TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY376130.1| Triticum aestivum ETTIN-like auxin response ... 269 2e-071
gb|BJ212985.1|BJ212985 BJ212985 Y. Ogihara unpublished cDNA... 184 6e-046
gb|AY376129.1| Triticum aestivum ETTIN-like auxin response ... 150 1e-035
gb|CA502175.1|CA502175 WHE4043_G07_N13ZT Wheat meiotic anth... 138 5e-032
gb|AY376128.1| Triticum aestivum ETTIN-like auxin response ... 96 2e-030
gb|CB307104.1|CB307104 HFIG089 Hessian fly infested cDNA li... 131 6e-030
>gb|AY376130.1| Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha)
mRNA, partial cds
Length = 2015
Score = 269 bits (581), Expect = 2e-071
Identities = 110/190 (57%), Positives = 134/190 (70%)
Frame = -1 / +1
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG AIQ KN L + FNS+S+K H+L+AVA+SLK+
Sbjct: 250 VNKKKLVSGDAVLFLRGDDGELRLGVRRAIQLKNEALLKAFNSNSSKIHTLSAVANSLKH 429
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISE 226
RSVFHI YNPRA ASE+IIPY KFLKSLN P CIG R Q +EDV+ERRSG++ I++
Sbjct: 430 RSVFHICYNPRAAASEFIIPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERRSGMITGIND 609
Query: 225 IDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEIXXXXXXXXXXXXXXXSKRTKLCP 46
+DP++W GSKW+SLLVRWEDG +CN Q+R+SPWEIEI SKRTKLCP
Sbjct: 610 VDPIRWTGSKWKSLLVRWEDGTDCNSQNRLSPWEIEIVGGSVSIAQSLSASSSKRTKLCP 789
Query: 45 QGNLDVPAMW 16
QGN+DVP ++
Sbjct: 790 QGNVDVPTLY 819
Score = 185 bits (399), Expect = 3e-046
Identities = 91/159 (57%), Positives = 97/159 (61%)
Frame = +2 / -1
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PP ISISHGD+L W L S PSSHLTSRL HFEP H MGS SL+ PDRLSLTSSL +*
Sbjct: 728 PPTISISHGDSLFWLLQSVPSSHLTSRLFHFEPVHLMGSTSLIPVIIPDRLSLTSSLPY* 549
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFVXXXXX 466
L L PIQ G RLFRN YGII S+A ALGL*+M*KTLL FKE ATA C F
Sbjct: 548 ILNLIPIQNGRFRLFRNFQYGIINSDAAALGL*QM*KTLLCFKELATADSVCIFELLLLK 369
Query: 467 XXXRXXFXX*IALXXPXXXXPXSPXXXNTXXXXXXXXLL 583
R F *+AL P P SP T LL
Sbjct: 368 AFRRASFLS*MALLTPSRSSPSSPRRNKTASPETSFFLL 252
Score = 178 bits (383), Expect = 5e-044
Identities = 90/173 (52%), Positives = 104/173 (60%)
Frame = +3 / -2
Query: 18 TLLERPNFPEDTTWFF*N*MQKGNEKQRQNHQLSRFPMEILYLGHYIQHRPPILPAGFST 197
T L RP+ PE T F *N M E+ R +HQLSR P EI+Y G+Y PPILPAGFS
Sbjct: 817 TELGRPHCPEGTV*FV*NWMLTETEQ*RPSHQLSRSPTEIVYFGYYSLCHPPILPAGFSI 638
Query: 198 SSQAISWDLFH*CEQPLQIAFH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILKQ*LL 377
+Q+ W L H* QIA H*HLH TES*+ QY++DD GSSGT E* I Q LL
Sbjct: 637 LNQST*WGLHH*YL*SFQIASH*HLHSRTES*TSFQYKMDDSGSSGTSSTE**IRMQQLL 458
