TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE586012.1|BE586012 Est#7psp6_B08_b8_061 KSU wheat Fusar... 101 5e-021
gb|BE586180.1|BE586180 Est7-4-5_B07_7B5sp6_057 KSU wheat Fu... 101 5e-021
gb|BJ306330.1|BJ306330 BJ306330 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BQ238698.1|BQ238698 TaE05033H01F TaE05 Triticum aestivum... 101 5e-021
gb|BQ247045.1|BQ247045 TaE15002A07R TaE15 Triticum aestivum... 101 5e-021
gb|BJ222681.1|BJ222681 BJ222681 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ227818.1|BJ227818 BJ227818 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ228232.1|BJ228232 BJ228232 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ230612.1|BJ230612 BJ230612 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ300509.1|BJ300509 BJ300509 Y. Ogihara unpublished cDNA... 101 5e-021
gb|CD899781.1|CD899781 G174.113I13F010827 G174 Triticum aes... 101 5e-021
gb|CD899782.1|CD899782 G174.113I13R011120 G174 Triticum aes... 101 5e-021
gb|CD930234.1|CD930234 GR45.110L03F010511 GR45 Triticum aes... 101 5e-021
gb|CK197590.1|CK197590 FGAS006068 Triticum aestivum FGAS: L... 101 5e-021
gb|CK197922.1|CK197922 FGAS006402 Triticum aestivum FGAS: L... 101 5e-021
>gb|BE586012.1|BE586012 Est#7psp6_B08_b8_061 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
Est#7psp6_B08_b8_061, mRNA sequence
Length = 682
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -2
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 387 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 208
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 207 QKAKKSFPKSGP 172
>gb|BE586180.1|BE586180 Est7-4-5_B07_7B5sp6_057 KSU wheat Fusarium graminearum infected
spike cDNA library Triticum aestivum cDNA clone
Est7-4-5_B07_7B5sp6_057, mRNA sequence
Length = 666
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 387 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 208
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 207 QKAKKSFPKSGP 172
>gb|BJ306330.1|BJ306330 BJ306330 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd2l02 3', mRNA sequence
Length = 637
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +2
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 344 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 523
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 524 QKAKKSFPKSGP 559
>gb|BQ238698.1|BQ238698 TaE05033H01F TaE05 Triticum aestivum cDNA clone TaE05033H01F, mRNA
sequence
Length = 553
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +3
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 162 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 341
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 342 QKAKKSFPKSGP 377
>gb|BQ247045.1|BQ247045 TaE15002A07R TaE15 Triticum aestivum cDNA clone TaE15002A07R, mRNA
sequence
Length = 668
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -3
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 537 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 358
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 357 QKAKKSFPKSGP 322
>gb|BJ222681.1|BJ222681 BJ222681 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl15e05 5', mRNA sequence
Length = 558
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 516 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 337
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 336 QKAKKSFPKSGP 301
>gb|BJ227818.1|BJ227818 BJ227818 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl16c17 3', mRNA sequence
Length = 674
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +2
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 341 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 520
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 521 QKAKKSFPKSGP 556
>gb|BJ228232.1|BJ228232 BJ228232 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl5f23 3', mRNA sequence
Length = 714
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 454 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 633
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 634 QKAKKSFPKSGP 669
>gb|BJ230612.1|BJ230612 BJ230612 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl23h08 3', mRNA sequence
Length = 641
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 340 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 519
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 520 QKAKKSFPKSGP 555
>gb|BJ300509.1|BJ300509 BJ300509 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd2l02 5', mRNA sequence
Length = 583
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -2
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 528 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 349
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 348 QKAKKSFPKSGP 313
>gb|CD899781.1|CD899781 G174.113I13F010827 G174 Triticum aestivum cDNA clone G174113I13,
mRNA sequence
Length = 523
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 415 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 236
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 235 QKAKKSFPKSGP 200
>gb|CD899782.1|CD899782 G174.113I13R011120 G174 Triticum aestivum cDNA clone G174113I13,
mRNA sequence
Length = 666
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +3
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 390 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 569
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 570 QKAKKSFPKSGP 605
>gb|CD930234.1|CD930234 GR45.110L03F010511 GR45 Triticum aestivum cDNA clone GR45110L03,
mRNA sequence
Length = 513
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -3
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 442 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 263
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 262 QKAKKSFPKSGP 227
>gb|CK197590.1|CK197590 FGAS006068 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 892
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / +1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 424 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 603
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 604 QKAKKSFPKSGP 639
>gb|CK197922.1|CK197922 FGAS006402 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 838
Score = 101 bits (216), Expect = 5e-021
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +2 / -1
Query: 272 QSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRTT 451
QS+P +SR GPS L KG TRTH+ E ++A+ +D T T VG L CLP PLRNG RW T
Sbjct: 559 QSRPHSSRRGPSVLARKGFTRTHRSEMIEANRMDQTMTIVGVLFCLPRRPLRNG*RWTIT 380
Query: 452 QKEKNSLPSSGP 487
QK K S P SGP
Sbjct: 379 QKAKKSFPKSGP 344
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 474,032,823
Number of Sequences: 636343
Number of extensions: 7233557
Number of successful extensions: 165894
Number of sequences better than 1.0e-020: 22
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 10718829240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)