BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 5351892.2.1 (466 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|9255032|gb|BE345500.1|BE345500 946035D02.y1 946 - tassel prim... 864 0.0 gi|9255031|gb|BE345499.1|BE345499 946035D02.x1 946 - tassel prim... 839 0.0 gi|58082449|gb|AC155590.2| Zea mays strain B73 clone ZMMBBc0203A... 787 0.0 gi|17970053|gb|BM276820.1|BM276820 952012D08.y1 952 - BMS tissue... 682 0.0 gi|45679611|gb|BV140088.1| PZA00532 Zea mays ssp. parviglumis Wi... 678 0.0 gi|45679605|gb|BV140082.1| PZA00532 Zea mays ssp. parviglumis CI... 652 0.0 gi|45679597|gb|BV140074.1| PZA00532 Zea mays ssp. parviglumis JS... 652 0.0 gi|45679603|gb|BV140080.1| PZA00532 Zea mays ssp. parviglumis JS... 644 0.0 gi|45679602|gb|BV140079.1| PZA00532 Zea mays ssp. parviglumis JS... 644 0.0 gi|45679601|gb|BV140078.1| PZA00532 Zea mays ssp. parviglumis JS... 644 0.0 gi|45679599|gb|BV140076.1| PZA00532 Zea mays ssp. parviglumis CI... 638 0.0 gi|45679609|gb|BV140086.1| PZA00532 Zea mays ssp. parviglumis Ka... 622 e-177 gi|45679607|gb|BV140084.1| PZA00532 Zea mays ssp. parviglumis JS... 622 e-177 gi|45679600|gb|BV140077.1| PZA00532 Zea mays ssp. parviglumis JS... 622 e-177 gi|45679604|gb|BV140081.1| PZA00532 Zea mays ssp. parviglumis JS... 611 e-173 gi|31250273|gb|CD219297.1|CD219297 EST0194 Zea mays embryo sac c... 609 e-172 gi|21217164|gb|AY112574.1| Zea mays CL17884_1 mRNA sequence 589 e-166 gi|21217164|gb|AY112574.1| Zea mays CL17884_1 mRNA sequence 589 e-166 gi|45679608|gb|BV140085.1| PZA00532 Zea mays ssp. parviglumis Be... 587 e-166 gi|45679598|gb|BV140075.1| PZA00532 Zea mays ssp. parviglumis JS... 587 e-166 gi|45679610|gb|BV140087.1| PZA00532 Zea mays ssp. parviglumis Be... 472 e-131 gi|45679606|gb|BV140083.1| PZA00532 Zea mays ssp. parviglumis US... 412 e-113 gi|22489384|gb|BU049307.1|BU049307 1111005C06.y3 1111 - Unigene ... 186 2e-45 gi|32824553|gb|CD964275.1|CD964275 SEB_14 GeneTag2 Zea mays cDNA... 56 4e-06 gi|32791196|gb|CD943432.1|CD943432 RCQ_41 GeneTag1 Zea mays cDNA... 48 0.001 gi|88900594|gb|AC183306.1| Zea mays chromosome UNK clone ZMMBBb-... 40 0.24 gi|55975245|gb|AC152916.1| Zea mays chromosome 2 clone Z377J20 m... 40 0.24 gi|51315580|gb|AC146975.4| Zea mays clone ZMMBBb0357I20, *** SEQ... 40 0.24 gi|90265907|gb|AC183914.1| Zea mays chromosome UNK clone CH201-2... 38 0.95 gi|7135696|gb|AW498219.1|AW498219 660044B05.x2 660 - Mixed stage... 36 3.8 gi|18661366|gb|BM501375.1|BM501375 PAC000000000670 Pioneer AF-1 ... 36 3.8 gi|18963606|gb|BM660529.1|BM660529 952039C08.y1 952 - BMS tissue... 36 3.8 gi|20301550|gb|BQ164493.1|BQ164493 1091020H12.y3 1091 - Immature... 36 3.8 gi|26456488|gb|CA828071.1|CA828071 1114023D02.y2 1114 - Unigene ... 36 3.8 gi|37377856|gb|CF625571.1|CF625571 zmrws05_0A21-002-d10.s3 zmrws... 36 3.8 gi|40303029|gb|CK347416.1|CK347416 zmrsub1_0A20-004-d03.s4 zmrsu... 36 3.8 gi|67015405|gb|CO444154.1|CO444154 MZCCL10068G04.g Maize Endospe... 36 3.8 gi|74234141|gb|DT642055.1|DT642055 ZM_BFb0100G15.f ZM_BFb Zea ma... 36 3.8 gi|76013701|gb|DT940871.1|DT940871 ZM_BFb0123O05.f ZM_BFb Zea ma... 36 3.8 gi|87153267|gb|DY398056.1|DY398056 III-952-6A-G04.M13-R UGIII-Re... 36 3.8 gi|88749193|gb|DY533334.1|DY533334 ZM_BFb0263O15.f ZM_BFb Zea ma... 36 3.8 gi|92110170|gb|AC185307.1| Zea mays chromosome UNK clone CH201-3... 36 3.8 gi|89572704|gb|AC183758.1| Zea mays chromosome UNK clone CH201-1... 36 3.8 gi|89179595|gb|AC183437.1| Zea mays chromosome UNK clone CH201-3... 36 3.8 gi|89257797|gb|AC177927.2| Zea mays chromosome UNK clone CH201-1... 36 3.8 >gi|9255032|gb|BE345500.1|BE345500 946035D02.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence Length = 445 Score = 864 bits (436), Expect = 0.0 Identities = 436/436 (100%) Strand = Plus / Plus Query: 22 cgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgcca 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgcca 60 Query: 82 tgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcgaggaaggaca 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcgaggaaggaca 120 Query: 142 ccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggggctca 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggggctca 180 Query: 202 agattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggactcacggcagac 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggactcacggcagac 240 Query: 262 