TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF202852.1|BF202852 WHE1782_D10_G19ZS Wheat pre-anthesis... 147 7e-035
gb|BQ842129.1|BQ842129 WHE2989_C06_F11ZS Wheat dormant embr... 147 7e-035
gb|BE516429.1|BE516429 WHE610_E07_I14ZA Wheat ABA-treated e... 146 1e-034
gb|CD896827.1|CD896827 G174.104B11F010823 G174 Triticum aes... 146 1e-034
gb|CK216601.1|CK216601 FGAS028597 Triticum aestivum FGAS: L... 146 1e-034
gb|AJ613703.1|AJ613703 AJ613703 Triticum turgidum subsp. du... 146 1e-034
gb|DR737871.1|DR737871 FGAS083088 Triticum aestivum FGAS: L... 146 1e-034
gb|BE490807.1|BE490807 WHE0368_B12_C24ZS Wheat cold-stresse... 145 3e-034
gb|BQ789054.1|BQ789054 WHE4157_A06_B11ZS Wheat CS whole pla... 145 3e-034
gb|CA642774.1|CA642774 wre1n.pk0059.g12 wre1n Triticum aest... 145 3e-034
gb|DR739258.1|DR739258 FGAS084475 Triticum aestivum FGAS: L... 145 3e-034
gb|BQ801745.1|BQ801745 WHE2818_A11_A22ZS Triticum monococcu... 141 5e-033
gb|BQ487493.1|BQ487493 WHE2479_G08_M15ZY Triticum monococcu... 141 1e-032
gb|BQ161231.1|BQ161231 WHE0368_B12_C24ZT Wheat cold-stresse... 139 2e-032
gb|AJ612043.1|AJ612043 AJ612043 Triticum turgidum subsp. du... 122 2e-027
gb|BE518408.1|BE518408 WHE0815_E03_J05ZS Wheat vernalized c... 120 1e-026
gb|BQ166128.1|BQ166128 WHE0815_E03_J05ZT Wheat vernalized c... 120 1e-026
gb|CA610732.1|CA610732 wr1.pk0123.e7 wr1 Triticum aestivum ... 120 1e-026
gb|CA648410.1|CA648410 wre1n.pk0128.b5 wre1n Triticum aesti... 120 1e-026
gb|CV781297.1|CV781297 FGAS075708 Triticum aestivum FGAS: L... 116 1e-025
gb|BU100768.1|BU100768 WHE3357_D07_H13ZS Chinese Spring alu... 115 3e-025
gb|BG607445.1|BG607445 WHE2479_G08_M15ZS Triticum monococcu... 112 2e-024
gb|BG906891.1|BG906891 TaLr1155A02R TaLr1 Triticum aestivum... 110 1e-023
gb|CA649612.1|CA649612 wre1n.pk0149.c1 wre1n Triticum aesti... 105 2e-022
>gb|BF202852.1|BF202852 WHE1782_D10_G19ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1782_D10_G19, mRNA sequence
Length = 703
Score = 147 bits (315), Expect = 7e-035
Identities = 55/62 (88%), Positives = 61/62 (98%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+TFV++
Sbjct: 450 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVTFVID 629
Query: 182 D* 187
D*
Sbjct: 630 D* 635
>gb|BQ842129.1|BQ842129 WHE2989_C06_F11ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2989_C06_F11, mRNA sequence
Length = 759
Score = 147 bits (315), Expect = 7e-035
Identities = 55/62 (88%), Positives = 61/62 (98%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+TFV++
Sbjct: 504 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVTFVID 683
Query: 182 D* 187
D*
Sbjct: 684 D* 689
>gb|BE516429.1|BE516429 WHE610_E07_I14ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE610_E07_I14, mRNA sequence
Length = 505
Score = 146 bits (314), Expect = 1e-034
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2 / -1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV+E
Sbjct: 367 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIE 188
Query: 182 D*K 190
D*+
Sbjct: 187 D*E 179
>gb|CD896827.1|CD896827 G174.104B11F010823 G174 Triticum aestivum cDNA clone G174104B11,
mRNA sequence
Length = 460
Score = 146 bits (314), Expect = 1e-034
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV+E
Sbjct: 73 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIE 252
Query: 182 D*K 190
D*+
Sbjct: 253 D*E 261
>gb|CK216601.1|CK216601 FGAS028597 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1035
Score = 146 bits (314), Expect = 1e-034
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2 / -1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV+E
Sbjct: 432 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIE 253
Query: 182 D*K 190
D*+
Sbjct: 252 D*E 244
>gb|AJ613703.1|AJ613703 AJ613703 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 09109R, mRNA
sequence
Length = 586
Score = 146 bits (314), Expect = 1e-034
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV+E
Sbjct: 255 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIE 434
Query: 182 D*K 190
D*+
Sbjct: 435 D*E 443
>gb|DR737871.1|DR737871 FGAS083088 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1153
Score = 146 bits (314), Expect = 1e-034
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2 / +2
