TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB307722.1|CB307722 HFIG707 Hessian fly infested cDNA li... 158 1e-054
gb|CK206694.1|CK206694 FGAS018298 Triticum aestivum FGAS: L... 136 1e-046
gb|CA735682.1|CA735682 wpi1s.pk005.a23 wpi1s Triticum aesti... 148 9e-037
gb|BQ241700.1|BQ241700 TaE05001H09R TaE05 Triticum aestivum... 88 2e-026
gb|BJ304916.1|BJ304916 BJ304916 Y. Ogihara unpublished cDNA... 88 2e-026
gb|BG907022.1|BG907022 TaLr1156E09R TaLr1 Triticum aestivum... 88 2e-026
gb|BG907523.1|BG907523 TaLr1160F10R TaLr1 Triticum aestivum... 88 2e-026
gb|BJ249132.1|BJ249132 BJ249132 Y. Ogihara unpublished cDNA... 117 9e-026
gb|BF292952.1|BF292952 WHE2166_G07_N14ZS Triticum turgidum ... 85 1e-025
gb|CA501261.1|CA501261 WHE4031_D07_H13ZT Wheat meiotic anth... 84 3e-025
gb|CA733774.1|CA733774 wlp1c.pk006.j21 wlp1c Triticum aesti... 86 5e-025
gb|CA725677.1|CA725677 wet1s.pk001.c2 wet1s Triticum aestiv... 75 2e-024
gb|CV767919.1|CV767919 FGAS062310 Triticum aestivum FGAS: L... 81 2e-024
gb|AY376128.1| Triticum aestivum ETTIN-like auxin response ... 91 6e-024
gb|BG263404.1|BG263404 WHE2341_F02_K03ZS Wheat pre-anthesis... 103 2e-021
>gb|CB307722.1|CB307722 HFIG707 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 724
Score = 158 bits (340), Expect(2) = 1e-054
Identities = 65/113 (57%), Positives = 79/113 (69%)
Frame = -1 / +1
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLDP RW NSHWR+++VGWDESTA ER+
Sbjct: 205 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQ 384
Query: 287 TRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLAD 129
RVS+WEIEP+ T P R K P G+P E ++ WL D
Sbjct: 385 PRVSLWEIEPLTTYPMYSSPFPMRLKRPWPTGLPSLYGGKEDDLTSSLMWLRD 543
Score = 87.7 bits (185), Expect(2) = 2e-024
Identities = 53/113 (46%), Positives = 62/113 (54%)
Frame = +1 / -3
Query: 130 SASHGIALLKALSTSFSSSGIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVD 309
S SH +K+ S G P G F G V GSIS +T LS AVD
Sbjct: 542 SRSHMREEVKSSSFPPYKEGNPVGQGRFSRIGKGDEYIG*VVRGSISQRDTLGCLSPAVD 363
Query: 310 SSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVY 468
SS PT RQ EF R+GS+S +PVIVPMY LT +SSVSKSI R+P D V+
Sbjct: 362 SSHPTLTERQCEFGQRAGSRSLIPVIVPMYRLTLDSSVSKSIRKRMPTDIRVW 204
Score = 75.3 bits (158), Expect(2) = 1e-054
Identities = 32/54 (59%), Positives = 37/54 (68%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAA+ + FTIFYNPRA PSEFVIPLAKY KA+Y
Sbjct: 43 MPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVY 204
Score = 45.5 bits (93), Expect(2) = 2e-024
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1 / -3
Query: 466 YRALLYFAKGMTNSDGXALGL*KIVNGL 549
Y A Y A GMTNS+G ALGL*KIVN L
Sbjct: 203 YTAFTYLANGMTNSEGLALGL*KIVNRL 120
>gb|CK206694.1|CK206694 FGAS018298 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1034
Score = 136 bits (291), Expect(2) = 1e-046
Identities = 50/73 (68%), Positives = 64/73 (87%)
Frame = -1 / +3
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTIT + D DP+RW +S+WR+++VGWDESTA ER
Sbjct: 372 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVKVGWDESTAGERP 551
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 552 PRVSLWEIEPLTT 590
Score = 88.1 bits (186), Expect(2) = 1e-024
Identities = 47/79 (59%), Positives = 52/79 (65%)
Frame = +1 / -2
Query: 250 VATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSK 429
V GSISH ET LS AVDSSQPT Q*E R+GS S VIVPMYL T +SSVSK
Sbjct: 589 VVNGSISHKETLGGLSPAVDSSQPTLTDLQ*ELAQRTGSASLTSVIVPMYLRTLDSSVSK 410
Query: 430 SILNRIPRDTCVYRALLYF 486
SILNR+P D V + L +
Sbjct: 409 SILNRMPTDIRV*KTALMY 353
Score = 71.2 bits (149), Expect(2) = 1e-046
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAA+ + FTIFYNPRA PSEFVIPL+KY KA++
Sbjct: 210 MPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVF 371
Score = 45.5 bits (93), Expect(2) = 1e-024
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +1 / -2
Query: 472 ALLYFAKGMTNSDGXALGL*KIVNGL 549
AL+YF GMTNSDG ALGL*KIV L
Sbjct: 364 ALMYFESGMTNSDGHALGL*KIVKRL 287
>gb|CA735682.1|CA735682 wpi1s.pk005.a23 wpi1s Triticum aestivum cDNA clone wpi1s.pk005.a23
5' end, mRNA sequence
Length = 492
Score = 148 bits (317), Expect(2) = 9e-037
Identities = 62/108 (57%), Positives = 73/108 (67%)