ttgcttgctaactagggcagaactattgttatgcttattcttattcttcttctgcgaaac 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ttgcttgctaactagggcagaactattgttatgcttattcttattcttcttctgcgaaac 300 Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 360 Query: 382 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgtttac 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgtttac 420 Query: 442 tatgtgatcatcgctc 457 |||||||||||||||| Sbjct: 421 tatgtgatcatcgctc 436 >gi|9255031|gb|BE345499.1|BE345499 946035D02.x1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence Length = 434 Score = 839 bits (423), Expect = 0.0 Identities = 433/435 (99%), Gaps = 1/435 (0%) Strand = Plus / Minus Query: 1 ggcacgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 ggcacgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccag 375 Query: 61 acccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 acccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacg 315 Query: 121 actgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 actgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcg 255 Query: 181 aggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 aggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatc 195 Query: 241 tggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgcttatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 tggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgcttatt 135 Query: 301 cttattcttcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctgtatt 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 cttattcttcttttgcgaaacaaaggaaccatacaaaatgtattctttccctcctgtatt 75 Query: 361 tgatccaagtgtagatagttgatagacagatccattaatctgttcatcctctgatgtcaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 74 tgatccaagtgtagatagttgatagacagatccattaatctgttcatcctctgatgtc-a 16 Query: 421 aaggaagagaaacat 435 ||||||||||||||| Sbjct: 15 aaggaagagaaacat 1 >gi|58082449|gb|AC155590.2| Zea mays strain B73 clone ZMMBBc0203A06, *** SEQUENCING IN PROGRESS ***, 32 unordered pieces Length = 188872 Score = 787 bits (397), Expect = 0.0 Identities = 439/451 (97%), Gaps = 9/451 (1%) Strand = Plus / Plus Query: 9 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87190 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 87249 Query: 69 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87250 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 87309 Query: 129 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87310 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 87369 Query: 189 agctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcagg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87370 agctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcagg 87429 Query: 249 actcacggcagacttgcttgctaactagggcagaactattgttatgcttattcttattct 308 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 87430 actcacggcagacttgcttgctaactagggcagaactattg------ttattcttattct 87483 Query: 309 tcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcctgtatttgatcc 366 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87484 taatctgcgaaacacaaaggaaccatacaaaatgtattctttccctcctgtatttgatcc 87543 Query: 367 aagtgtagatagttgatagacagatccattaatctgttcatcctctgatgtcaaaaggaa 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87544 aagtgtagatagttgatagacagatccattaatctgttcatcctctgatgtcaaaaggaa 87603 Query: 427 gagaaacatgtttactatgtgatcatcgctc 457 |||||||||||||||||| | |||||||||| Sbjct: 87604 gagaaacatgtttactatat-atcatcgctc 87633 >gi|17970053|gb|BM276820.1|BM276820 952012D08.y1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 388 Score = 682 bits (344), Expect = 0.0 Identities = 365/372 (98%) Strand = Plus / Minus Query: 72 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcg 131 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 387 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttttacgactgcaaggcg 328 Query: 132 aggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagc 191 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 327 aggaaggaccccgatttgggcaaggtagtgccttacgtgaggccctgcgaggacgtgagc 268 Query: 192 tgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggact 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 tgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggact 208 Query: 252 cacggcagacttgcttgctaactagggcagaactattgttatgcttattcttattcttct 311 