TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG605173.1|BG605173 WHE2328_D05_H10ZS Wheat pre-anthesis... 285 1e-075
gb|CA728456.1|CA728456 wdi1c.pk004.m18 wdi1c Triticum aesti... 158 6e-048
gb|BF484308.1|BF484308 WHE2321_G07_M13ZS Wheat pre-anthesis... 159 7e-048
gb|BE498406.1|BE498406 WHE0952_A07_A14ZS Wheat pre-anthesis... 171 4e-042
gb|BJ247311.1|BJ247311 BJ247311 Y. Ogihara unpublished cDNA... 80 4e-041
gb|BJ253366.1|BJ253366 BJ253366 Y. Ogihara unpublished cDNA... 94 1e-036
gb|BM140477.1|BM140477 WHE0484_h03_o06zS Wheat Fusarium gra... 83 5e-028
gb|BJ303490.1|BJ303490 BJ303490 Y. Ogihara unpublished cDNA... 70 5e-027
gb|BJ240434.1|BJ240434 BJ240434 Y. Ogihara unpublished cDNA... 58 9e-025
gb|AL828870.1|AL828870 AL828870 q:141 Triticum aestivum cDN... 83 1e-024
gb|BJ309363.1|BJ309363 BJ309363 Y. Ogihara unpublished cDNA... 70 2e-023
gb|BJ235223.1|BJ235223 BJ235223 Y. Ogihara unpublished cDNA... 82 1e-021
gb|BQ806531.1|BQ806531 WHE3580_B06_C12ZS Wheat developing g... 77 2e-021
>gb|BG605173.1|BG605173 WHE2328_D05_H10ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2328_D05_H10, mRNA sequence
Length = 414
Score = 285 bits (616), Expect = 1e-075
Identities = 110/136 (80%), Positives = 124/136 (91%)
Frame = +1 / +1
Query: 634 YNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQ 813
YNCTIDGGQDTLYDHKGLHYFK C+I+GSVDFIFGFGRS YE+CRI S+VKE+AVLTAQQ
Sbjct: 7 YNCTIDGGQDTLYDHKGLHYFKDCVIKGSVDFIFGFGRSLYENCRIVSIVKEIAVLTAQQ 186
Query: 814 RSKSIEGAIDTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQ 993
R+K+IEGAI++GFSFKNCSI GG IYLGRA GDSSRV+Y+YT+M +EVVPVGWDGW
Sbjct: 187 RTKTIEGAIESGFSFKNCSIMSEGGGDIYLGRAXGDSSRVIYAYTEMSKEVVPVGWDGWN 366
Query: 994 IAKPESSGIYYGEFKC 1041
I +PESSGIYYGEFKC
Sbjct: 367 IKQPESSGIYYGEFKC 414
Score = 203 bits (438), Expect = 3e-051
Identities = 95/136 (69%), Positives = 103/136 (75%)
Frame = -1 / -2
Query: 1040 HLNSP**MPLLSGLAICQPSQPTGTTSSPIFVYE*TTREESPQARPR*ICPPLTPPMLQF 861
HLNSP**+PLLSG + PS PTGTTS I V * TR+ESP A PR*I PP + MLQF
Sbjct: 413 HLNSP**IPLLSGCLMFHPSHPTGTTSLLISV*A*MTRDESPHALPR*ISPPPSLMMLQF 234
Query: 860 LNEKPVSMAPSMDLERCCAVSTATSLTTDSMRQSS*KLRPKPKMKSTLPRMRQPLK*CRP 681
LNE P+S+APSM L RCCAV TA S T D+MRQ S K P PKMKSTLP + Q LK*C P
Sbjct: 233 LNENPLSIAPSMVLVRCCAVRTAISFTMDTMRQFSYKDLPNPKMKSTLPLITQSLK*CSP 54
Query: 680 LWSYSVSCPPSMVQL* 633
LWSYSVSCPPSMVQL*
Sbjct: 53 LWSYSVSCPPSMVQL* 6
>gb|CA728456.1|CA728456 wdi1c.pk004.m18 wdi1c Triticum aestivum cDNA clone wdi1c.pk004.m18
5' end, mRNA sequence
Length = 633
Score = 158 bits (340), Expect(3) = 6e-048
Identities = 66/149 (44%), Positives = 87/149 (58%)
Frame = +1 / +3
Query: 385 SKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAP 564
SKP+IT + VV W+D A+ G DG+ + T +A++ V S+YFTA + F+N AP
Sbjct: 18 SKPYITLEGAGRDVTVVEWHDKASDRGPDGQQLRTYNTASVTVLSNYFTAKNISFKNTAP 197