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV+E
Sbjct: 629 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIE 808
Query: 182 D*K 190
D*+
Sbjct: 809 D*E 817
>gb|BE490807.1|BE490807 WHE0368_B12_C24ZS Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0368_B12_C24, mRNA
sequence
Length = 526
Score = 145 bits (311), Expect = 3e-034
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTNVVDHTTH+FKK DG+TFV+E
Sbjct: 181 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHYFKKQDGVTFVIE 360
Query: 182 D* 187
D*
Sbjct: 361 D* 366
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = -3 / -2
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL HK Y ++ LE+V G+INN+GVAQ Q+IEI+GV LEQRPG+PGP VQLEKLG R+PE
Sbjct: 363 VLDHKGYAVLLLEVVRGVINNIGVAQLQVIEIHGVCLEQRPGVPGPGVQLEKLGTRDPED 184
Query: 4 A 2
A
Sbjct: 183 A 181
Score = 24.0 bits (46), Expect(2) = 1e-022
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2 / -2
Query: 332 NKARYTSLNKDLRCAFLHDTLHVGCSL 252
++AR S+ +R AF+H + V CS+
Sbjct: 447 DRARTASVRHTVR*AFVHRSWSVTCSV 367
>gb|BQ789054.1|BQ789054 WHE4157_A06_B11ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4157_A06_B11, mRNA sequence
Length = 752
Score = 145 bits (311), Expect = 3e-034
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +2 / +2
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTNVVDHTTH+FKK DG+TFV+E
Sbjct: 440 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHYFKKQDGVTFVIE 619
Query: 182 D* 187
D*
Sbjct: 620 D* 625
Score = 101 bits (216), Expect = 3e-021
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = -3 / -2
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL HK Y ++ LE+V G+INN+GVAQ Q+IEI+GV LEQRPG+PGP VQLEKLG R+PE
Sbjct: 622 VLDHKGYAVLLLEVVRGVINNIGVAQLQVIEIHGVCLEQRPGVPGPGVQLEKLGTRDPED 443
Query: 4 A 2
A
Sbjct: 442 A 440
>gb|CA642774.1|CA642774 wre1n.pk0059.g12 wre1n Triticum aestivum cDNA clone
wre1n.pk0059.g12 5' end, mRNA sequence
Length = 403
Score = 145 bits (311), Expect = 3e-034
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTNVVDHTTH+FKK DG+TFV+E
Sbjct: 16 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHYFKKQDGVTFVIE 195
Query: 182 D* 187
D*
Sbjct: 196 D* 201
Score = 101 bits (216), Expect(2) = 7e-023
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = -3 / -2
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL HK Y ++ LE+V G+INN+GVAQ Q+IEI+GV LEQRPG+PGP VQLEKLG R+PE
Sbjct: 198 VLDHKGYAVLLLEVVRGVINNIGVAQLQVIEIHGVCLEQRPGVPGPGVQLEKLGTRDPED 19
Query: 4 A 2
A
Sbjct: 18 A 16
Score = 24.0 bits (46), Expect(2) = 7e-023
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2 / -2
Query: 332 NKARYTSLNKDLRCAFLHDTLHVGCSL 252
++AR S+ +R AF+H + V CS+
Sbjct: 282 DRARTASVRHTVR*AFVHRSWSVTCSV 202
>gb|DR739258.1|DR739258 FGAS084475 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1090
Score = 145 bits (311), Expect = 3e-034
Identities = 54/63 (85%), Positives = 61/63 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKKHDG+ FV++
Sbjct: 679 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKHDGVAFVIQ 858
Query: 182 D*K 190
D*+
Sbjct: 859 D*E 867
>gb|BQ801745.1|BQ801745 WHE2818_A11_A22ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2818_A11_A22, mRNA
sequence
Length = 727
Score = 141 bits (302), Expect = 5e-033
Identities = 53/62 (85%), Positives = 59/62 (95%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKK DG+ FV++
Sbjct: 456 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKRDGVAFVID 635
Query: 182 D* 187
D*
Sbjct: 636 D* 641
>gb|BQ487493.1|BQ487493 WHE2479_G08_M15ZY Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2479_G08_M15,
mRNA sequence
Length = 508
Score = 141 bits (302), Expect(2) = 1e-032
Identities = 53/62 (85%), Positives = 59/62 (95%)
Frame = +2 / -3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTTH+FKK DG+ FV++
Sbjct: 338 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTTHYFKKRDGVAFVID 159
Query: 182 D* 187
D*
Sbjct: 158 D* 153
Score = 18.0 bits (33), Expect(2) = 1e-032
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +3 / -3
Query: 288 CASEVLVQTCVS 323
CAS L C+S
Sbjct: 116 CASRTLFMPCLS 81
>gb|BQ161231.1|BQ161231 WHE0368_B12_C24ZT Wheat cold-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0368_B12_C24, mRNA
sequence
Length = 534
Score = 139 bits (298), Expect = 2e-032