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct: 207 cacggcagacttgcttgctaactagggcagaactattgttatgcttatttttattttttt 148 Query: 312 tctgcgaaacaaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtg 371 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 tttgcgaaacaaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtg 88 Query: 372 tagatagttgatagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaa 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 tagatagttgatagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaa 28 Query: 432 acatgtttacta 443 |||||||||||| Sbjct: 27 acatgtttacta 16 >gi|45679611|gb|BV140088.1| PZA00532 Zea mays ssp. parviglumis Wilkes Site 6 Zea mays Wilkes Site 6 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 354 Score = 678 bits (342), Expect = 0.0 Identities = 351/354 (99%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 295 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 294 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 235 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 175 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 174 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttattct 115 Query: 297 tattcttattcttcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 356 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114 tattcttcttcttcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 55 Query: 357 tatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 54 tatttgatccaagtgtagatagctgatagacagatccattaatctgttcatcct 1 >gi|45679605|gb|BV140082.1| PZA00532 Zea mays ssp. parviglumis CIMMYT 11355 Zea mays CIMMYT 11355 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 356 Score = 652 bits (329), Expect = 0.0 Identities = 350/356 (98%), Gaps = 2/356 (0%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 297 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 237 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 177 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 176 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttaatct 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttcttcttcttccgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679597|gb|BV140074.1| PZA00532 Zea mays ssp. parviglumis JSGyLOS 119 Zea mays JSGyLOS 119 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 356 Score = 652 bits (329), Expect = 0.0 Identities = 350/356 (98%), Gaps = 2/356 (0%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 297 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 237 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 177 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 176 aatctggtcaggactcacggcagacttgcttcctaactagggcagaactattgttattct 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttcttcttattctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679603|gb|BV140080.1| PZA00532 Zea mays ssp. parviglumis JSG 374 Zea mays JSG 374 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 347 Score = 644 bits (325), Expect = 0.0 Identities = 334/337 (99%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 288 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 228 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 168 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 167 aatctggtcaggactcacgtcagacttgcttgctaactagggcagaactattgttattct 108 Query: 297 tattcttattcttcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 356 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 tattcttattcctcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 48 Query: 357 tatttgatccaagtgtagatagttgatagacagatcc 393 ||||||||||||||||||||||||||||||||||||| Sbjct: 47 tatttgatccaagtgtagatagttgatagacagatcc 11 >gi|45679602|gb|BV140079.1| PZA00532 Zea mays ssp. parviglumis JSG 378 Zea mays JSG 378 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 347 Score = 644 bits (325), Expect = 0.0 Identities = 334/337 (99%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 288 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 228 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 168 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 167 aatctggtcaggactcacgtcagacttgcttgctaactagggcagaactattgttattct 108 Query: 297 tattcttattcttcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 356 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 tattcttattcctcttctgcgaaacaaaggaaccatacaaaatgtattctttccctcctg 