TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE442894.1|BE442894 WHE1107_A11_B21ZS Wheat etiolated se... 84 2e-042
gb|CK200532.1|CK200532 FGAS009047 Triticum aestivum FGAS: L... 72 3e-036
gb|BE516585.1|BE516585 WHE0630_D09_G18ZA Wheat ABA-treated ... 77 7e-035
gb|BQ752969.1|BQ752969 WHE4121_D03_G05ZS Wheat salt-stresse... 86 5e-027
gb|CV770951.1|CV770951 FGAS065344 Triticum aestivum FGAS: L... 95 2e-024
gb|BE406386.1|BE406386 WHE0414_d05_g10zB Wheat etiolated se... 78 3e-024
gb|BJ255602.1|BJ255602 BJ255602 Y. Ogihara unpublished cDNA... 46 7e-023
gb|CK208627.1|CK208627 FGAS020341 Triticum aestivum FGAS: L... 46 2e-022
gb|BQ578318.1|BQ578318 WHE0301_E09_I17ZS Wheat unstressed s... 46 3e-022
gb|BE488890.1|BE488890 WHE1078_A04_B08ZS Wheat unstressed s... 46 3e-022
gb|BE425801.1|BE425801 WHE0337_D09_D09ZS Wheat unstressed s... 46 3e-022
gb|BJ259534.1|BJ259534 BJ259534 Y. Ogihara unpublished cDNA... 45 5e-022
>gb|BE442894.1|BE442894 WHE1107_A11_B21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1107_A11_B21,
mRNA sequence
Length = 662
Score = 84.5 bits (178), Expect(3) = 2e-042
Identities = 37/77 (48%), Positives = 49/77 (63%)
Frame = +2 / +2
Query: 227 TMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRRHDYPQLQFFLNDLPGNDFNNLFLL 406
TMVVADLGCSSGPN L ++EV G+I+ + + + +LQF LNDLP NDFN +F
Sbjct: 173 TMVVADLGCSSGPNALFIVAEVTGMISDYNQNTNEEQHGVELQFLLNDLPKNDFNLIFQS 352
Query: 407 IQQFNKSIARNHKGEAA 457
+ QF+ + EAA
Sbjct: 353 LDQFHTVTRKGEGDEAA 403
Score = 73.0 bits (153), Expect(3) = 2e-042
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2 / +2
Query: 461 ALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQL 589
A PP Y+ GLPGSFY R+ PS+SVHLFHS +S+HW S+ ++L
Sbjct: 401 ATPPYYVVGLPGSFYNRLCPSQSVHLFHSSYSLHWLSKVPEEL 529
Score = 55.1 bits (114), Expect(3) = 2e-042
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2 / +2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVV 238
M +E LHMATG+GE SY NSRI K M + +P+L+ Y++L + +V
Sbjct: 20 MKVEDVLHMATGDGENSYAANSRIPMKAMLKNRPLLQRTVEEVYTSLSSASTMV 181
>gb|CK200532.1|CK200532 FGAS009047 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 808
Score = 72.1 bits (151), Expect(4) = 3e-036
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2 / +3
Query: 467 PPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQL 589
PP Y+ GLPGSFY R+ PS+SVHLFHS +S+HW S+ QL
Sbjct: 513 PPYYVVGLPGSFYNRLCPSQSVHLFHSSYSLHWLSKVPDQL 635
Score = 56.1 bits (116), Expect(4) = 3e-036
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2 / +3
Query: 65 AAMPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSAL 217
+A M +E LHMATG+GE SY NSRI K M + +P+L+ Y++L
Sbjct: 108 SATTMKVEDVLHMATGDGENSYAANSRIPMKAMLKNRPLLQRTVEEVYTSL 260
Score = 41.4 bits (84), Expect(4) = 3e-036
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2 / +3
Query: 347 QLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHKGEA 454
+LQF LNDLP NDFN +F + QF+ + EA
Sbjct: 399 ELQFLLNDLPRNDFNLIFQSLDQFHTVTRKGEGDEA 506
Score = 40.0 bits (81), Expect(4) = 3e-036
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 242 DLGCSSGPNTLRFISEVIGIIARHCK 319
DLGCSSGPN L ++EV G+I+ + K
Sbjct: 297 DLGCSSGPNALFIVTEVTGMISDYSK 374
>gb|BE516585.1|BE516585 WHE0630_D09_G18ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE0630_D09_G18, mRNA sequence
Length = 515
Score = 77.1 bits (162), Expect(4) = 7e-035
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2 / +2
Query: 458 EALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
EALPP YI+GLPGSFYT++FP SVHLFHS + +HW S+
Sbjct: 290 EALPPFYIAGLPGSFYTKLFPRHSVHLFHSSYCLHWRSE 406
Score = 56.1 bits (116), Expect(4) = 7e-035
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = +2 / +2
Query: 314 CKEHDRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHKGEA 454
C + +LQ FLNDLPGNDFN +F ++QF +SI HK EA
Sbjct: 155 CNHDKLHGNLMELQVFLNDLPGNDFNRVFQSLEQFKESITITHKLEA 295
Score = 46.4 bits (95), Expect(4) = 7e-035
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +2 / +2
Query: 185 EEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
E+A LL TM+V DLGCSSG NTL F+S VI I
Sbjct: 32 EKAVIEVCMDLLHPTMIVVDLGCSSGENTLIFVSNVIEAI 151
Score = 29.0 bits (57), Expect(4) = 7e-035
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 791 DIYITKNIPPPMVEMFHQHF 850