Query: 378 DCKKCEKHFCSSRNQLQPSKNAALCCHY*NLQKGXHFXAE*XXAHPXXXHXHH 536
DC +CEKHF SRN Q + +L C Y* L +G HF AE H H HH
Sbjct: 457 DCNRCEKHFYVSRN*PQQTVCVSLSCCY*KLSEGPHF*AEWLSLHQVVVHHHH 299
Score = 178 bits (383), Expect = 5e-044
Identities = 98/189 (51%), Positives = 114/189 (60%)
Frame = -2 / +2
Query: 584 SIKXXXXQXXXCXXXXVMXVXXXWVXXXLFSXKMXPFLKISIVTAQSGIL*RL*LIP*RT 405
SIK VM V V FS KM PF K+SI TAQ L LIP*
Sbjct: 251 SIKRNLSLGMQSYFSVVMMVNYDLV*GEPFSLKMRPF*KLSIATAQRYTHCLLWLIP*NI 430
Query: 404 EVFFTFLTIQELLLQNILFHTLSS*RASIIQSVLEQGSTFSAIMKMLVKGDLEWLFALVK 225
EVFFT +TIQELL N+LF T SS*RA I+ VLE G FS +KML++GDLE L L+
Sbjct: 431 EVFFTSVTIQELLHPNLLFRTGSS*RA*IVHFVLE*GLRFSTGVKMLMRGDLE*LQVLMM 610
Query: 224 *IP*NGLARSGEACW*DGRTVLNVMAKIEYLHGKSR*LVVLSLFLIPFLHLVLKEPSCVL 45
* P GL ++G+ACW*DGR V+AKI+YL G+SR*LV SL L H VL E +C L
Sbjct: 611 *TPLGGLVQNGKACW*DGRMAQTVIAKIDYLRGRSR*LVARSLLLSLCQHPVLNELNCAL 790
Query: 44 REIWTFQQC 18
R +WT Q C
Sbjct: 791 RAMWTSQLC 817
Score = 166 bits (356), Expect = 3e-040
Identities = 87/161 (54%), Positives = 106/161 (65%)
Frame = -3 / +3
Query: 499 YSAXKXXPF*RFQ**QHKAAFFDGCS*FLEEQKCFSHFLQSKSYCFRIYYSIR*VPEEPQ 320
+SA K P FQ* Q K C *FLE KCFSH LQSKS C RIYYS+ VPEEP+
Sbjct: 336 HSA*K*GPSESFQ*QQLKDTHTVCCG*FLET*KCFSHLLQSKSCCIRIYYSVLEVPEEPE 515
Query: 319 SSSLYWSKDQLSVP**RC**KAIWSGCSH**NRSHEMAWLEVEKPAGKMGGRC*M*WPR* 140
SS LYW++ SV *RC**+AIW+ +** R H + W ++EKPAGKMGG +* P+*
Sbjct: 516 SSILYWNEV*DSVRE*RC**EAIWNDYRY**CRPH*VDWFKMEKPAGKMGGWHRL**PK* 695
Query: 139 SISMGNRDSWWFCLCFSFPFCI*F*KNQVVSSGKFGRSSNV 17
+IS+G+RDSWW L S I F* N V SG+ GR ++V
Sbjct: 696 TISVGDRDSWWLGLYCSVSVSIQF*TN*TVPSGQCGRPNSV 818
Score = 139 bits (298), Expect(2) = 6e-044
Identities = 60/105 (57%), Positives = 70/105 (66%)
Frame = +1 / -3
Query: 25 WNVQISLRTQLGSFRTRCRKGMRNRDRTTSYLDFPWRYSILAITFSTVLPSYQQASPLRA 204
W+V I+LR Q SFRT C + + NRDR T+YLD P R SILAIT +LPSYQQA P
Sbjct: 810 WDVHIALRAQFSSFRTGC*QRLSNRDRATNYLDLPRR*SILAITVCAILPSYQQAFPF*T 631
Query: 205 RPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 339
P +G+Y N NHSRSP NIF L + P SNT W I+ALQEL
Sbjct: 630 SPPNGVYIINTCNHSRSPLINIFTPVLNLKPHSNTKWTIQALQEL 496
Score = 58.8 bits (122), Expect(2) = 6e-044
Identities = 32/66 (48%), Positives = 38/66 (57%)
Frame = +1 / -3
Query: 388 NVKNTSVLQGISYSRQRMPLCAVTIEIFKKGXIFXLNSXXXTQXXXTXITXXX*HXXXXX 567
+VKNTS+ QGIS+SRQ + L AV IE F+KG IF LN T+ T IT *
Sbjct: 447 DVKNTSMFQGISHSRQCVYL*AVAIESFQKGLIFKLNGSPYTKS*FTIITTEK*DCIPRD 268
Query: 568 XXXFID 585
FID
Sbjct: 267 KFLFID 250
>gb|BJ212985.1|BJ212985 BJ212985 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh20d18 5', mRNA sequence
