatactgatggaaca 345 Query: 200 attctgtgcaaccatcccgnnnnnatnnntcaagnnngaacacatttaccccatatgccc 259 ||||||||||||||||||| || ||||| |||||||||||| |||||||||| Sbjct: 346 attctgtgcaaccatcccgccgccatgtctcaaggtcgaacacatttacgccatatgccc 405 Query: 260 atgcacaggcattgggattgaatcgatcccgcacaatgggct 301 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 406 atgcacaggcattgggcttgaatcgatcccgcacaatgggct 447 >gi|67017651|gb|CO446400.1|CO446400 MZCCL10102E01.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 609 Score = 182 bits (92), Expect = 2e-44 Identities = 136/158 (86%) Strand = Plus / Minus Query: 20 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 ccactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccatta 273 Query: 80 catgccatgacttatccannngcttggtattgccnnnaannnnnnnnnncccagctgtta 139 |||||||||||||||||| ||||||||||||| || ||||||||||| Sbjct: 272 catgccatgacttatccagtggcttggtattgccgtaaaaggacatcagcccagctgtta 213 Query: 140 gaatggatnnnggatcccacagctcnnnatcctcattc 177 |||||||| |||||||||||||| |||||||||| Sbjct: 212 gaatggatgtaggatcccacagctcgccatcctcattc 175 >gi|76015073|gb|DT942243.1|DT942243 ZM_BFb0127F02.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 889 Score = 60.0 bits (30), Expect = 2e-07 Identities = 42/48 (87%) Strand = Plus / Minus Query: 130 ccagctgttagaatggatnnnggatcccacagctcnnnatcctcattc 177 |||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 889 ccagctgttagaatggatgtaggatcccacagctcgccatcctcattc 842 >gi|88747279|gb|DY531420.1|DY531420 ZM_BFb0250D13.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 638 Score = 36.2 bits (18), Expect = 2.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 129 cccagctgttagaatgga 146 |||||||||||||||||| Sbjct: 58 cccagctgttagaatgga 75 >gi|31353256|gb|CD437613.1|CD437613 EL01N0503A05.b Endosperm_5 Zea mays cDNA, mRNA sequence Length = 871 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Plus Query: 260 atgcacaggcattggga 276 ||||||||||||||||| Sbjct: 569 atgcacaggcattggga 585 >gi|33093374|gb|CF053368.1|CF053368 QCN15h04.yg QCN Zea mays cDNA clone QCN15h04, mRNA sequence Length = 607 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Plus Query: 202 tctgtgcaaccatcccg 218 ||||||||||||||||| Sbjct: 470 tctgtgcaaccatcccg 486 >gi|71430967|gb|DR812017.1|DR812017 ZM_BFb0040I10.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 790 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Plus Query: 260 atgcacaggcattggga 276 ||||||||||||||||| Sbjct: 603 atgcacaggcattggga 619 >gi|92899562|gb|AC185410.1| Zea mays chromosome UNK clone ZMMBBb-559P6; ZMMBBb0559P06, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces Length = 109629 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Minus Query: 180 ttccatatactgatgga 196 ||||||||||||||||| Sbjct: 103564 ttccatatactgatgga 103548 >gi|88024639|gb|AC182622.1| Zea mays chromosome UNK clone CH201-134C10, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces Length = 163376 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Plus Query: 275 gattgaatcgatcccgc 291 ||||||||||||||||| Sbjct: 53392 gattgaatcgatcccgc 53408 >gi|58082456|gb|AC155597.2| Zea mays strain B73 clone ZMMBBc0216K08, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces Length = 184752 Score = 34.2 bits (17), Expect = 10.0 Identities = 20/21 (95%) Strand = Plus / Minus Query: 259 catgcacaggcattgggattg 279 |||||||||||||||| |||| Sbjct: 137593 catgcacaggcattggcattg 137573 >gi|58082432|gb|AC155573.2| Zea mays strain B73 clone ZMMBBc0177D20, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces Length = 166705 Score = 34.2 bits (17), Expect = 10.0 Identities = 17/17 (100%) Strand = Plus / Minus Query: 260 atgcacaggcattggga 276 ||||||||||||||||| Sbjct: 33963 atgcacaggcattggga 33947 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 46,478 Number of Sequences: 836351 Number of extensions: 46478 Number of successful extensions: 2922 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2902 Number of HSP's gapped (non-prelim): 17 length of query: 319 length of database: 669,372,029 effective HSP length: 19 effective length of query: 300 effective length of database: 653,481,360 effective search space: 196044408000 effective search space used: 196044408000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)