48 Query: 357 tatttgatccaagtgtagatagttgatagacagatcc 393 ||||||||||||||||||||||||||||||||||||| Sbjct: 47 tatttgatccaagtgtagatagttgatagacagatcc 11 >gi|45679601|gb|BV140078.1| PZA00532 Zea mays ssp. parviglumis JSGyLOS 109 Zea mays JSGyLOS 109 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 356 Score = 644 bits (325), Expect = 0.0 Identities = 349/356 (98%), Gaps = 2/356 (0%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 297 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 237 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 177 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 176 aatctggtcaggactcacggcagacttgcttgctaactagggcagaattattgttattgt 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttattcttcttctggaaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679599|gb|BV140076.1| PZA00532 Zea mays ssp. parviglumis CIMMYT 8783 Zea mays CIMMYT 8783 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 350 Score = 638 bits (322), Expect = 0.0 Identities = 348/356 (97%), Gaps = 8/356 (2%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 291 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 231 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 171 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 170 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattg------t 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttattcttcttctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679609|gb|BV140086.1| PZA00532 Zea mays ssp. parviglumis Kato Site 4 Zea mays Kato Site 4 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 350 Score = 622 bits (314), Expect = e-177 Identities = 346/356 (97%), Gaps = 8/356 (2%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 291 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 290 tacgactgcaaggcgaggaaggacaccgatttgggcaaggcagtgccttacgtgaggcac 231 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 171 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 170 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattg------t 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttattcttcttctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagctgatagacagatccattaatctgttcatcct 1 >gi|45679607|gb|BV140084.1| PZA00532 Zea mays ssp. parviglumis JSGyMAS 264 Zea mays JSGyMAS 264 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 350 Score = 622 bits (314), Expect = e-177 Identities = 346/356 (97%), Gaps = 8/356 (2%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 291 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 231 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 171 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 170 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattg------t 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttattcttaatctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679600|gb|BV140077.1| PZA00532 Zea mays ssp. parviglumis JSG 197 Zea mays JSG 197 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 350 Score = 622 bits (314), Expect = e-177 Identities = 346/356 (97%), Gaps = 8/356 (2%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccagacccaccgtgcgtccgtgccatgtccatcgagccgtgcttccatcaagctcccttc 291 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 231 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 171 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 170 aatctggtcaggactcacggcagacttgcttcctaactagggcagaactattg------t 117 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 116 tattcttattcttcttctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 57 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|45679604|gb|BV140081.1| PZA00532 Zea mays ssp. parviglumis JSGyLOS 161 Zea mays JSGyLOS 161 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 344 Score = 611 bits (308), Expect = e-173 Identities = 340/350 (97%), Gaps = 8/350 (2%) Strand = Plus / Minus Query: 63 ccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgac 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 ccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgac 285 Query: 123 tgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgag 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 284 tgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgag 225 Query: 183 gacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctg 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 224 gacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctg 165 Query: 243 gtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgcttattct 302 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 164 gtcaggactcacggcagacttgcttgctaactagggcagaactattg------ttattct 111 Query: 303 tattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcctgtatt 360 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 110 tattcttaatctgcgaaacacaaaggaaccatacaaaatgtattctttccctcctgtatt 51 Query: 361 tgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50 tgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 1 >gi|31250273|gb|CD219297.1|CD219297 EST0194 Zea mays embryo sac cDNA library Zea mays cDNA clone ES0557 5' similar to Galactoside 2-alpha-L-fucosyltransferase, mRNA sequence Length = 734 Score = 609 bits (307), Expect = e-172 Identities = 393/415 (94%), Gaps = 15/415 (3%) Strand = Plus / Plus Query: 9 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccg 357 Query: 69 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 tgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaag 417 Query: 129 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 gcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtg 477 Query: 189 agctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcagg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 agctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcagg 537 Query: 249 actcacggcagacttgcttgctaactagggcagaactattgttatgcttattcttattct 308 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 538 actcacggcagacttgcttgctaactagggcaaaactattg------ttattcttattct 591 Query: 309 tcttctgcgaa--acaaaggaaccatacaaaatgtattc-tttccctcctgta-tttgat 364 | |||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct: 592 taatctgcgaaacacaaaggaaccatac-aaatgtattcttttccctcctgtattttgat 650 Query: 365 ccaagtgtagatagttgatagacagatccattaatctg-ttcatcctctgatgtc 418 ||||| ||| |||||||||| ||| |||| |||||| |||||||||||||||| Sbjct: 651 ccaagggtaaatagttgataaacaaatcc---aatctgattcatcctctgatgtc 702 >gi|21217164|gb|AY112574.1| Zea mays CL17884_1 mRNA sequence Length = 453 Score = 589 bits (297), Expect = e-166 Identities = 307/312 (98%) Strand = Plus / Minus Query: 5 cgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagaccc 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 cgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagaccc 394 Query: 65 accgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactg 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 accgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactg 334 Query: 125 caaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgagga 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 caaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgagga 274 Query: 185 cgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggt 244 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 cgtgagctnnnnnctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggt 214 Query: 245 caggactcacggcagacttgcttgctaactagggcagaactattgttatgcttattctta 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 caggactcacggcagacttgcttgctaactagggcagaactattgttatgcttattctta 154 Query: 305 ttcttcttctgc 316 |||||||||||| Sbjct: 153 ttcttcttctgc 142 Score = 204 bits (103), Expect = 7e-51 Identities = 115/119 (96%) Strand = Plus / Minus Query: 339 tgtattctttccctcctgtatttgatccaagtgtagatagttgatagacagatccattaa 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 tgtattctttccctcctgtatttgatccaagtgtagatagttgatagacagatccattaa 60 Query: 399 tctgttcatcctctgatgtcaaaaggaagagaaacatgtttactatgtgatcatcgctc 457 ||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| Sbjct: 59 tctgttcatcctctgatgtcaaaggaaggggaaacatgtttactatgtgatcatcgctc 1 >gi|21217164|gb|AY112574.1| Zea mays CL17884_1 mRNA sequence Length = 453 Score = 589 bits (297), Expect = e-166 Identities = 307/312 (98%) Strand = Plus / Minus Query: 5 cgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagaccc 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 cgaggccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagaccc 394 Query: 65 accgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactg 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 accgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactg 334 Query: 125 caaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgagga 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 caaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgagga 274 Query: 185 cgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggt 244 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 cgtgagctnnnnnctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggt 214 Query: 245 caggactcacggcagacttgcttgctaactagggcagaactattgttatgcttattctta 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 caggactcacggcagacttgcttgctaactagggcagaactattgttatgcttattctta 154 Query: 305 ttcttcttctgc 316 |||||||||||| Sbjct: 153 ttcttcttctgc 142 Score = 204 bits (103), Expect = 7e-51 Identities = 115/119 (96%) Strand = Plus / Minus Query: 339 tgtattctttccctcctgtatttgatccaagtgtagatagttgatagacagatccattaa 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 tgtattctttccctcctgtatttgatccaagtgtagatagttgatagacagatccattaa 60 Query: 399 tctgttcatcctctgatgtcaaaaggaagagaaacatgtttactatgtgatcatcgctc 457 ||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| Sbjct: 59 tctgttcatcctctgatgtcaaaggaaggggaaacatgtttactatgtgatcatcgctc 1 >gi|45679608|gb|BV140085.1| PZA00532 Zea mays ssp. parviglumis Benz 967 Zea mays Benz 967 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 347 Score = 587 bits (296), Expect = e-166 Identities = 342/356 (96%), Gaps = 11/356 (3%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ccagacccaccgtgcgtccgtgccatgtccatcgagccgtgcttccatcaagctcccttc 288 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 228 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 168 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 167 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattg------t 114 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 113 tattcttattcttaatctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 54 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 53 tgtatttgatccaagtgtagatagttgatagacagatcc---aatctgttcatcct 1 >gi|45679598|gb|BV140075.1| PZA00532 Zea mays ssp. parviglumis JSGyMAS 401 Zea mays JSGyMAS 401 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 347 Score = 587 bits (296), Expect = e-166 Identities = 342/356 (96%), Gaps = 11/356 (3%) Strand = Plus / Minus Query: 57 ccagacccaccgtgcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttc 116 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ccagacccaccgtgcgtccgtgccatgtccatcgagccgtgcttccatcaagctcccttc 288 Query: 117 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 tacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcac 228 Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 168 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattgttatgct 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 167 aatctggtcaggactcacggcagacttgcttgctaactagggcagaactattg------t 114 Query: 297 tattcttattcttcttctgcgaa--acaaaggaaccatacaaaatgtattctttccctcc 354 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 113 tattcttattcttaatctgcgaaacacaaaggaaccatacaaaatgtattctttccctcc 54 Query: 355 tgtatttgatccaagtgtagatagttgatagacagatccattaatctgttcatcct 410 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 53 tgtatttgatccaagtgtagatagttgatagacagatcc---aatctgttcatcct 1 >gi|45679610|gb|BV140087.1| PZA00532 Zea mays ssp. parviglumis Beadle & Kato site 4 Zea mays Beadle & Kato site 4 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 274 Score = 472 bits (238), Expect = e-131 Identities = 270/280 (96%), Gaps = 8/280 (2%) Strand = Plus / Minus Query: 75 cgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcgagg 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 cgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcgagg 215 Query: 135 aaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgg 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 aaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgg 155 Query: 195 gggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggactcac 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 gggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggactcac 95 Query: 255 ggcagacttgcttgctaactagggcagaactattgttatgcttattcttattcttcttct 314 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 94 ggcagacttgcttgctaactagggcagaactattg------ttattcttattcttaatct 41 Query: 315 gcgaa--acaaaggaaccatacaaaatgtattctttccct 352 ||||| ||||||||||||||||||||||||||||||||| Sbjct: 