Length = 491
Score = 184 bits (396), Expect(2) = 6e-046
Identities = 74/145 (51%), Positives = 97/145 (66%)
Frame = -1 / +2
Query: 486 NXXLFEDFNSDSTKRHSLTAVADSLKNRSVFHISYNPRATASEYIIPYAKFLKSLNHPVC 307
N LF NS+ +K H+L+AVA SL+NRS+FH+ ++PR+ ASE+I+PY +F KSLNHP
Sbjct: 11 NEALFRAVNSNESKLHTLSAVASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHPFS 190
Query: 306 IGARINFQCHNEDVSERRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPW 127
IG R ++D +ER +G++ ISE+DP++WPGSKWR L VRW+DG CN Q RVSPW
Sbjct: 191 IGMRFKDSNDSDDANERSTGLISGISEVDPIRWPGSKWRCLQVRWDDGNHCNHQRRVSPW 370
Query: 126 EIEIXXXXXXXXXXXXXXXSKRTKL 52
EIE SKR KL
Sbjct: 371 EIERIGGSIQVNDCLSASSSKRAKL 445
Score = 124 bits (265), Expect = 1e-027
Identities = 62/127 (48%), Positives = 71/127 (55%)
Frame = +2 / -3
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PP +SISHG+TL W L PSSHLT R LHF+PGH MGS SL+ P LS SSL
Sbjct: 390 PPILSISHGETLRWWLQWLPSSHLTCRHLHFDPGHLMGSTSLIPEINPVDLSFASSLSLE 211
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFVXXXXX 466
L L P++ G +L NL YG I S+A LG + K LLF KE ATA C F
Sbjct: 210 SLNLIPMENGWFKLLENLQYGTINSDAPLLGSKQTWKILLFSKELATADSVCSFDSLLLT 31
Query: 467 XXXRXXF 487
R F
Sbjct: 30 ALKRASF 10
Score = 21.7 bits (41), Expect(2) = 6e-046
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +2
Query: 48 PQGNLDVP 25
PQGNLD P
Sbjct: 452 PQGNLDAP 475
>gb|AY376129.1| Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha)
mRNA, partial cds
Length = 2372
Score = 150 bits (322), Expect = 1e-035
Identities = 66/157 (42%), Positives = 88/157 (56%)
Frame = -1 / +2
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL G+ G LG A Q KN F + + SL VA ++
Sbjct: 518 VNKKKLVSGDAVLFLRGEDGVLQLGVRRAAQLKNVSPFPALFNQDSSLRSLGNVAHAVAM 697
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISE 226
+S+FHI YNPR SE+I+PY KF++S + P +G R + NED SERRS ++ S
Sbjct: 698 KSIFHIYYNPRLCESEFIVPYWKFMRSFSQPFSVGMRFKMKYENEDASERRSTGMITGSR 877
Query: 225 IDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEI 115
+K GSKW+ L+VRW+D EC +RVSPWEIE+
Sbjct: 878 ESDLKSHGSKWKCLVVRWDDDVECRRLNRVSPWEIEL 988
>gb|CA502175.1|CA502175 WHE4043_G07_N13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4043_G07_N13, mRNA sequence
Length = 777
Score = 138 bits (296), Expect(2) = 5e-032
Identities = 56/109 (51%), Positives = 70/109 (64%)
Frame = -1 / +2
Query: 378 PRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISEIDPMKWPGS 199
PR+ ASE+I+PY +F KSLNHP IG R ++D +ER +G++ ISE+DP++WPGS
Sbjct: 38 PRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNDSDDANERSTGLISGISEVDPIRWPGS 217