Query: 565 LAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFG 744
PG +GGQAVA R+ G K + C G QDTL D G HYF+ C I GS+DFIFG G
Sbjct: 198 APMPGMQGGQAVAFRVSGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIEGSIDFIFGNG 377
Query: 745 RSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
RS Y+DC + S + + A R E
Sbjct: 378 RSLYKDCELHSTARRFGSVAAHGRQGPCE 464
Score = 50.1 bits (103), Expect(3) = 6e-048
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +Y GRA G SR+VY+YT + P GWD W
Sbjct: 507 GMLYAGRAMGQYSRIVYAYTYFDNVIAPGGWDDW 608
Score = 22.6 bits (43), Expect(3) = 6e-048
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / +3
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 468 TGFAFVNCRVTG 503
>gb|BF484308.1|BF484308 WHE2321_G07_M13ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2321_G07_M13, mRNA sequence
Length = 355
Score = 159 bits (341), Expect(2) = 7e-048
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = +1 / +2
Query: 355 QFREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTA 534
++REK+F N+SKP++TF+SDPK PA++ W+DTAAT GKDGKPVGTVGS T A+ESDYF A
Sbjct: 119 EYREKIFFNLSKPYVTFKSDPKNPAIIAWSDTAATLGKDGKPVGTVGSTTCAIESDYFVA 298
Query: 535 YGVVFRNDAPLAKPGAKGG 591
GVVF+NDAPLAKPGAKGG
Sbjct: 299 XGVVFKNDAPLAKPGAKGG 355
Score = 120 bits (256), Expect(2) = 6e-034
Identities = 55/77 (71%), Positives = 56/77 (72%)
Frame = -1 / -2
Query: 590 PPLAPGLASGASFRNTTPYAVK*SDSTASVALPTVPTGLPSLPFVAAVSFQTTTAGFLGS 411
PPLAPGLASGASF NTTP A K*SDS A V LPTVPTG PS P VAAVS Q AGFLGS
Sbjct: 354 PPLAPGLASGASFLNTTPXATK*SDSMAQVVLPTVPTGFPSFPSVAAVSLQAMMAGFLGS 175
Query: 410 DRNVMNGLLMFRNSFSR 360
D V GLL + FSR
Sbjct: 174 DLKVT*GLLRLKKIFSR 124
Score = 53.8 bits (111), Expect(2) = 7e-048
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +1 / +2
Query: 256 PSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
P G GDY ITAA++ IP NT RVILDLKPG
Sbjct: 23 PQGGGDYKTITAAIDAIPEGNTGRVILDLKPG 118
Score = 46.0 bits (94), Expect(2) = 6e-034
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = -1 / -2
Query: 353 APGLRSRITRLVLLTGISSSAAVMLV*SPLPLG 255
+PG RSRITR VL +G++S AAVM++*SP P G
Sbjct: 120 SPGFRSRITRPVLPSGMASIAAVMVL*SPPPWG 22
>gb|BE498406.1|BE498406 WHE0952_A07_A14ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_A07_A14, mRNA sequence
Length = 619
Score = 171 bits (367), Expect(2) = 4e-042
Identities = 69/135 (51%), Positives = 93/135 (68%)
Frame = +1 / +1
Query: 244 YVVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPGAQFREKLFLNISKPFITFRSDPKK 423
Y + + G Y +I+ + +IP NT+R + +LKPG FREK+F+ KPF+T +SDP
Sbjct: 214 YTIFGAEDGMYKSISECISNIPNDNTRRHMFNLKPGTVFREKVFVGKDKPFVTLKSDPSN 393
Query: 424 PAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVA 603
PAV+VWNDTA T GKDGK + + GS+T+ +ESDYF AYG++ +NDA AK G K QA A