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +2 / -1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRV GPKF KL+ GTWHAGPLFKADAVDFYNLE+SNTNVVDHTTH+FKK DG+TFV+E
Sbjct: 384 CVFRVFGPKFFKLHAGTWHAGPLFKADAVDFYNLEVSNTNVVDHTTHYFKKQDGVTFVIE 205
Query: 182 D* 187
D*
Sbjct: 204 D* 199
>gb|AJ612043.1|AJ612043 AJ612043 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 06057R, mRNA
sequence
Length = 610
Score = 122 bits (261), Expect = 2e-027
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV GPKFLKL+ GTWHAGPLFK D +DFYNLELSNTN VD TT++FKK DG+TFV+E+
Sbjct: 270 VFRVPGPKFLKLHAGTWHAGPLFKGDTLDFYNLELSNTNDVDRTTYYFKKQDGVTFVIEE 449
Query: 185 * 187
*
Sbjct: 450 * 452
>gb|BE518408.1|BE518408 WHE0815_E03_J05ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0815_E03_J05, mRNA sequence
Length = 421
Score = 120 bits (256), Expect = 1e-026
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+E+
Sbjct: 103 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVIEE 282
Query: 185 * 187
*
Sbjct: 283 * 285
>gb|BQ166128.1|BQ166128 WHE0815_E03_J05ZT Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0815_E03_J05, mRNA sequence
Length = 490
Score = 120 bits (256), Expect = 1e-026
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+E+
Sbjct: 394 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVIEE 215
Query: 185 * 187
*
Sbjct: 214 * 212
>gb|CA610732.1|CA610732 wr1.pk0123.e7 wr1 Triticum aestivum cDNA clone wr1.pk0123.e7 5'
end, mRNA sequence
Length = 421
Score = 120 bits (256), Expect = 1e-026
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+E+
Sbjct: 22 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVIEE 201
Query: 185 * 187
*
Sbjct: 202 * 204
>gb|CA648410.1|CA648410 wre1n.pk0128.b5 wre1n Triticum aestivum cDNA clone wre1n.pk0128.b5
5' end, mRNA sequence
Length = 463
Score = 120 bits (256), Expect = 1e-026
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+E+
Sbjct: 94 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVIEE 273
Query: 185 * 187
*
Sbjct: 274 * 276
>gb|CV781297.1|CV781297 FGAS075708 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 832
Score = 116 bits (248), Expect = 1e-025
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVV 178
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+
Sbjct: 582 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVI 755
>gb|BU100768.1|BU100768 WHE3357_D07_H13ZS Chinese Spring aluminum-stressed root tip cDNA
library Triticum aestivum cDNA clone WHE3357_D07_H13,
mRNA sequence
Length = 643
Score = 115 bits (245), Expect = 3e-025
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK D +TFV+++
Sbjct: 453 VFRVPGAKFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDRVTFVIQE 632
Query: 185 * 187
*
Sbjct: 633 * 635
>gb|BG607445.1|BG607445 WHE2479_G08_M15ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2479_G08_M15,
mRNA sequence
Length = 458
Score = 112 bits (239), Expect = 2e-024
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTT 139
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHTT
Sbjct: 319 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHTT 456
>gb|BG906891.1|BG906891 TaLr1155A02R TaLr1 Triticum aestivum cDNA clone TaLr1155A02 5',
mRNA sequence
Length = 597
Score = 110 bits (234), Expect = 1e-023
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHT 136
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELSNTN+VDHT
Sbjct: 463 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSNTNIVDHT 597
>gb|CA649612.1|CA649612 wre1n.pk0149.c1 wre1n Triticum aestivum cDNA clone wre1n.pk0149.c1
5' end, mRNA sequence
Length = 295
Score = 105 bits (225), Expect = 2e-022
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +2 / +1
Query: 26 KFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVV 178
KFLKL+ GTWHAGPLFKADA+DFYNLELS+TN VD TT++FKK DG+TFV+
Sbjct: 4 KFLKLHAGTWHAGPLFKADALDFYNLELSDTNDVDRTTYYFKKQDGVTFVI 156
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 451,536,566
Number of Sequences: 636343
Number of extensions: 6921122
Number of successful extensions: 281672
Number of sequences better than 1.0e-020: 29
length of database: 122,413,413
effective HSP length: 51
effective length of database: 89,959,920
effective search space used: 7826513040
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)