TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA605480.1|CA605480 wr1.pk0054.h3 wr1 Triticum aestivum ... 283 4e-076
emb|AX756363.1| Sequence 1102 from Patent WO03000905 168 9e-065
gb|CD871511.1|CD871511 AZO2.118G16F010207 AZO2 Triticum aes... 127 7e-047
gb|CD374060.1|CD374060 WHE2627_D08_H15ZT Sumai3 Wheat Fusar... 168 3e-045
gb|CD871512.1|CD871512 AZO2.118G16R010404 AZO2 Triticum aes... 127 4e-040
gb|BE424923.1|BE424923 WHE0090_B03_D06ZS Wheat endosperm cD... 164 1e-039
gb|BE419823.1|BE419823 WWS017.H11R000101 ITEC WWS Wheat Scu... 127 3e-037
gb|BE422750.1|BE422750 WHE0058_C07_F14ZS Wheat endosperm cD... 147 1e-034
gb|BE425025.1|BE425025 WHE0082_B01_D02ZS Wheat endosperm cD... 144 1e-033
gb|CA637912.1|CA637912 wre1n.pk0005.d11 wre1n Triticum aest... 127 1e-028
gb|BQ167516.1|BQ167516 WHE0074_D03_H06ZK Cheyenne wheat end... 123 2e-027
gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing g... 62 3e-022
gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spi... 68 3e-022
gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spi... 68 4e-022
gb|CD898128.1|CD898128 G174.108C22F010821 G174 Triticum aes... 103 2e-021
>gb|CA605480.1|CA605480 wr1.pk0054.h3 wr1 Triticum aestivum cDNA clone wr1.pk0054.h3 5'
end, mRNA sequence
Length = 458
Score = 283 bits (612), Expect(2) = 4e-076
Identities = 114/124 (91%), Positives = 115/124 (92%)
Frame = -2 / +3
Query: 426 NXXXXXXXXAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVL 247
N AETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVL
Sbjct: 24 NAALGGAGLAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVL 203
Query: 246 RAYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSFACWLLL 67
RAYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSFACWLLL
Sbjct: 204 RAYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSFACWLLL 383
Query: 66 FGLQ 55
GL+
Sbjct: 384 SGLK 395
Score = 269 bits (582), Expect = 2e-071
Identities = 114/128 (89%), Positives = 115/128 (89%)
Frame = +2 / -2
Query: 59 SPKRSNQHAKLFVREMHARDG*TV**QPEIHVDQLVTAFAG*SNGSGCTSSLSELACLKP 238
SP+RSNQHAKLFVREMHARDG*TV**QPEIHVDQLVTAFAG*SNGSGCTSSLSELAC KP
Sbjct: 391 SPERSNQHAKLFVREMHARDG*TV**QPEIHVDQLVTAFAG*SNGSGCTSSLSELACRKP 212
Query: 239 YALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*HPVKCVTNGRRHPCTXXXXXXXXXX 418
YALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*HPVKCVTNGRRHPCT
Sbjct: 211 YALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*HPVKCVTNGRRHPCTPVSASPAPPR 32
Query: 419 XXFLATAY 442
FLATAY
Sbjct: 31 AAFLATAY 8
Score = 259 bits (560), Expect = 3e-068
Identities = 105/127 (82%), Positives = 107/127 (84%)
Frame = +1 / -1
Query: 55 LKSKKEQPACKAVCTRDACKGRIDSIITTGNSRRSASHCLCRVIERQWLHVVTERTGVPE 234
L+S+KEQPACKAVCTRDACKGRIDSIITTGNSRRSASHCLCRVIERQWLHVVTERTGVPE
Sbjct: 395 LESRKEQPACKAVCTRDACKGRIDSIITTGNSRRSASHCLCRVIERQWLHVVTERTGVPE 216
Query: 235 TVRPQHLVVGEXXXXXXXXXXXXXXXXXXXXPTARLTPREVRHERAAPPVHPGLRQPGPA 414
TVRPQHLVVGE PTARLTPREVRHERAAPPVHPGLRQPGPA
Sbjct: 215 TVRPQHLVVGEVERAAHALVAAVPGVVLVALPTARLTPREVRHERAAPPVHPGLRQPGPA 36
Query: 415 QGGVPCH 435
QGGVPCH
Sbjct: 35 QGGVPCH 15
Score = 211 bits (455), Expect = 8e-054
Identities = 90/103 (87%), Positives = 90/103 (87%)