Frame = -1 / -1
Query: 452 LGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSI 273
+GMRFRMLFETE+S VRRYMGTITGI LDP RW NSHWR+++VGWDESTA ER+ RVS+
Sbjct: 453 VGMRFRMLFETEESSVRRYMGTITGISALDPARWPNSHWRSVKVGWDESTAGERQPRVSL 274
Query: 272 WEIEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLAD 129
WEIEP+ T P R K P G+P E ++ WL D
Sbjct: 273 WEIEPLTTYPMYSSPFPMRLKRPWPTGLPSLYGGKEDDLTSSLMWLRD 130
Score = 26.3 bits (51), Expect(2) = 9e-037
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3 / -2
Query: 33 CFPCCTCPGGR 1
C CTCPGGR
Sbjct: 38 CXLTCTCPGGR 6
>gb|BQ241700.1|BQ241700 TaE05001H09R TaE05 Triticum aestivum cDNA clone TaE05001H09R, mRNA
sequence
Length = 737
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 127 SSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 306
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LD L
Sbjct: 307 FRMRFEGEEAPEQRFTGTIVGSENLDQL 390
Score = 51.9 bits (107), Expect(2) = 2e-026
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 391 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 498
>gb|BJ304916.1|BJ304916 BJ304916 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd8p17 5', mRNA sequence
Length = 662
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = -1 / +2
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 284 SSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 463
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LD L
Sbjct: 464 FRMRFEGEEAPEQRFTGTIVGSENLDQL 547
Score = 51.9 bits (107), Expect(2) = 2e-026
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +2
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 548 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 655
>gb|BG907022.1|BG907022 TaLr1156E09R TaLr1 Triticum aestivum cDNA clone TaLr1156E09 5',
mRNA sequence
Length = 649
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 160 SSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 339
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LD L
Sbjct: 340 FRMRFEGEEAPEQRFTGTIVGSENLDQL 423
Score = 51.9 bits (107), Expect(2) = 2e-026
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 424 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 531
>gb|BG907523.1|BG907523 TaLr1160F10R TaLr1 Triticum aestivum cDNA clone TaLr1160F10 5',
mRNA sequence
Length = 630
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 160 SSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 339
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LD L
Sbjct: 340 FRMRFEGEEAPEQRFTGTIVGSENLDQL 423
Score = 51.9 bits (107), Expect(2) = 2e-026
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 424 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 531
>gb|BJ249132.1|BJ249132 BJ249132 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23i15 5', mRNA sequence
Length = 367
Score = 117 bits (251), Expect = 9e-026
Identities = 49/93 (52%), Positives = 60/93 (64%)
Frame = -1 / +3
Query: 407 VRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPP 228
VRRYMGTITGI DLD +RW NSHWR+++VGWDESTA ER+ RVS+WEIEP+ T P
Sbjct: 21 VRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPTP 200
Query: 227 PFFRPKLPKQAGMPDDENEVESAFKRAMPWLAD 129
R K P G+P + ++ WL D
Sbjct: 201 FPLRLKRPWPTGLPSLHGGKDDDLTSSLMWLRD 299
>gb|BF292952.1|BF292952 WHE2166_G07_N14ZS Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2166_G07_N14, mRNA sequence
Length = 582
Score = 84.9 bits (179), Expect(2) = 1e-025
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = -1 / +1
Query: 608 SXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRML 429
S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMRFRM
Sbjct: 1 SSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMR 180
Query: 428 FETEDSGVRRYMGTITGIGDLDPL 357
FE E++ +R+ GTI G +LD L
Sbjct: 181 FEGEEAPEQRFTGTIVGSENLDQL 252
Score = 51.9 bits (107), Expect(2) = 1e-025
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 253 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 360
>gb|CA501261.1|CA501261 WHE4031_D07_H13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4031_D07_H13, mRNA sequence
Length = 669
Score = 83.5 bits (176), Expect(2) = 3e-025