+IYI + PP +V+++ +HF
Sbjct: 455 NIYIARTTPPSVVKLYQEHF 514
>gb|BQ752969.1|BQ752969 WHE4121_D03_G05ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4121_D03_G05, mRNA sequence
Length = 664
Score = 85.8 bits (181), Expect(2) = 5e-027
Identities = 41/111 (36%), Positives = 60/111 (54%)
Frame = +2 / +1
Query: 230 MVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRRHDYPQLQFFLNDLPGNDFNNLFLLI 409
+VVADLGCSSGPNTLR +SE IG + + ++ + ++QFFLNDLPGNDFN +F +
Sbjct: 196 IVVADLGCSSGPNTLRVVSEGIGAVQFYTRKSEEERRAVEVQFFLNDLPGNDFNLVFRSL 375
Query: 410 QQFNKSIARNHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVH 562
++ + + LP Y L +F S ++ S +H
Sbjct: 376 EELEDLGGKETQPYYVAGLPGSYYRKLFPFRSVHLFHSSYSLMWRSKVCMH 528
Score = 57.0 bits (118), Expect(2) = 5e-027
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2 / +1
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSAL 217
+ MATGNGE SY NSR+QEK + + +PVL EA Y +L
Sbjct: 55 VRMATGNGENSYAANSRLQEKAILETRPVLREAIEEVYKSL 177
>gb|CV770951.1|CV770951 FGAS065344 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 861
Score = 95.5 bits (202), Expect(2) = 2e-024
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2 / +2
Query: 227 TMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRRHDYPQLQFFLNDLPGNDFNNLFLL 406
TMVVADLGCSSGPNTLR +SEVIG + + ++ + + ++QFFLNDLPGNDFN +F
Sbjct: 221 TMVVADLGCSSGPNTLRVVSEVIGAVQFYTRKSEEQRRAVEVQFFLNDLPGNDFNLVFRS 400
Query: 407 IQQFNKSIARNHKGEAAEALPPCYISGLPGSFYTRIFPS 523
++Q + + LP Y + L S F S
Sbjct: 401 LEQLEDLGGKETQPYYVAGLPGSYYTKLFPSRSVHFFHS 517
Score = 38.6 bits (78), Expect(2) = 2e-024
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2 / +2
Query: 119 ETSYTKNSRIQEKVMFQIKPVLEEATRAAYSAL 217
E SY NSR+QEK + + +P+L +A Y +L
Sbjct: 107 ENSYAANSRLQEKAILETRPMLRKAIEEVYKSL 205
>gb|BE406386.1|BE406386 WHE0414_d05_g10zB Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0414_d05_g10, mRNA
sequence
Length = 379
Score = 78.0 bits (164), Expect(2) = 3e-024
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = +2 / +2
Query: 227 TMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRRHDYPQLQFFLNDLPGNDFNNLFLL 406
TMVVADLGCSSGPN L ++EV G+I+ + + + +LQF LNDLP NDFN +F
Sbjct: 191 TMVVADLGCSSGPNALFIVAEVTGMISDYNQNTNEEQHGVELQFLLNDLPKNDFNLIFQS 370
Query: 407 IQQ 415
+ Q
Sbjct: 371 LDQ 379
Score = 55.1 bits (114), Expect(2) = 3e-024
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2 / +2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVV 238
M +E LHMATG+GE SY NSRI K M + +P+L+ Y++L + +V
Sbjct: 38 MKVEDVLHMATGDGENSYAANSRIPMKAMLKNRPLLQRTVEEVYTSLSSASTMV 199
>gb|BJ255602.1|BJ255602 BJ255602 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh1i12 5', mRNA sequence
Length = 626
Score = 45.5 bits (93), Expect(4) = 7e-023
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +1
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
PGSFY R+F S S+HL S S+HW S+A + L Q
Sbjct: 409 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHLTRNQ 519
Score = 44.6 bits (91), Expect(4) = 7e-023
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +1
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 166 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 288
Score = 44.1 bits (90), Expect(4) = 7e-023
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2 / +1
Query: 68 AMPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
A P ++ +HM G GETSY +NSRIQ ++KP++E
Sbjct: 19 AKPSLQKQMVHMNQGQGETSYARNSRIQNAQQNRMKPLIE 138
Score = 29.0 bits (57), Expect(4) = 7e-023
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +1
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 295 PEVCVLLNDLPDNDFNTV 348
>gb|CK208627.1|CK208627 FGAS020341 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1175
Score = 45.5 bits (93), Expect(4) = 2e-022
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +3
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
PGSFY R+F S S+HL S S+HW S+A + L Q
Sbjct: 441 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHLTRNQ 551
Score = 44.6 bits (91), Expect(4) = 2e-022
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +3
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 198 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 320
Score = 42.3 bits (86), Expect(4) = 2e-022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +3