40 gcgaaacacaaaggaaccatacaaaatgtattctttccct 1 >gi|45679606|gb|BV140083.1| PZA00532 Zea mays ssp. parviglumis USDA PI566686 Zea mays USDA PI566686 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 244 Score = 412 bits (208), Expect = e-113 Identities = 240/250 (96%), Gaps = 8/250 (3%) Strand = Plus / Minus Query: 97 gcttccatcaagctcccttctacgactgcaaggcgaggaaggacaccgatttgggcaagg 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 gcttccatcaagctcccttctacgactgcaaggcgaggaaggacaccgatttgggcaagg 185 Query: 157 tagtgccttacgtgaggcactgcgaggacgtgagctgggggctcaagattgtagatcaaa 216 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 184 tagtgccttacgtgaggcactgtgaggacgtgagctgggggctcaagattgtagatcaaa 125 Query: 217 ctcatttgtagtgtagctgtaatctggtcaggactcacggcagacttgcttgctaactag 276 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 124 ctcatttgtagtgtagctgtaatctggtcaggactcacggcagacttgcttcctaactag 65 Query: 277 ggcagaactattgttatgcttattcttattcttcttctgcgaa--acaaaggaaccatac 334 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 64 ggcagaactattg------ttattcttattcttcttctgcgaaacacaaaggaaccatac 11 Query: 335 aaaatgtatt 344 |||||||||| Sbjct: 10 aaaatgtatt 1 >gi|22489384|gb|BU049307.1|BU049307 1111005C06.y3 1111 - Unigene III from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 102 Score = 186 bits (94), Expect = 2e-45 Identities = 100/102 (98%) Strand = Plus / Minus Query: 177 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgt 236 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 102 tgcgaggacgtgagctgggggctcaagattgtagatcaaactcctttgtagtgtagctgt 43 Query: 237 aatctggtcaggactcacggcagacttgcttgctaactaggg 278 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 42 aatctggtcaggactcccggcagacttgcttgctaactaggg 1 >gi|32824553|gb|CD964275.1|CD964275 SEB_14 GeneTag2 Zea mays cDNA, mRNA sequence Length = 104 Score = 56.0 bits (28), Expect = 4e-06 Identities = 28/28 (100%) Strand = Plus / Plus Query: 9 gccggcctgaagccgtggatcatgctta 36 |||||||||||||||||||||||||||| Sbjct: 77 gccggcctgaagccgtggatcatgctta 104 >gi|32791196|gb|CD943432.1|CD943432 RCQ_41 GeneTag1 Zea mays cDNA, mRNA sequence Length = 104 Score = 48.1 bits (24), Expect = 0.001 Identities = 27/28 (96%) Strand = Plus / Plus Query: 9 gccggcctgaagccgtggatcatgctta 36 ||||||||||||||||||||||| |||| Sbjct: 77 gccggcctgaagccgtggatcatactta 104 >gi|88900594|gb|AC183306.1| Zea mays chromosome UNK clone ZMMBBb-629A16; ZMMBBb0629A16, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces Length = 153652 Score = 40.1 bits (20), Expect = 0.24 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccatcgagccgtgcttccat 104 |||||||||||||||||||| Sbjct: 99316 ccatcgagccgtgcttccat 99297 >gi|55975245|gb|AC152916.1| Zea mays chromosome 2 clone Z377J20 map 2S, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces Length = 204214 Score = 40.1 bits (20), Expect = 0.24 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccatcgagccgtgcttccat 104 |||||||||||||||||||| Sbjct: 2212 ccatcgagccgtgcttccat 2193 >gi|51315580|gb|AC146975.4| Zea mays clone ZMMBBb0357I20, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces Length = 139209 Score = 40.1 bits (20), Expect = 0.24 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccatcgagccgtgcttccat 104 |||||||||||||||||||| Sbjct: 123730 ccatcgagccgtgcttccat 123711 >gi|90265907|gb|AC183914.1| Zea mays chromosome UNK clone CH201-251O11; ZMMBBc0251O11, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces Length = 143748 Score = 38.2 bits (19), Expect = 0.95 Identities = 22/23 (95%) Strand = Plus / Minus Query: 82 tgtccatcgagccgtgcttccat 104 ||||||| ||||||||||||||| Sbjct: 56243 tgtccatggagccgtgcttccat 56221 Score = 38.2 bits (19), Expect = 0.95 Identities = 28/31 (90%) Strand = Plus / Minus Query: 166 acgtgaggcactgcgaggacgtgagctgggg 196 |||| ||| |||||||||| ||||||||||| Sbjct: 56159 acgtcaggaactgcgaggatgtgagctgggg 56129 >gi|7135696|gb|AW498219.1|AW498219 660044B05.x2 660 - Mixed stages of anther and pollen Zea mays cDNA, mRNA sequence Length = 290 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 430 aaacatgtttactatgtg 447 |||||||||||||||||| Sbjct: 32 aaacatgtttactatgtg 49 >gi|18661366|gb|BM501375.1|BM501375 PAC000000000670 Pioneer AF-1 array Zea mays cDNA, mRNA sequence Length = 445 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 313 ctgcgaaacaaaggaacc 330 |||||||||||||||||| Sbjct: 150 