Sbjct: 394 PAVIVWNDTAMTKGKDGKLLTSRGSSTVTIESDYFIAYGIIIKNDALPAKAGDKQVQATA 573
Query: 604 VRLFGTKTQIYNCTI 648
+ + GTK YNCTI
Sbjct: 574 LHVTGTKAIFYNCTI 618
Score = 112 bits (239), Expect = 1e-023
Identities = 62/127 (48%), Positives = 73/127 (57%)
Frame = -1 / -3
Query: 647 MVQL*ICVLVPNSRTATAWPPLAPGLASGASFRNTTPYAVK*SDSTASVALPTVPTGLPS 468
+VQL* VP + A A L+P LA ASF P A+K*SDS +V LP LPS
Sbjct: 617 IVQL*KIAFVPVTCNAVACTCLSPALAGSASFLMIIP*AMK*SDSMVTVLLPREVRSLPS 438
Query: 467 LPFVAAVSFQTTTAGFLGSDRNVMNGLLMFRNSFSRN*APGLRSRITRLVLLTGISSSAA 288
LP V AVSF T TAG GSD +V GL N+FSRN PG R I RLVL G+ +
Sbjct: 437 LPLVMAVSFHTITAGLEGSDFSVTKGLSFPTNTFSRNTVPGFRLNICRLVLSLGMLEMHS 258
Query: 287 VMLV*SP 267
+ML+ P
Sbjct: 257 LMLLYMP 237
Score = 22.6 bits (43), Expect(2) = 4e-042
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1 / +1
Query: 169 QKSVGDGGKEPLDKKLSEAEKKKVTYVVDP 258
Q+S LD KLS AE ++ VDP
Sbjct: 124 QESKTSVATSTLDAKLSTAEASRLGNGVDP 213
>gb|BJ247311.1|BJ247311 BJ247311 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf28i24 5', mRNA sequence
Length = 521
Score = 79.9 bits (168), Expect(4) = 4e-041
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +1 / +3
Query: 202 LDKKLSEAEKKKVTYVVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
+D+ LS+AE K TYVVDP G GDY ITAA++ IP NT RVILDLKPG
Sbjct: 189 IDESLSKAEDNKTTYVVDPKGGGDYKTITAAIDAIPEGNTGRVILDLKPG 338
Score = 67.0 bits (140), Expect(4) = 4e-041
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 439 WNDTAATNGKDGKPVGTVGSATLAVESDYFTA 534
W+DTAAT GKDGKPVGTVGS T A+ESDYF A
Sbjct: 424 WSDTAATLGKDGKPVGTVGSTTCAIESDYFVA 519
Score = 59.7 bits (124), Expect(3) = 7e-024
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = -1 / -2
Query: 353 APGLRSRITRLVLLTGISSSAAVMLV*SPLPLGSTTYVTFFFSASD 216
+PG RSRITR VL +G++S AAVM++*SP PLGSTT V SA D
Sbjct: 340 SPGFRSRITRPVLPSGMASIAAVMVL*SPPPLGSTT*VVLLSSALD 203
Score = 57.9 bits (120), Expect(3) = 7e-024
Identities = 27/41 (65%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 536 YAVK*SDSTASVALPTVPTGLPSLPFVAAVSFQTTTAGFLG 414
YA K*SDS A V LPTVPTG PS P VAAVS Q LG
Sbjct: 521 YATK*SDSMAQVVLPTVPTGFPSFPSVAAVSLQGDDGRVLG 399
Score = 55.1 bits (114), Expect(4) = 4e-041
Identities = 17/27 (62%), Positives = 26/27 (96%)
Frame = +1 / +3
Query: 355 QFREKLFLNISKPFITFRSDPKKPAVV 435
++REK+FLN+SKP++TF+SDPK PA++
Sbjct: 339 EYREKIFLNLSKPYVTFKSDPKNPAII 419
Score = 32.2 bits (64), Expect(3) = 7e-024
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 428 AGFLGSDRNVMNGLLMFRNSFSR 360
AGFLGSD V GLL R FSR
Sbjct: 412 AGFLGSDLKVT*GLLRLRKIFSR 344
Score = 24.0 bits (46), Expect(4) = 4e-041
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 157 ALYAQKSVGDGG 192
ALYA+K+VGD G
Sbjct: 147 ALYAKKAVGDTG 182
>gb|BJ253366.1|BJ253366 BJ253366 Y. Ogihara unpublished cDNA library, Wh_f Triticum aestivum
cDNA clone whf28i24 3', mRNA sequence