Frame = -1 / +2
Query: 367 VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGVXXXXXXXXXXXXXATAV 188
VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGV ATAV
Sbjct: 83 VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGVRFPARQFAQ*RRAATAV 262
Query: 187 RLPCKGSD*LIDVNFRLLLYCLSVPCMHLAYKQLCMLVAPFWT 59
RLPCKGSD*LIDVNFRLLLYCLSVPCMHLAYKQLCMLVAPFWT
Sbjct: 263 RLPCKGSD*LIDVNFRLLLYCLSVPCMHLAYKQLCMLVAPFWT 391
Score = 185 bits (399), Expect = 4e-046
Identities = 83/109 (76%), Positives = 83/109 (76%)
Frame = -3 / +1
Query: 386 CTGGAARS*RTSRGVSRXXXXXXXXXXXXXXXXXXXXXXXXXXTRC*GRTVSGTPVRSVT 207
CTGGAARS*RTSRGVSR TRC*GRTVSGTPVRSVT
Sbjct: 64 CTGGAARS*RTSRGVSRAVGSATSTTPGTAATRACAARSTSPTTRC*GRTVSGTPVRSVT 243
Query: 206 TCSHCRSITLQRQ*LADRREFPVVIILSIRPLHASRVQTALHAGCSFLD 60
TCSHCRSITLQRQ*LADRREFPVVIILSIRPLHASRVQTALHAGCSFLD
Sbjct: 244 TCSHCRSITLQRQ*LADRREFPVVIILSIRPLHASRVQTALHAGCSFLD 390
Score = 110 bits (235), Expect(2) = 3e-035
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3 / -3
Query: 60 VQKGATSMQSCLYARCMQGTDRQYNNNRKFTSIS*SLPLQGNRTAV 197
VQKGATSMQSCLYARCMQGTDRQYNNNRKFTSIS*SLPLQGNRTAV
Sbjct: 390 VQKGATSMQSCLYARCMQGTDRQYNNNRKFTSIS*SLPLQGNRTAV 253
Score = 58.8 bits (122), Expect(2) = 3e-035
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +3 / -3
Query: 300 CPRSSARCAAHCTADTP*SASRT 368
CPRSSARCAAHCTADTP*SASRT
Sbjct: 150 CPRSSARCAAHCTADTP*SASRT 82
Score = 23.1 bits (44), Expect(2) = 4e-076
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / +2
Query: 31 LQYNESCYKK 2
LQ+NESCY +
Sbjct: 416 LQFNESCYNQ 445
>emb|AX756363.1| Sequence 1102 from Patent WO03000905
Length = 1030
Score = 168 bits (361), Expect(2) = 9e-065
Identities = 64/76 (84%), Positives = 66/76 (86%)
Frame = -2 / +2
Query: 396 ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASS 217
E+GV GWRRPFVTHFTGCQPCSG RN YSGDSC GMRRALNFADDQVLR YGFRHA
Sbjct: 602 ESGVRGWRRPFVTHFTGCQPCSGDRNRDYSGDSCGDGMRRALNFADDQVLRGYGFRHAGP 781
Query: 216 LSDDVQPLPFDYPAKA 169
LSDDV+PLPFDYPA A
Sbjct: 782 LSDDVRPLPFDYPAAA 829
Score = 118 bits (253), Expect(2) = 1e-051
Identities = 58/94 (61%), Positives = 60/94 (63%)
Frame = +2 / -2
Query: 158 QLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLH 337
Q + A AG*SNGSG TSSLS AC P LSTWSSAKLSARR+P QLSPE* R PL
Sbjct: 840 QRLPAAAG*SNGSGRTSSLSGPACRNP*PLSTWSSAKLSARRIPSPQLSPE*SRFRSPLQ 661
Query: 338 G*HPVKCVTNGRRHPCTXXXXXXXXXXXXFLATA 439
G HPVKCVTNGR HP T LA A
Sbjct: 660 GWHPVKCVTNGRLHPRTPLSASPAPASAASLAAA 559
Score = 105 bits (224), Expect(2) = 1e-051
Identities = 44/59 (74%), Positives = 46/59 (77%)
Frame = +1 / -1
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALLQQHVHERGLVV 651
QR RPPLH LVP R V EPPHDLHPVALEVV LQEHL PP AAL+ QHVH+R LVV
Sbjct: 517 QRRRRRPPLHGLVPRRDVAEPPHDLHPVALEVVVVLQEHLAPPRAALVLQHVHQRRLVV 341
Score = 100 bits (212), Expect(2) = 9e-065
Identities = 39/53 (73%), Positives = 45/53 (84%)
Frame = -2 / +2
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERR 493
DDQSALVYML +GS WR KVFLE+ YYF+GYW+EIVGRL ++ RYEAMERR
Sbjct: 341 DDQSALVYMLQHKGSPWRGKVFLENDYYFQGYWVEIVGRLGDIAARYEAMERR 499
Score = 85.4 bits (180), Expect(3) = 9e-035
Identities = 39/53 (73%), Positives = 41/53 (77%)
Frame = +2 / -2
