TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA... 93 8e-032
gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anth... 90 3e-031
gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA... 90 3e-031
gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anth... 90 4e-031
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 87 4e-030
gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA... 90 4e-030
gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: L... 89 1e-029
gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: L... 89 2e-029
gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcu... 73 3e-026
gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcu... 73 4e-026
gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: L... 90 3e-023
gb|CD933956.1|CD933956 GR45.122I21F010720 GR45 Triticum aes... 82 6e-023
gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: L... 82 1e-022
gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: L... 82 1e-022
gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stresse... 82 1e-022
gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic flor... 82 1e-022
>gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 5', mRNA sequence
Length = 650
Score = 92.7 bits (196), Expect(2) = 8e-032
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P++ FNP+AC WAYG+N+FDL WR+ T+++H + +NED LW
Sbjct: 51 RFDKYLNFSNPLIASNFNPHACGWAYGMNMFDLSEWRKQNITDVYHTWQNLNEDRLLW 224
Score = 62.9 bits (131), Expect(2) = 8e-032
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L AGL++F+ T PLD+SWH++GLGYNP+++ + IR A+V
Sbjct: 237 LPAGLVTFWNRTFPLDRSWHLLGLGYNPNVNEKEIRRASV 356
>gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3237_C01_E01, mRNA sequence
Length = 573
Score = 90.0 bits (190), Expect(2) = 3e-031
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + F+PNAC WAYG+N+FDLE W++ T ++H++ MNE+ LW
Sbjct: 55 RFDKYLNFSNPNISQNFDPNACGWAYGMNIFDLEEWKKKDITGIYHKWQNMNENRLLW 228
Score = 63.4 bits (132), Expect(2) = 3e-031
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+FY T PLDKSWHV+GLGYNP++ I +AAV
Sbjct: 241 LPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAV 360
>gb|BJ298666.1|BJ298666 BJ298666 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 3', mRNA sequence
Length = 432
Score = 90.0 bits (190), Expect(2) = 3e-031
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = -3 / -1
Query: 302 KYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
KYLNF+ P++ FNP+AC WAYG+N+FDL WR+ T+++H + +NED LW
Sbjct: 429 KYLNFSNPLIASNFNPHACGWAYGMNMFDLSEWRKQNITDVYHTWQNLNEDRLLW 265
Score = 62.9 bits (131), Expect(2) = 3e-031
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = -3 / -1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L AGL++F+ T PLD+SWH++GLGYNP+++ + IR A+V
Sbjct: 252 LPAGLVTFWNRTFPLDRSWHLLGLGYNPNVNEKEIRRASV 133
>gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3238_C01_E02, mRNA sequence
Length = 683
Score = 90.0 bits (190), Expect(2) = 4e-031
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + F+PNAC WAYG+N+FDLE W++ T ++H++ MNE+ LW
Sbjct: 49 RFDKYLNFSNPNISQNFDPNACGWAYGMNIFDLEEWKKKDITGIYHKWQNMNENRLLW 222
Score = 63.4 bits (132), Expect(2) = 4e-031
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+FY T PLDKSWHV+GLGYNP++ I +AAV
Sbjct: 235 LPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAV 354
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 86.8 bits (183), Expect(2) = 4e-030
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = -3 / +2
Query: 308 YRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
+ +YLNF+ P + F+PNAC WAYG+N+FDLE W+++ T ++H++ MNE+ LW
Sbjct: 77 FDEYLNFSNPNISQNFDPNACGWAYGMNIFDLEEWKKNDITGIYHKWQNMNENRLLW 247
Score = 63.4 bits (132), Expect(2) = 4e-030
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+FY T PLDKSWHV+GLGYNP++ I +AAV
Sbjct: 260 LPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAV 379
>gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6k21 3', mRNA sequence
Length = 625
Score = 89.5 bits (189), Expect(2) = 4e-030
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = -3 / -3
Query: 299 YLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
YLNF+ P+V F+PNAC WA+G+N+FDL WRR TE++H + ++NEDG W
Sbjct: 557 YLNFSSPVVAKNFDPNACLWAFGMNIFDLAEWRRQNITEIYHFWQKLNEDGLHW 396
Score = 60.2 bits (125), Expect(2) = 4e-030
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PLD+SWHV+GLGYNP +S + AAV
Sbjct: 383 LPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDVERAAV 264
>gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 804
Score = 89.0 bits (188), Expect(2) = 1e-029
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = -3 / +1
Query: 299 YLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
YLNF+ P+V F+PNAC WA+G+N+FDL WRR TE++H + ++NEDG W
Sbjct: 313 YLNFSSPVVAKNFDPNACVWAFGMNMFDLAEWRRQNITEIYHFWQKLNEDGLHW 474
Score = 59.7 bits (124), Expect(2) = 1e-029
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PLD+SWHV+GLGYNP +S + AAV