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = -1 / +2
Query: 596 MXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETE 417
M + A HA FT++Y PR PSEF+IP +Y +++ S+GMRFRM FE E
Sbjct: 8 MHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGE 187
Query: 416 DSGVRRYMGTITGIGDLDPL 357
++ +R+ GTI G +LD L
Sbjct: 188 EAPEQRFTGTIVGSENLDQL 247
Score = 51.9 bits (107), Expect(2) = 3e-025
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +2
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 248 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 355
>gb|CA733774.1|CA733774 wlp1c.pk006.j21 wlp1c Triticum aestivum cDNA clone wlp1c.pk006.j21
5' end, mRNA sequence
Length = 612
Score = 86.3 bits (182), Expect(2) = 5e-025
Identities = 36/88 (40%), Positives = 51/88 (57%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 129 SSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 308
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
F+M FE E++ +R+ GTI G +LD L
Sbjct: 309 FKMRFEGEEAPEQRFTGTIVGSENLDQL 392
Score = 48.7 bits (100), Expect(2) = 5e-025
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1 / +3
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L WDE + R RVS W+IEP ++P
Sbjct: 393 WPESNWRSLXXRWDEPSTIPRPDRVSPWKIEPASSP 500
>gb|CA725677.1|CA725677 wet1s.pk001.c2 wet1s Triticum aestivum cDNA clone wet1s.pk001.c2 5'
end, mRNA sequence
Length = 422
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = -1 / -3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAAA + FTIFYNPRA PSEF+IPLAKY K++Y
Sbjct: 258 MPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVY 97
Score = 58.3 bits (121), Expect(2) = 2e-024
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -1 / -3
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITG 378
+T+VS+GMRFRMLFETE+S VRRYMGT G
Sbjct: 96 HTRVSVGMRFRMLFETEESSVRRYMGTCPG 7
>gb|CV767919.1|CV767919 FGAS062310 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 833
Score = 80.8 bits (170), Expect(2) = 2e-024
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = -1 / +2
Query: 566 HAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGT 387
HA FT++Y PR PSEF+IP +Y +++ S+GMRFRM FE E++ +R+ GT
Sbjct: 116 HAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGT 295
Query: 386 ITGIGDLDPL 357
I G +LD L
Sbjct: 296 IVGSENLDQL 325
Score = 51.9 bits (107), Expect(2) = 2e-024
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +2
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATP 246
W S+WR+L+V WDE + R RVS W+IEP ++P
Sbjct: 326 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSP 433
>gb|AY376128.1| Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha)
mRNA, partial cds
Length = 2256
Score = 90.9 bits (192), Expect(2) = 6e-024
Identities = 36/74 (48%), Positives = 46/74 (62%)
Frame = -1 / +2
Query: 578 AAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRR 399
A HA A F IFYNPR SEF++P K+ K+ S+G RF+M +E+ED+ RR
Sbjct: 638 ANVAHAVATKSMFQIFYNPRLSQSEFIVPYWKFTKSFSQPFSVGSRFKMRYESEDAAERR 817
Query: 398 YMGTITGIGDLDPL 357
Y G ITG GD DP+
Sbjct: 818 YTGIITGTGDADPM 859
Score = 40.5 bits (82), Expect(2) = 6e-024
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1 / +2
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
W+ S W+ L V WD+ R RVS WEIE
Sbjct: 860 WRGSKWKCLLVRWDDDGEFRRPNRVSPWEIE 952
>gb|BG263404.1|BG263404 WHE2341_F02_K03ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_F02_K03, mRNA sequence
Length = 395
Score = 103 bits (219), Expect = 2e-021
Identities = 43/87 (49%), Positives = 54/87 (62%)
Frame = -1 / +2
Query: 389 TITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPK 210
TITGI DLD +RW NSHWR+++VGWDESTA ER+ RVS+WEIEP+ T P R K
Sbjct: 2 TITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPTPFPLRLK 181
Query: 209 LPKQAGMPDDENEVESAFKRAMPWLAD 129
P G+P + ++ WL D
Sbjct: 182 RPWPTGLPSLHGGKDDDLTSSLMWLRD 262
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 615,014,560
Number of Sequences: 636343
Number of extensions: 9745384
Number of successful extensions: 141978
Number of sequences better than 1.0e-020: 21
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 13746521270
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)