ctgcgaaacaaaggaacc 133 >gi|18963606|gb|BM660529.1|BM660529 952039C08.y1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 489 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 313 ctgcgaaacaaaggaacc 330 |||||||||||||||||| Sbjct: 444 ctgcgaaacaaaggaacc 461 >gi|20301550|gb|BQ164493.1|BQ164493 1091020H12.y3 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence Length = 555 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 430 aaacatgtttactatgtg 447 |||||||||||||||||| Sbjct: 529 aaacatgtttactatgtg 512 >gi|26456488|gb|CA828071.1|CA828071 1114023D02.y2 1114 - Unigene IV from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 598 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 430 aaacatgtttactatgtg 447 |||||||||||||||||| Sbjct: 537 aaacatgtttactatgtg 520 >gi|37377856|gb|CF625571.1|CF625571 zmrws05_0A21-002-d10.s3 zmrws05 Zea mays cDNA 3', mRNA sequence Length = 654 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 313 ctgcgaaacaaaggaacc 330 |||||||||||||||||| Sbjct: 534 ctgcgaaacaaaggaacc 551 >gi|40303029|gb|CK347416.1|CK347416 zmrsub1_0A20-004-d03.s4 zmrsub1 Zea mays cDNA 3', mRNA sequence Length = 762 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 430 aaacatgtttactatgtg 447 |||||||||||||||||| Sbjct: 9 aaacatgtttactatgtg 26 >gi|67015405|gb|CO444154.1|CO444154 MZCCL10068G04.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 761 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 76 gcgccatgtccatcgagc 93 |||||||||||||||||| Sbjct: 512 gcgccatgtccatcgagc 529 >gi|74234141|gb|DT642055.1|DT642055 ZM_BFb0100G15.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 843 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 76 gcgccatgtccatcgagc 93 |||||||||||||||||| Sbjct: 251 gcgccatgtccatcgagc 234 >gi|76013701|gb|DT940871.1|DT940871 ZM_BFb0123O05.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 808 Score = 36.2 bits (18), Expect = 3.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 82 tgtccatcgagccgtgcttcca 103 ||||||| |||||||||||||| Sbjct: 211 tgtccatggagccgtgcttcca 190 >gi|87153267|gb|DY398056.1|DY398056 III-952-6A-G04.M13-R UGIII-Reseq Zea mays cDNA, mRNA sequence Length = 656 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 313 ctgcgaaacaaaggaacc 330 |||||||||||||||||| Sbjct: 433 ctgcgaaacaaaggaacc 450 >gi|88749193|gb|DY533334.1|DY533334 ZM_BFb0263O15.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 813 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 76 gcgccatgtccatcgagc 93 |||||||||||||||||| Sbjct: 251 gcgccatgtccatcgagc 234 >gi|92110170|gb|AC185307.1| Zea mays chromosome UNK clone CH201-326O7; ZMMBBc0326O07, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces Length = 155089 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 430 aaacatgtttactatgtg 447 |||||||||||||||||| Sbjct: 60515 aaacatgtttactatgtg 60498 >gi|89572704|gb|AC183758.1| Zea mays chromosome UNK clone CH201-168J23; ZMMBBc0168J23, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces Length = 178182 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 64 caccgtgcgtccgcgcca 81 |||||||||||||||||| Sbjct: 851 caccgtgcgtccgcgcca 834 >gi|89179595|gb|AC183437.1| Zea mays chromosome UNK clone CH201-321I24; ZMMBBc0321I24, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces Length = 215567 Score = 36.2 bits (18), Expect = 3.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 116 ctacgactgcaaggcgaggaag 137 |||||||||||||| ||||||| Sbjct: 128132 ctacgactgcaaggtgaggaag 128153 >gi|89257797|gb|AC177927.2| Zea mays chromosome UNK clone CH201-122M21; ZMMBBc0122M21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces Length = 198537 Score = 36.2 bits (18), Expect = 3.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 209 agatcaaactcatttgta 226 |||||||||||||||||| Sbjct: 11179 agatcaaactcatttgta 11162 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 156,345 Number of Sequences: 836351 Number of extensions: 156345 Number of successful extensions: 12100 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11967 Number of HSP's gapped (non-prelim): 106 length of query: 466 length of database: 669,372,029 effective HSP length: 19 effective length of query: 447 effective length of database: 653,481,360 effective search space: 292106167920 effective search space used: 292106167920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)