Sbjct: 487 LPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDLERAAV 606
>gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 88.6 bits (187), Expect(2) = 2e-029
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = -3 / +1
Query: 299 YLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
YLNF+ P+V F+PNAC WA+G+N+FDL WRR TE++H + ++NEDG W
Sbjct: 241 YLNFSSPVVAKNFDPNACVWAFGMNMFDLAEWRRQNITEIYHFWQKVNEDGLHW 402
Score = 59.7 bits (124), Expect(2) = 2e-029
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PLD+SWHV+GLGYNP +S + AAV
Sbjct: 415 LPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDLERAAV 534
>gb|BE492933.1|BE492933 WHE0563_A11_A21ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0563_A11_A21, mRNA
sequence
Length = 522
Score = 73.5 bits (154), Expect(2) = 3e-026
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = -3 / +2
Query: 278 IVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
++ FNP+AC WAYG+N+FDL WR+ T+++H + +NED LW
Sbjct: 14 LIASNFNPHACGWAYGMNMFDLSEWRKQNITDVYHTWQNLNEDRLLW 154
Score = 62.9 bits (131), Expect(2) = 3e-026
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L AGL++F+ T PLD+SWH++GLGYNP+++ + IR A+V
Sbjct: 167 LPAGLVTFWNRTFPLDRSWHLLGLGYNPNVNEKEIRRASV 286
>gb|BE492753.1|BE492753 WHE0564_D04_D04ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0564_D04_D04, mRNA
sequence
Length = 590
Score = 73.5 bits (154), Expect(2) = 4e-026
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = -3 / +1
Query: 278 IVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
++ FNP+AC WAYG+N+FDL WR+ T+++H + +NED LW
Sbjct: 13 LIASNFNPHACGWAYGMNMFDLSEWRKQNITDVYHTWQNLNEDRLLW 153
Score = 62.9 bits (131), Expect(2) = 4e-026
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L AGL++F+ T PLD+SWH++GLGYNP+++ + IR A+V
Sbjct: 166 LPAGLVTFWNRTFPLDRSWHLLGLGYNPNVNEKEIRRASV 285
>gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 823
Score = 90.0 bits (190), Expect(2) = 3e-023
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + F+PNAC WAYG+N+FDLE W++ T ++H++ MNE+ LW
Sbjct: 536 RFDKYLNFSNPNISQNFDPNACGWAYGMNIFDLEEWKKKDITGIYHKWQNMNENRLLW 709
Score = 37.7 bits (76), Expect(2) = 3e-023
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3 / +1
Query: 116 AGLMSFYGNTKPLDKSWHVMGLGYNP 39
A LM+FY T PLDKSWHV + P
Sbjct: 727 ASLMTFYKLTHPLDKSWHVPWVRVQP 804
>gb|CD933956.1|CD933956 GR45.122I21F010720 GR45 Triticum aestivum cDNA clone GR45122I21,
mRNA sequence
Length = 546
Score = 82.2 bits (173), Expect(2) = 6e-023
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLN + P++R F+P+AC WA+G+NV DL WR T ++H + E N D LW
Sbjct: 61 RFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLW 234
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG + LD WHV+GLGY
Sbjct: 247 LPPGLLAFYGLVEALDPKWHVLGLGY 324
>gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1160
Score = 82.2 bits (173), Expect(2) = 1e-022
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLN + P++R F+P+AC WA+G+NV DL WR T ++H + E N D LW
Sbjct: 337 RFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLW 510
Score = 43.2 bits (88), Expect(2) = 1e-022
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG + LD WHV+GLGY
Sbjct: 523 LPPGLLAFYGLVEALDPKWHVLGLGY 600
>gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 905
Score = 82.2 bits (173), Expect(2) = 1e-022
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLN + P++R F+P+AC WA+G+NV DL WR T ++H + E N D LW
Sbjct: 201 RFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLW 374
Score = 43.2 bits (88), Expect(2) = 1e-022
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG + LD WHV+GLGY
Sbjct: 387 LPPGLLAFYGLVEALDPKWHVLGLGY 464
>gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4117_A09_A17, mRNA sequence
Length = 834
Score = 82.2 bits (173), Expect(2) = 1e-022
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLN + P++R F+P+AC WA+G+NV DL WR T ++H + E N D LW
Sbjct: 115 RFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLW 288
Score = 43.2 bits (88), Expect(2) = 1e-022
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG + LD WHV+GLGY
Sbjct: 301 LPPGLLAFYGLVEALDPKWHVLGLGY 378
>gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4362_C07_F14, mRNA sequence
Length = 747
Score = 82.2 bits (173), Expect(2) = 1e-022
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLN + P++R F+P+AC WA+G+NV DL WR T ++H + E N D LW
Sbjct: 417 RFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLW 590
Score = 43.2 bits (88), Expect(2) = 1e-022
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG + LD WHV+GLGY
Sbjct: 603 LPPGLLAFYGLVEALDPKWHVLGLGY 680
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 402,678,447
Number of Sequences: 636343
Number of extensions: 7132481
Number of successful extensions: 464338
Number of sequences better than 1.0e-020: 24
length of database: 122,413,413
effective HSP length: 50
effective length of database: 90,596,263
effective search space used: 5254583254
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)