Length = 581
Score = 94.1 bits (199), Expect(2) = 1e-036
Identities = 33/43 (76%), Positives = 39/43 (90%)
Frame = +1 / -1
Query: 943 YTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADAKKK 1071
YT+M +EVVPVGWDGW I +PESSGIYYGEFKC GPG+DA+K+
Sbjct: 581 YTEMSKEVVPVGWDGWNIKQPESSGIYYGEFKCSGPGSDARKR 453
Score = 81.3 bits (171), Expect(2) = 1e-036
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +1 / -1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPPP 1170
G + +KRVGWA+DLTEAQAKPF+GTHY+ GD+WI PPP
Sbjct: 479 GPGSDARKRVGWAVDLTEAQAKPFIGTHYIFGDSWILPPP 360
Score = 63.4 bits (132), Expect(2) = 8e-022
Identities = 29/41 (70%), Positives = 31/41 (75%)
Frame = -1 / +1
Query: 1067 FLASAPGPKHLNSP**MPLLSGLAICQPSQPTGTTSSPIFV 945
FLAS PGP HLNSP**+PLLSG + PS PTGTTS I V
Sbjct: 457 FLASDPGPLHLNSP**IPLLSGCLMFHPSHPTGTTSLLISV 579
Score = 62.0 bits (129), Expect(2) = 8e-022
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = -3 / +3
Query: 1167 RWLDPRVAEDVVCADEWLGLRLGEVQRPPHPL 1072
RW +PRVAEDVVCADE LGL LGE+ PP PL
Sbjct: 363 RWQNPRVAEDVVCADEGLGLGLGEIHSPPDPL 458
>gb|BM140477.1|BM140477 WHE0484_h03_o06zS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0484_h03_o06,
mRNA sequence
Length = 546
Score = 83.1 bits (175), Expect(3) = 5e-028
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +1 / +1
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QA+AVR+ G + Y C+ QDTL D G HY+ GC I G DFI G GR+ +E C +
Sbjct: 85 QAIAVRVAGDRAAFYGCSFSSFQDTLLDDNGRHYYCGCYIEGGTDFICGNGRALFEKCHL 264
Query: 772 ESVVKEVAVLTAQQRS 819
S TAQ+R+
Sbjct: 265 HSTSLTGGAFTAQKRA 312
Score = 55.6 bits (115), Expect(3) = 5e-028
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +1 / +1
Query: 844 TGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
TG+SF C + GV LGR W SRVV++ T M V P GW+ W + + Y
Sbjct: 328 TGYSFVRCKLTGVGVSTSILGRPWEPYSRVVFALTYMSATVSPRGWNDWNHTANQRTAFY 507
Score = 25.4 bits (49), Expect(3) = 5e-028
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 1021 YYGEFKCFGPGA 1056
+YG+++C+G GA
Sbjct: 502 FYGQYQCYGQGA 537
>gb|BJ303490.1|BJ303490 BJ303490 Y. Ogihara unpublished cDNA library, Wh_yd Triticum aestivum
cDNA clone whyd19m22 5', mRNA sequence
Length = 689
Score = 69.8 bits (146), Expect(4) = 5e-027
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADA 1062
G +Y GRA G SR+VY+YT + P GWD W +S ++G +K +GPGADA
Sbjct: 158 GMLYAGRAMGQYSRIVYAYTYFDNVIAPGGWDDWDHNSNKSMTAFFGMYKNWGPGADA 331
Score = 53.3 bits (110), Expect(4) = 5e-027
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 652 GGQDTLYDHKGLHYFKGCLIRGSVDFIFGFG 744
G QDTL D G HYF+ C I GS+DFIFG G
Sbjct: 15 GAQDTLCDDAGRHYFRDCYIEGSIDFIFGRG 107
Score = 32.2 bits (64), Expect(4) = 5e-027
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1 / +2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQP 1164
