BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 3748389.2.1 (663 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|6859887|gb|AW355881.1|AW355881 707015C08.x1 707 - Mixed adult... 1296 0.0 gi|78179020|gb|DV549393.1|DV549393 1000054-G07.GAD10-F UGI-Reseq... 1296 0.0 gi|12045771|gb|BF727910.1|BF727910 1000054G07.x3 1000 - Unigene ... 924 0.0 gi|16378392|gb|BI992423.1|BI992423 1020061H02.x2 1020 - Unigene ... 387 e-105 gi|71443906|gb|DR824956.1|DR824956 ZM_BFb0067A13.f ZM_BFb Zea ma... 46 0.006 gi|71430955|gb|DR812005.1|DR812005 ZM_BFb0040I03.r ZM_BFb Zea ma... 42 0.088 gi|78086644|gb|DV515037.1|DV515037 ZM_BFb0197H04.r ZM_BFb Zea ma... 42 0.088 gi|78090014|gb|DV518388.1|DV518388 ZM_BFb0202F23.r ZM_BFb Zea ma... 42 0.088 gi|78080927|gb|DV509339.1|DV509339 ZM_BFb0188G04.f ZM_BFb Zea ma... 38 1.4 gi|5525837|gb|AI861730.1|AI861730 614017E03.x1 614 - root cDNA l... 36 5.4 gi|28187628|gb|CB179238.1|CB179238 EST0324 Zea mays sperm cell c... 36 5.4 gi|32840594|gb|CD980275.1|CD980275 QAH5c06.xg QAH Zea mays cDNA ... 36 5.4 gi|71762756|gb|DR960693.1|DR960693 ZM_BFb0075L18.f ZM_BFb Zea ma... 36 5.4 gi|89759721|gb|DY688449.1|DY688449 ZM_BFb0282K14.f ZM_BFb Zea ma... 36 5.4 gi|89257726|gb|AC177853.2| Zea mays chromosome UNK clone CH201-3... 36 5.4 >gi|6859887|gb|AW355881.1|AW355881 707015C08.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence Length = 663 Score = 1296 bits (654), Expect = 0.0 Identities = 654/654 (100%) Strand = Plus / Plus Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60 Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccag 120 Query: 121 ccgacgccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgtgtca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgacgccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgtgtca 180 Query: 181 atggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcatgaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcatgaat 240 Query: 241 ctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcgcggg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcgcggg 300 Query: 301 gcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggcttctta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggcttctta 360 Query: 361 tggataagaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcgccca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tggataagaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcgccca 420 Query: 421 aagacatcgcggatgctctgaggacggccatggcggagaaccaagacgggactagggtca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aagacatcgcggatgctctgaggacggccatggcggagaaccaagacgggactagggtca 480 Query: 481 aggaactggccgaggtgtttggaaatgacgaggccaatgatcagtgcctgcgagatttcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aggaactggccgaggtgtttggaaatgacgaggccaatgatcagtgcctgcgagatttcc 540 Query: 541 tccggtatctgtcagaatacatcaggcagcatcaaggttagttccagtccatttcgaggc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tccggtatctgtcagaatacatcaggcagcatcaaggttagttccagtccatttcgaggc 600 Query: 601 taatgttaatgcagaaaagggcaaagaaatggtagtgagtcacgtcacgctatc 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 taatgttaatgcagaaaagggcaaagaaatggtagtgagtcacgtcacgctatc 654 >gi|78179020|gb|DV549393.1|DV549393 1000054-G07.GAD10-F UGI-Reseq Zea mays cDNA, mRNA sequence Length = 678 Score = 1296 bits (654), Expect = 0.0 Identities = 654/654 (100%) Strand = Plus / Plus Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 66 Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccag 126 Query: 121 ccgacgccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgtgtca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 ccgacgccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgtgtca 186 Query: 181 atggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcatgaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 atggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcatgaat 246 Query: 241 ctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcgcggg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 ctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcgcggg 306 Query: 301 gcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggcttctta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggcttctta 366 Query: 361 tggataagaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcgccca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 tggataagaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcgccca 426 Query: 421 aagacatcgcggatgctctgaggacggccatggcggagaaccaagacgggactagggtca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 aagacatcgcggatgctctgaggacggccatggcggagaaccaagacgggactagggtca 486 Query: 481 aggaactggccgaggtgtttggaaatgacgaggccaatgatcagtgcctgcgagatttcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 aggaactggccgaggtgtttggaaatgacgaggccaatgatcagtgcctgcgagatttcc 546 Query: 541 tccggtatctgtcagaatacatcaggcagcatcaaggttagttccagtccatttcgaggc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 tccggtatctgtcagaatacatcaggcagcatcaaggttagttccagtccatttcgaggc 606 Query: 601 taatgttaatgcagaaaagggcaaagaaatggtagtgagtcacgtcacgctatc 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 taatgttaatgcagaaaagggcaaagaaatggtagtgagtcacgtcacgctatc 660 >gi|12045771|gb|BF727910.1|BF727910 1000054G07.x3 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 466 Score = 924 bits (466), Expect = 0.0 Identities = 466/466 (100%) Strand = Plus / Plus Query: 23 cggcagcgaggcgaagctgacgagcgcgcagctccaaacaattgcgctaggtttggaggc 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cggcagcgaggcgaagctgacgagcgcgcagctccaaacaattgcgctaggtttggaggc 60 Query: 83 ttccggcctgccgttcctctgggcattcaggccgccagccgacgccgcacccggacaagg 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttccggcctgccgttcctctgggcattcaggccgccagccgacgccgcacccggacaagg 120 Query: 143 cacgggcgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccg 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cacgggcgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccg 180 Query: 203 cggctgggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgaccca 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cggctgggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgaccca 240 Query: 263 cgccggctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgcc 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cgccggctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgcc 300 Query: 323 gctgatgttcgatcagggcctcaacgccaggcttcttatggataagaagatcgggattga 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gctgatgttcgatcagggcctcaacgccaggcttcttatggataagaagatcgggattga 360 Query: 383 ggtggagaggaacgaagacgacggcacgttcgcgcccaaagacatcgcggatgctctgag 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ggtggagaggaacgaagacgacggcacgttcgcgcccaaagacatcgcggatgctctgag 420 Query: 443 gacggccatggcggagaaccaagacgggactagggtcaaggaactg 488 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gacggccatggcggagaaccaagacgggactagggtcaaggaactg 466 >gi|16378392|gb|BI992423.1|BI992423 1020061H02.x2 1020 - Unigene II from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 239 Score = 387 bits (195), Expect = e-105 Identities = 231/239 (96%), Gaps = 3/239 (1%) Strand = Plus / Minus Query: 405 ggcacgttcgcgcccaaagacatc-gcggatgctctgaggacggccatggcggagaacca 463 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 239 ggcacgttcgcgcccaaagacatccgcagatgctctgaggacggccatggcggagaacca 180 Query: 464 agacgggactagggtcaaggaactggccgaggtgtttggaaatgacgaggccaatgatca 523 |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 179 agacggaactagggtcaaggaactggcctaggtgtttggaaatggcgaggccaatgatca 120 Query: 524 gtgcctgcgagatttcctccggtatctgtcagaatacatcaggcagcatcaaggttagtt 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 gtgcctgcgagatttcctccggtatctgtcagaatacatcaggcagcatcaaggttagtt 60 Query: 584 ccagtccatttc-gaggctaatgttaatgcagaaaagggcaaag-aaatggtagtgagt 640 |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 59 ccagtccatttcagaggctaatgttaatgcagaaaagggcaaagtaaatggcagtgagt 1 >gi|71443906|gb|DR824956.1|DR824956 ZM_BFb0067A13.