TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL35a05.yg.2.1
(567 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA666392.1|CA666392 wlk1.pk0025.b7 wlk1 Triticum aestivu... 121 6e-027
>gb|CA666392.1|CA666392 wlk1.pk0025.b7 wlk1 Triticum aestivum cDNA clone wlk1.pk0025.b7 5'
end, mRNA sequence
Length = 466
Score = 121 bits (259), Expect = 6e-027
Identities = 47/92 (51%), Positives = 63/92 (68%)
Frame = -3 / +1
Query: 346 ALSKFTTLLNTSYIDDPVIVFGEDTKARMATEAVFTIATAYGDHIRSGWRNIIDCILXXH 167
+L KFTTLLNTS +++PV FG+D KAR+ATE +FTIA YG +IR+GWRN++DCIL H
Sbjct: 43 SLCKFTTLLNTSLVEEPVTAFGDDLKARLATETLFTIANKYGHYIRTGWRNVLDCILRLH 222
Query: 166 KIGLLPGRLXXXXXXXXXXXXXSLPGKHTSSA 71
K+GLLP R+ ++ GK S+
Sbjct: 223 KLGLLPARVASDAADDSEVSAETVQGKPVPSS 318
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 382,140,684
Number of Sequences: 636343
Number of extensions: 4188187
Number of successful extensions: 44190
Number of sequences better than 1.0e-020: 2
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12148006472
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)