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
+HM G GETSY +NSRIQ ++KP++E
Sbjct: 78 VHMNQGQGETSYARNSRIQNAQQNRMKPLIE 170
Score = 29.0 bits (57), Expect(4) = 2e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 327 PEVCVLLNDLPDNDFNTV 380
>gb|BQ578318.1|BQ578318 WHE0301_E09_I17ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0301_E09_I17, mRNA
sequence
Length = 652
Score = 45.5 bits (93), Expect(4) = 3e-022
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
PGSFY R+F S S+HL S S+HW S+A + L Q
Sbjct: 434 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHLTRNQ 544
Score = 44.6 bits (91), Expect(4) = 3e-022
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +2
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 191 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 313
Score = 42.3 bits (86), Expect(4) = 3e-022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
+HM G GETSY +NSRIQ ++KP++E
Sbjct: 71 VHMNQGQGETSYARNSRIQNAQQNRMKPLIE 163
Score = 29.0 bits (57), Expect(4) = 3e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 320 PEVCVLLNDLPDNDFNTV 373
>gb|BE488890.1|BE488890 WHE1078_A04_B08ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1078_A04_B08,
mRNA sequence
Length = 558
Score = 45.5 bits (93), Expect(4) = 3e-022
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
PGSFY R+F S S+HL S S+HW S+A + L Q
Sbjct: 407 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHLTRNQ 517
Score = 44.6 bits (91), Expect(4) = 3e-022
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +2
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 164 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 286
Score = 42.3 bits (86), Expect(4) = 3e-022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
+HM G GETSY +NSRIQ ++KP++E
Sbjct: 44 VHMNQGQGETSYARNSRIQNAQQNRMKPLIE 136
Score = 29.0 bits (57), Expect(4) = 3e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 293 PEVCVLLNDLPDNDFNTV 346
>gb|BE425801.1|BE425801 WHE0337_D09_D09ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0337_D09_D09, mRNA
sequence
Length = 552
Score = 45.5 bits (93), Expect(4) = 3e-022
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
PGSFY R+F S S+HL S S+HW S+A + L Q
Sbjct: 413 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHLTRNQ 523
Score = 44.6 bits (91), Expect(4) = 3e-022
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +2
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 170 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 292
Score = 42.3 bits (86), Expect(4) = 3e-022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
+HM G GETSY +NSRIQ ++KP++E
Sbjct: 50 VHMNQGQGETSYARNSRIQNAQQNRMKPLIE 142
Score = 29.0 bits (57), Expect(4) = 3e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 299 PEVCVLLNDLPDNDFNTV 352
>gb|BJ259534.1|BJ259534 BJ259534 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh21d23 5', mRNA sequence
Length = 497
Score = 44.6 bits (91), Expect(4) = 5e-022
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2 / +2
Query: 491 PGSFYTRIFPSESVHLFHSLFSVHWHSQASQQL 589
PGSFY R+F S S+HL S S+HW S+A + L
Sbjct: 392 PGSFYERLFTSGSMHLICSSNSLHWLSKAPEHL 490
Score = 44.6 bits (91), Expect(4) = 5e-022
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2 / +2
Query: 209 SALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDR 331
+ L P +++ADLGCSSGPN L +S + I +C + ++
Sbjct: 149 NTLFPGKILIADLGCSSGPNALALVSIAVEAIHSYCLQFEQ 271
Score = 42.3 bits (86), Expect(4) = 5e-022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 95 LHMATGNGETSYTKNSRIQEKVMFQIKPVLE 187
+HM G GETSY +NSRIQ ++KP++E
Sbjct: 29 VHMNQGQGETSYARNSRIQNAQQNRMKPLIE 121
Score = 29.0 bits (57), Expect(4) = 5e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 344 PQLQFFLNDLPGNDFNNL 397
P++ LNDLP NDFN +
Sbjct: 278 PEVCVLLNDLPDNDFNTV 331
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,338,801,857
Number of Sequences: 636343
Number of extensions: 23273546
Number of successful extensions: 148650
Number of sequences better than 1.0e-020: 16
length of database: 122,413,413
effective HSP length: 55
effective length of database: 87,414,548
effective search space used: 29283873580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)