TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBL3a04.xg.2.1
         (369 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA618261.1|CA618261  wl1n.pk0031.e9 wl1n Triticum aestivu...    74   4e-024

>gb|CA618261.1|CA618261 wl1n.pk0031.e9 wl1n Triticum aestivum cDNA clone wl1n.pk0031.e9 5'
           end, mRNA sequence
          Length = 534

 Score = 74.4 bits (156), Expect(5) = 1e-022
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -2 / -1

                                          
Query: 95  LGFSCGTCSLCLSRIYNHST*TRN*NCSWSS 3
           +GFSCGTCSLCLS IYNH T*TRN*NCSWSS
Sbjct: 342 VGFSCGTCSLCLSHIYNHRT*TRN*NCSWSS 250




 Score = 70.7 bits (148), Expect(5) = 4e-024
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +1 / +2

                                          
Query: 4   EDQEQFQFRVHVL*LYIRDKQRLHVPQEKPS 96
           EDQEQFQFRVHVL*LYI DKQRLHVPQEKP+
Sbjct: 251 EDQEQFQFRVHVL*LYIWDKQRLHVPQEKPT 343




 Score = 36.8 bits (74), Expect(5) = 4e-024
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2 / +2

                           
Query: 98  ELKXKEAEHSGKED*D 145
           ELK KEAEHSGKED*D
Sbjct: 344 ELKTKEAEHSGKED*D 391




 Score = 35.0 bits (70), Expect(5) = 1e-022
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -2 / -2

                           
Query: 143 LSLLSRCVRPPXXSAR 96
           LSLLSRCVRPP  SAR
Sbjct: 389 LSLLSRCVRPPSSSAR 342




 Score = 27.2 bits (53), Expect(5) = 4e-024
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3 / +2

                             
Query: 126 AGKKTEITYSQHFMHE*V 179
           +GK+    YSQHFMHE*+
Sbjct: 371 SGKED*DYYSQHFMHE*L 424




 Score = 23.5 bits (45), Expect(5) = 1e-022
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2 / -3

                    
Query: 176 LFVHKMLRV 150
           LFVHKMLRV
Sbjct: 421 LFVHKMLRV 395




 Score = 20.8 bits (39), Expect(5) = 4e-024
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1 / +1

                   
Query: 214 LLAPFCSV 237
           LLAPFCS+
Sbjct: 460 LLAPFCSL 483




 Score = 20.8 bits (39), Expect(5) = 4e-024
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2 / +3

                    
Query: 176 SWILHKASI 202
           +WILHK S+
Sbjct: 420 NWILHKLSV 446




 Score = 19.4 bits (36), Expect(5) = 1e-022
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2 / -2

                  
Query: 233 EQNGASN 213
           EQNGASN
Sbjct: 479 EQNGASN 459




 Score = 18.5 bits (34), Expect(5) = 1e-022
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2 / -3

                 
Query: 209 CI*WTL 192
           CI*WTL
Sbjct: 457 CI*WTL 440



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 360,409,806
Number of Sequences: 636343
Number of extensions: 4860939
Number of successful extensions: 240126
Number of sequences better than 1.0e-020: 1
length of database: 122,413,413
effective HSP length: 51
effective length of database: 89,959,920
effective search space used: 6387154320
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)