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 628 Score = 46.1 bits (23), Expect = 0.006 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 tccgtcgtgtacgcggccttcggcagc 29 ||||||||||||| ||||||||||||| Sbjct: 628 tccgtcgtgtacgtggccttcggcagc 602 >gi|71430955|gb|DR812005.1|DR812005 ZM_BFb0040I03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 880 Score = 42.1 bits (21), Expect = 0.088 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 tccggcctgccgttcctctgg 104 ||||||||||||||||||||| Sbjct: 466 tccggcctgccgttcctctgg 446 >gi|78086644|gb|DV515037.1|DV515037 ZM_BFb0197H04.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 875 Score = 42.1 bits (21), Expect = 0.088 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 tccggcctgccgttcctctgg 104 ||||||||||||||||||||| Sbjct: 416 tccggcctgccgttcctctgg 396 >gi|78090014|gb|DV518388.1|DV518388 ZM_BFb0202F23.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 826 Score = 42.1 bits (21), Expect = 0.088 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 tccggcctgccgttcctctgg 104 ||||||||||||||||||||| Sbjct: 478 tccggcctgccgttcctctgg 458 >gi|78080927|gb|DV509339.1|DV509339 ZM_BFb0188G04.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 644 Score = 38.2 bits (19), Expect = 1.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 243 gttggtgggtttctgacccacgccggctggaactc 277 |||||||| || ||||||||| |||||||||||| Sbjct: 487 gttggtggtttcgtgacccacggcggctggaactc 453 >gi|5525837|gb|AI861730.1|AI861730 614017E03.x1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence Length = 473 Score = 36.2 bits (18), Expect = 5.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 498 tttggaaatgacgaggcc 515 |||||||||||||||||| Sbjct: 312 tttggaaatgacgaggcc 329 >gi|28187628|gb|CB179238.1|CB179238 EST0324 Zea mays sperm cell cDNA library Zea mays cDNA clone Zmsp1213 5' similar to tonoplast membrane integral protein ZmTIP5-1, mRNA sequence Length = 378 Score = 36.2 bits (18), Expect = 5.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 438 ctgaggacggccatggcggaga 459 |||| ||||||||||||||||| Sbjct: 82 ctgacgacggccatggcggaga 61 >gi|32840594|gb|CD980275.1|CD980275 QAH5c06.xg QAH Zea mays cDNA clone QAH5c06, mRNA sequence Length = 339 Score = 36.2 bits (18), Expect = 5.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 367 agaagatcgggattgagg 384 |||||||||||||||||| Sbjct: 218 agaagatcgggattgagg 235 >gi|71762756|gb|DR960693.1|DR960693 ZM_BFb0075L18.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 713 Score = 36.2 bits (18), Expect = 5.4 Identities = 27/30 (90%) Strand = Plus / Minus Query: 76 tggaggcttccggcctgccgttcctctggg 105 ||||||| || |||| |||||||||||||| Sbjct: 651 tggaggcgtctggccggccgttcctctggg 622 >gi|89759721|gb|DY688449.1|DY688449 ZM_BFb0282K14.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 729 Score = 36.2 bits (18), Expect = 5.4 Identities = 27/30 (90%) Strand = Plus / Minus Query: 76 tggaggcttccggcctgccgttcctctggg 105 ||||||| || |||| |||||||||||||| Sbjct: 583 tggaggcgtctggccggccgttcctctggg 554 >gi|89257726|gb|AC177853.2| Zea mays chromosome UNK clone CH201-304G17; ZMMBBc0304G17, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces Length = 155903 Score = 36.2 bits (18), Expect = 5.4 Identities = 27/30 (90%) Strand = Plus / Minus Query: 76 tggaggcttccggcctgccgttcctctggg 105 ||||||| || |||| |||||||||||||| Sbjct: 124003 tggaggcgtctggccggccgttcctctggg 123974 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 234,151 Number of Sequences: 836351 Number of extensions: 234151 Number of successful extensions: 16961 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16942 Number of HSP's gapped (non-prelim): 17 length of query: 663 length of database: 669,372,029 effective HSP length: 19 effective length of query: 644 effective length of database: 653,481,360 effective search space: 420841995840 effective search space used: 420841995840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)