TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: L... 174 1e-042
gb|CV763657.1|CV763657 FGAS058040 Triticum aestivum FGAS: L... 138 8e-032
gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestiv... 102 5e-029
gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA... 122 9e-029
gb|CF133075.1|CF133075 WHE4353_G03_N05ZT Wheat meiotic flor... 101 1e-026
gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA... 62 1e-025
gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivu... 102 6e-021
>gb|CV778342.1|CV778342 FGAS072750 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 829
Score = 174 bits (375), Expect = 1e-042
Identities = 67/112 (59%), Positives = 79/112 (70%)
Frame = +1 / +3
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC DW +R+R+A C GFGR GG GKIY+VTD +DDD NPR G
Sbjct: 405 CMATNPIDRCWRCRQDWATDRQRMARCAKGFGRETTGGLKGKIYIVTDANDDDFTNPRPG 584
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACIT 714
TLR+ + EPLWIIF RDMVI +E+I+ S KTIDGRGA VH+ANG +T
Sbjct: 585 TLRWGAVQTEPLWIIFARDMVINASQEIIIQSDKTIDGRGAQVHVANGGGVT 740
>gb|CV763657.1|CV763657 FGAS058040 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 853
Score = 138 bits (296), Expect = 8e-032
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +1 / +2
Query: 334 SINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGR 495
SI N TARRNLGYLSCGTGNPIDDCWRCDSDWHNNR+RLADCGIGFGRNAIGGR
Sbjct: 377 SIRNSTARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGR 538
Score = 120 bits (256), Expect = 3e-026
Identities = 48/55 (87%), Positives = 51/55 (92%)
Frame = -2 / -2
Query: 494 RPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLMDL 330
RPPMALRPKPMPQSARR RLLCQSESQRQQSSMG PVPHDRYPRF RAV+ L+D+
Sbjct: 537 RPPMALRPKPMPQSARRCRLLCQSESQRQQSSMGFPVPHDRYPRFLRAVLFLIDM 373
>gb|CA741910.1|CA741910 wia1c.pk002.i8 wia1c Triticum aestivum cDNA clone wia1c.pk002.i8 5'
end, mRNA sequence
Length = 560
Score = 102 bits (218), Expect(2) = 5e-029
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = +1 / +2
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC DW +R+R+A C GFGR GG GKIY+VTD +DDD NPR G
Sbjct: 257 CMATNPIDRCWRCRKDWATDRQRMARCAKGFGRETTGGLKGKIYIVTDANDDDFTNPRPG 436
Query: 559 TLRY 570
TLR+
Sbjct: 437 TLRW 448
Score = 46.0 bits (94), Expect(2) = 5e-029
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +1 / +3
Query: 577 IHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGA 681
+ EPLWIIF RDMVI +I+ KTI RGA
Sbjct: 456 VQXEPLWIIFARDMVINASXXIIIQXDKTIXXRGA 560
>gb|AL809287.1|AL809287 AL809287 a:11 Triticum aestivum cDNA clone B01_a11_plate_16, mRNA
sequence
Length = 240
Score = 122 bits (260), Expect(2) = 9e-029
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = +1 / +2
Query: 502 KIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGR 675
KIYVVTD DDDPVNP+KGTLR+AVI +EPLWI+FKRDMVITL +ELI+NSFKTIDGR
Sbjct: 65 KIYVVTDAGDDDPVNPKKGTLRHAVIQDEPLWIVFKRDMVITLSQELIVNSFKTIDGR 238
Score = 103 bits (219), Expect(2) = 4e-023
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = -1 / -3
Query: 675 ASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIARVGDHVDL 502
A VDGLEAVHDELL E DDHV LEDDP+RL +DDGV +GAL V VV+ARVGDHVDL
Sbjct: 238 APVDGLEAVHDELLAECDDHVALEDDPQRLVLDDGVPQGALLGVHGVVVARVGDHVDL 65
Score = 25.4 bits (49), Expect(2) = 4e-023
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 488 PMALRPKPM 462
PMALRPKPM
Sbjct: 48 PMALRPKPM 22
Score = 25.4 bits (49), Expect(2) = 9e-029
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 462 HRLWPQRHRR 491
HRL PQRHRR
Sbjct: 22 HRLRPQRHRR 51
>gb|CF133075.1|CF133075 WHE4353_G03_N05ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4353_G03_N05, mRNA sequence
Length = 670
Score = 101 bits (215), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 421 SDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEP 591
+DW +R+RLADCGIGFGRNA+GG+ G YVVTD SD DPVNP GTLR+A I E P
Sbjct: 499 TDWWKDRQRLADCGIGFGRNALGGKGGPFYVVTDSSDRDPVNPAPGTLRHAAIQEGP 669
Score = 39.6 bits (80), Expect(2) = 1e-026
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 379 CGTGNPIDDCWRC 417
C TGNPIDDCWRC
Sbjct: 454 CMTGNPIDDCWRC 492
>gb|AL810355.1|AL810355 AL810355 e:29 Triticum aestivum cDNA clone D07_e29_plate_1, mRNA
sequence
Length = 688
Score = 61.6 bits (128), Expect(3) = 1e-025
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 508 YVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDM 618
YVVTD SDD+ + P+KGTLR+ VI + PLWI+F R M
Sbjct: 1 YVVTDLSDDELIVPKKGTLRFGVIQDRPLWIVFGRSM 111
Score = 48.7 bits (100), Expect(3) = 1e-025
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1 / +2
Query: 700 GACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GA +T+Q + +VIIH +HIH P M+R S HYG R
Sbjct: 191 GAQMTLQGVRHVIIHNVHIHHSVPHSGGMIRDSKHHYGRR 310
Score = 44.6 bits (91), Expect(3) = 1e-025
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +1 / +2
Query: 619 VITLKEELIMNSFKTIDGRGANVHI 693
VI L +ELI+NS KTIDGRGA VHI
Sbjct: 113 VIRLSQELIVNSNKTIDGRGAQVHI 187
>gb|CD938589.1|CD938589 OV.110G14F010312 OV Triticum aestivum cDNA clone OV110G14, mRNA
sequence
Length = 708
Score = 102 bits (217), Expect = 6e-021
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = +1 / +2
Query: 703 ACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
ACITIQY+TNVIIHGLHIHDC+PTGNAMVRSSPSHYGWR
Sbjct: 2 ACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWR 118
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 672,129,815
Number of Sequences: 636343
Number of extensions: 9313233
Number of successful extensions: 107535
Number of sequences better than 1.0e-020: 10
length of database: 122,413,413
effective HSP length: 54
effective length of database: 88,050,891
effective search space used: 19195094238
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)