Query: 198 KWRSLLVRWEDGAECNGQDRVSPWEIEIXXXXXXXXXXXXXXXSKRTKL 52
KWR L VRW+DG CN Q RVSPWEIE SKR KL
Sbjct: 218 KWRCLQVRWDDGNHCNHQRRVSPWEIERIGGSIQVNDCLSASSSKRAKL 364
Score = 105 bits (225), Expect = 3e-022
Identities = 49/91 (53%), Positives = 57/91 (62%)
Frame = +2 / -1
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PP +SISHG+TL W L PSSHLT R LHF+PGH MGS SL+ P LS SSL
Sbjct: 309 PPILSISHGETLRWWLQWLPSSHLTCRHLHFDPGHLMGSTSLIPEINPVDLSFASSLSLE 130
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALG 379
L L P++ G +L NL YG I S+A LG
Sbjct: 129 SLNLIPMENGWFKLLENLQYGTINSDAPLLG 37
Score = 21.7 bits (41), Expect(2) = 5e-032
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +2
Query: 48 PQGNLDVP 25
PQGNLD P
Sbjct: 371 PQGNLDAP 394
>gb|AY376128.1| Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha)
mRNA, partial cds
Length = 2256
Score = 95.9 bits (203), Expect(2) = 2e-030
Identities = 43/111 (38%), Positives = 59/111 (53%)
Frame = -1 / +2
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL GD G LG A+Q KN F S + +L VA ++
Sbjct: 485 VNKKKLVSGDAVLFLRGDDGELRLGVRRAVQLKNGSAFPALYSQCSNLGTLANVAHAVAT 664
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERR 253
+S+F I YNPR + SE+I+PY KF KS + P +G+R + +ED +ERR
Sbjct: 665 KSMFQIFYNPRLSQSEFIVPYWKFTKSFSQPFSVGSRFKMRYESEDAAERR 817
Score = 57.4 bits (119), Expect(2) = 2e-030
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -1 / +2
Query: 210 WPGSKWRSLLVRWEDGAECNGQDRVSPWEIEI 115
W GSKW+ LLVRW+D E +RVSPWEIE+
Sbjct: 860 WRGSKWKCLLVRWDDDGEFRRPNRVSPWEIEL 955
>gb|CB307104.1|CB307104 HFIG089 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 698
Score = 131 bits (280), Expect(2) = 6e-030
Identities = 53/105 (50%), Positives = 66/105 (62%)
Frame = -1 / +3
Query: 366 ASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISEIDPMKWPGSKWRS 187
ASE+I+PY +F KSLNH IG R ++D +ER +G++ ISE+DP++WPGSKWR
Sbjct: 12 ASEFIVPYWRFSKSLNHSFSIGMRFKDSNESDDANERSTGLISGISEVDPIRWPGSKWRC 191
Query: 186 LLVRWEDGAECNGQDRVSPWEIEIXXXXXXXXXXXXXXXSKRTKL 52
L VRW+DG CN Q RVSPWEIE SKR KL
Sbjct: 192 LQVRWDDGNHCNHQRRVSPWEIERVGGSISVTDCLSASSSKRAKL 326
Score = 21.7 bits (41), Expect(2) = 6e-030
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +3
Query: 48 PQGNLDVP 25
PQGNLD P
Sbjct: 333 PQGNLDAP 356
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 472,439,818
Number of Sequences: 636343
Number of extensions: 6496495
Number of successful extensions: 76320
Number of sequences better than 1.0e-020: 8
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12683947934
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)