TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3923171.2.1
         (570 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA486940.1|CA486940  WHE4337_G03_M05ZS Wheat meiotic anth...    67   3e-025

>gb|CA486940.1|CA486940 WHE4337_G03_M05ZS Wheat meiotic anther cDNA library Triticum
           aestivum cDNA clone WHE4337_G03_M05, mRNA sequence
          Length = 415

 Score = 66.6 bits (139), Expect(3) = 3e-025
 Identities = 27/36 (75%), Positives = 28/36 (77%)
 Frame = -1 / -3

                                               
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
           ML LDKVT *LISWPQPP AAWR AP R PPW+  L
Sbjct: 182 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 75




 Score = 58.8 bits (122), Expect(3) = 1e-020
 Identities = 30/48 (62%), Positives = 33/48 (68%)
 Frame = +3 / +2

                                                           
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
           Y     +AKEVDAAELRAKLLTEAAAN*LI +  CRA A +  L   P
Sbjct: 65  YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 208




 Score = 46.4 bits (95), Expect(3) = 3e-025
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = -2 / -1

                                      
Query: 326 ATCWAIVAGDRVRHPRLLLSCRSGSRV 246
           ATCWAIVAG RV HPRLLL  RS   V
Sbjct: 82  ATCWAIVAGHRVWHPRLLLVNRSSGAV 2




 Score = 46.0 bits (94), Expect(3) = 1e-020
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3 / +2

                           
Query: 282 WVPDPVTGYYRPAGSA 329
           WVPDPVTGYYRPAGSA
Sbjct: 38  WVPDPVTGYYRPAGSA 85




 Score = 39.6 bits (80), Expect(3) = 3e-025
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2 / -1

                                            
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
           ALGQ A  STSA++KA EARW+       CSS+
Sbjct: 268 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 170




 Score = 32.2 bits (64), Expect(3) = 1e-020
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +1 / +3

                                 
Query: 442 VHLASPALIFALVDPRARWPRA 507
           +HLAS AL  ALVD  A WPRA
Sbjct: 204 LHLASLALRSALVDRGAPWPRA 269



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 499,705,160
Number of Sequences: 636343
Number of extensions: 8592475
Number of successful extensions: 217650
Number of sequences better than 1.0e-020: 1
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12237330049
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)