G A V WA +L A+PF+G +V G W+ P
Sbjct: 314 GPGADAVHGVPWARELDYFTARPFLGKSFVNGFHWLTP 427
Score = 22.6 bits (43), Expect(4) = 5e-027
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 119 TGFAFVNCRVTG 154
>gb|BJ240434.1|BJ240434 BJ240434 Y. Ogihara unpublished cDNA library, Wh_e Triticum aestivum
cDNA clone whe15k14 3', mRNA sequence
Length = 629
Score = 57.9 bits (120), Expect(4) = 9e-025
Identities = 24/60 (40%), Positives = 30/60 (50%)
Frame = +1 / -1
Query: 844 TGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
TG+SF C + GV LGR W SRVV++ T M V P GWD W + + Y
Sbjct: 482 TGYSFVRCKLTGVGVSTSILGRPWEPYSRVVFALTYMSAAVSPRGWDDWNHTANQRTAFY 303
Score = 51.9 bits (107), Expect(4) = 9e-025
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1 / -1
Query: 688 HYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSI 828
HY+ GC I G DFI G GR+ +E C + S TAQ+R+ +
Sbjct: 629 HYYCGCYIEGGTDFICGNGRALFEKCHLHSTSPNGGAFTAQKRASEL 489
Score = 35.0 bits (70), Expect(4) = 9e-025
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1 / -1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPPP 1170
G AK RV WA +L+ +A PF+ ++ G W+ P
Sbjct: 284 GQGAKTDGRVKWARNLSPIEAAPFMTKAWIGGQQWLPKQP 165
Score = 25.4 bits (49), Expect(4) = 9e-025
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +1 / -1
Query: 1021 YYGEFKCFGPGA 1056
+YG+++C+G GA
Sbjct: 308 FYGQYQCYGQGA 273
>gb|AL828870.1|AL828870 AL828870 q:141 Triticum aestivum cDNA clone E07_q141_plate_11, mRNA
sequence
Length = 606
Score = 83.1 bits (175), Expect(3) = 1e-024
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +1 / +2
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QA+AVR+ G + Y C+ QDTL D G HY+ GC I G DFI G GR+ +E C +
Sbjct: 86 QAIAVRVAGDRAAFYGCSFSSFQDTLLDDNGRHYYCGCYIEGGTDFICGNGRALFEKCHL 265
Query: 772 ESVVKEVAVLTAQQRS 819
S TAQ+R+
Sbjct: 266 HSTSLTGGAFTAQKRA 313
Score = 39.6 bits (80), Expect(3) = 1e-024
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1 / +2
Query: 844 TGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKM 954
TG+SF C + GV LGR W SRVV++ T M
Sbjct: 329 TGYSFVRCKLTGVGVSTSILGRPWEPYSRVVFALTYM 439
Score = 29.9 bits (59), Expect(3) = 1e-024
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPPP 1170
G AK RV WA +L+ +A PF+ ++ W+ P
Sbjct: 480 GQWAKTDCRVKWARNLSPTEAAPFMTEAWIDRQQWLPKQP 599
>gb|BJ309363.1|BJ309363 BJ309363 Y. Ogihara unpublished cDNA library, Wh_yd Triticum aestivum
cDNA clone whyd19m22 3', mRNA sequence
Length = 661
Score = 69.8 bits (146), Expect(4) = 2e-023
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1 / -2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADA 1062
G +Y GRA G SR+VY+YT + P GWD W +S ++G +K +GPGADA
Sbjct: 513 GMLYAGRAMGQYSRIVYAYTYFDNVIAPGGWDDWDHNSNKSMTAFFGMYKNWGPGADA 340
Score = 40.5 bits (82), Expect(4) = 2e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / -3
