TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK194020.1|CK194020 FGAS002439 Triticum aestivum FGAS: L... 107 2e-023
gb|CK203901.1|CK203901 FGAS012436 Triticum aestivum FGAS: L... 107 2e-023
gb|CK204227.1|CK204227 FGAS012763 Triticum aestivum FGAS: L... 107 2e-023
gb|BE604359.1|BE604359 WHE1405-1408_G02_G02ZS Wheat drought... 99 5e-021
gb|BJ209432.1|BJ209432 BJ209432 Y. Ogihara unpublished cDNA... 99 5e-021
gb|BQ804745.1|BQ804745 WHE3558_D06_H12ZS Wheat developing g... 99 5e-021
gb|BU672156.1|BU672156 WHE3301_C05_E09ZS Chinese Spring whe... 99 5e-021
gb|CA498544.1|CA498544 WHE3244_G06_N12ZT Wheat meiotic anth... 99 5e-021
gb|CD882666.1|CD882666 F1.110K22F010502 F1 Triticum aestivu... 99 5e-021
gb|CD921760.1|CD921760 G750.001O08F010308 G750 Triticum aes... 99 5e-021
gb|CD938610.1|CD938610 OV.110H18F010312 OV Triticum aestivu... 99 5e-021
gb|CK163206.1|CK163206 FGAS015826 Triticum aestivum FGAS: L... 99 5e-021
gb|CK163680.1|CK163680 FGAS016310 Triticum aestivum FGAS: L... 99 5e-021
>gb|CK194020.1|CK194020 FGAS002439 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 840
Score = 107 bits (228), Expect = 2e-023
Identities = 39/48 (81%), Positives = 45/48 (93%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPL P+NPYG+TKL+ E+ICRDIYRSD EW+IILLRY
Sbjct: 176 GSPKNSPCTEEFPLLPHNPYGRTKLMAEEICRDIYRSDSEWRIILLRY 319
>gb|CK203901.1|CK203901 FGAS012436 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 858
Score = 107 bits (228), Expect = 2e-023
Identities = 39/48 (81%), Positives = 45/48 (93%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPL P+NPYG+TKL+ E+ICRDIYRSD EW+IILLRY
Sbjct: 191 GSPKNSPCTEEFPLLPHNPYGRTKLMAEEICRDIYRSDSEWRIILLRY 334
>gb|CK204227.1|CK204227 FGAS012763 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 812
Score = 107 bits (228), Expect = 2e-023
Identities = 39/48 (81%), Positives = 45/48 (93%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPL P+NPYG+TKL+ E+ICRDIYRSD EW+IILLRY
Sbjct: 192 GSPKNSPCTEEFPLLPHNPYGRTKLMAEEICRDIYRSDSEWRIILLRY 335
>gb|BE604359.1|BE604359 WHE1405-1408_G02_G02ZS Wheat drought stressed leaf cDNA library
Triticum aestivum cDNA clone WHE1405-1408_G02_G02, mRNA
sequence
Length = 559
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 109 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 252
>gb|BJ209432.1|BJ209432 BJ209432 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh14d01 5', mRNA sequence
Length = 525
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 202 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 345
>gb|BQ804745.1|BQ804745 WHE3558_D06_H12ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3558_D06_H12, mRNA sequence
Length = 762
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 479 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 622
>gb|BU672156.1|BU672156 WHE3301_C05_E09ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3301_C05_E09,
mRNA sequence
Length = 621
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 65 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 208
>gb|CA498544.1|CA498544 WHE3244_G06_N12ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3244_G06_N12, mRNA sequence
Length = 694
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 154 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 297
>gb|CD882666.1|CD882666 F1.110K22F010502 F1 Triticum aestivum cDNA clone F1110K22, mRNA
sequence
Length = 503
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 53 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 196
>gb|CD921760.1|CD921760 G750.001O08F010308 G750 Triticum aestivum cDNA clone G750001O08,
mRNA sequence
Length = 655
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 95 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 238
>gb|CD938610.1|CD938610 OV.110H18F010312 OV Triticum aestivum cDNA clone OV110H18, mRNA
sequence
Length = 726
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 548 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 691
>gb|CK163206.1|CK163206 FGAS015826 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1090
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 565 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 708
>gb|CK163680.1|CK163680 FGAS016310 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1124
Score = 98.8 bits (210), Expect = 5e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL+ NPYG+TKLV+EDICRD+ RSDP+WKIILLRY
Sbjct: 459 GWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDLQRSDPDWKIILLRY 602
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.317 0.142 0.459
Matrix: BLOSUM62
Number of Hits to DB: 162,769,070
Number of Sequences: 636343
Number of extensions: 1604431
Number of successful extensions: 234188
Number of sequences better than 1.0e-020: 19
length of database: 122,413,413
effective HSP length: 41
effective length of database: 96,323,350
effective search space used: 1252203550
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)