Query: 682 GLHYFKGCLIRGSVDFIFGFG 744
G HYF+ C I GS+DFIFG G
Sbjct: 626 GRHYFRDCYIEGSIDFIFGRG 564
Score = 32.2 bits (64), Expect(4) = 2e-023
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1 / -2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQP 1164
G A V WA +L A+PF+G +V G W+ P
Sbjct: 357 GPGADAVHGVPWARELDYFTARPFLGKSFVNGFHWLTP 244
Score = 22.6 bits (43), Expect(4) = 2e-023
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -2
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 552 TGFAFVNCRVTG 517
>gb|BJ235223.1|BJ235223 BJ235223 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe15k14 5', mRNA sequence
Length = 582
Score = 81.7 bits (172), Expect(3) = 1e-021
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +1 / +1
Query: 595 AVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIE 774
A+A R+ G + Y C+ QDTL D G HY+ GC I G DFI G GR+ +E C +
Sbjct: 289 AIAARVMGDRAAFYGCSFSSFQDTLLDDNGRHYYCGCYIEGGTDFICGNGRALFEKCHLH 468
Query: 775 SVVKEVAVLTAQQRSKSI 828
S TAQ+R+ +
Sbjct: 469 STSPNGGAFTAQKRASEL 522
Score = 35.4 bits (71), Expect(3) = 1e-021
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1 / +1
Query: 259 SGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
SGKGDY I A+ P +++ R ++ +KPG
Sbjct: 1 SGKGDYRKIHEAIAAAPANSSARTVILIKPG 93
Score = 29.5 bits (58), Expect(3) = 1e-021
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWND 447
+REK+ + + KP IT V+ WN+
Sbjct: 97 YREKIVVPVDKPNITLFGTSANTTVITWNE 186
>gb|BQ806531.1|BQ806531 WHE3580_B06_C12ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3580_B06_C12, mRNA sequence
Length = 704
Score = 77.1 bits (162), Expect(3) = 2e-021
Identities = 30/71 (42%), Positives = 38/71 (53%)
Frame = +1 / +2
Query: 595 AVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIE 774
A+AVR+ G + Y C+ QDTL D G HY+ GC I G DFI G GR+ +E C +
Sbjct: 491 AIAVRVMGDRAAFYGCSFSSFQDTLLDDNGRHYYCGCYIEGGTDFICGNGRALFEKCHLH 670
Query: 775 SVVKEVAVLTA 807
S TA
Sbjct: 671 STSPNGGAFTA 703
Score = 39.6 bits (80), Expect(3) = 2e-021
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1 / +2
Query: 250 VDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VD SGKGDY I A+ P +++ R ++ +KPG
Sbjct: 194 VDQSGKGDYRKIHEAIAAAPANSSARTVILIKPG 295
Score = 29.5 bits (58), Expect(3) = 2e-021
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWND 447
+REK+ + + KP IT V+ WN+
Sbjct: 299 YREKIVVPVDKPNITLFGTSANTTVITWNE 388
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 960,014,688
Number of Sequences: 636343
Number of extensions: 16038108
Number of successful extensions: 176565
Number of sequences better than 1.0e-020: 17
length of database: 122,413,413
effective HSP length: 55
effective length of database: 87,414,548
effective search space used: 33304942788
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)