Query: 494 RRSIASYLSVMLASRPTISIQ*PSK**PLSRNTLSRHRLPSCSSMYTSADWSS 652
RRS+ASY + M SRPTIS Q*P K** SRNTL RH LP C SMYTSADWSS
Sbjct: 498 RRSMASYRAAMSPSRPTISTQ*PWK**SFSRNTLPRHGLPLCCSMYTSADWSS 340
Score = 55.6 bits (115), Expect(3) = 9e-035
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = +1 / -1
Query: 97 TRDACKGRIDSIITTGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 267
T + K +++ + R SA VIERQ HVV ER GVPE V PQHLVVGE
Sbjct: 901 THSSTKTKLNRLAAAPPVRLSAPPGRRGVIERQRPHVVAERAGVPEPVAPQHLVVGE 731
Score = 45.1 bits (92), Expect(3) = 9e-035
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1 / -1
Query: 334 ARLTPREVRHERAAPPVHPGLRQPGPAQGGVP 429
A L PREVRHER PP H LR+P Q +P
Sbjct: 664 AGLAPREVRHERPPPPAHAALREPRARQRRLP 569
>gb|CD871511.1|CD871511 AZO2.118G16F010207 AZO2 Triticum aestivum cDNA clone AZO2118G16,
mRNA sequence
Length = 675
Score = 127 bits (272), Expect(2) = 7e-047
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = -2 / +1
Query: 378 WRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQ 199
WRRPFVTHFTGC PC G+ NE YS +SC +GMRRALN ADDQVLRAYGFRHA L DDV+
Sbjct: 472 WRRPFVTHFTGCNPCGGRPNEIYSNESCAEGMRRALNLADDQVLRAYGFRHAGPLKDDVR 651
Query: 198 PL 193
PL
Sbjct: 652 PL 657
Score = 83.1 bits (175), Expect(2) = 7e-047
Identities = 32/57 (56%), Positives = 41/57 (71%)
Frame = -2 / +1
Query: 657 RVDDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERRPG 487
RVDDQSAL Y+LL+ +W + +LE+ YYF+GYW EIV +L + ERY A ERR G
Sbjct: 175 RVDDQSALAYLLLKNPKKWGARTYLENQYYFQGYWAEIVDKLDGVAERYRAAERRFG 345
Score = 79.0 bits (166), Expect(2) = 5e-025
Identities = 40/61 (65%), Positives = 43/61 (70%)
Frame = +2 / -2
Query: 194 SGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*HPVKCVTNGR 373
SG TSSLS A P A STWSSA+LSARR+P +QLS E* SL P G PVKCVT GR
Sbjct: 656 SGRTSSLSGPAWRNP*ARSTWSSARLSARRIPSAQLSLE*ISLGLPPQGLQPVKCVTKGR 477
Query: 374 R 376
R
Sbjct: 476 R 474
Score = 58.3 bits (121), Expect(2) = 5e-025
Identities = 30/55 (54%), Positives = 34/55 (61%)
Frame = +1 / -1
Query: 493 PPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALLQQHVHERGLVVDS 657
PPL R VPLR E HDL PVALEVV L+ P +L+Q V +R LVVDS
Sbjct: 339 PPLRRPVPLRDAVELVHDLRPVALEVVLVLEVGPGAPFFGVLEQQVCQRRLVVDS 175
>gb|CD374060.1|CD374060 WHE2627_D08_H15ZT Sumai3 Wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
WHE2627_D08_H15, mRNA sequence
Length = 619
Score = 168 bits (361), Expect(2) = 3e-045
Identities = 64/76 (84%), Positives = 66/76 (86%)
Frame = -2 / -2
Query: 396 ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASS 217
E+GV GWRRPFVTHFTGCQPCSG RN YSGDSC GMRRALNFADDQVLR YGFRHA
Sbjct: 459 ESGVRGWRRPFVTHFTGCQPCSGDRNRDYSGDSCGDGMRRALNFADDQVLRGYGFRHAGP 280
Query: 216 LSDDVQPLPFDYPAKA 169
LSDDV+PLPFDYPA A
Sbjct: 279 LSDDVRPLPFDYPAAA 232
Score = 118 bits (253), Expect(2) = 1e-033
Identities = 58/94 (61%), Positives = 60/94 (63%)
Frame = +2 / +2
Query: 158 QLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLH 337
Q + A AG*SNGSG TSSLS AC P LSTWSSAKLSARR+P QLSPE* R PL
Sbjct: 221 QRLPAAAG*SNGSGRTSSLSGPACRNP*PLSTWSSAKLSARRIPSPQLSPE*SRFRSPLQ 400
Query: 338 G*HPVKCVTNGRRHPCTXXXXXXXXXXXXFLATA 439
G HPVKCVTNGR HP T LA A
Sbjct: 401 GWHPVKCVTNGRLHPRTPLSASPAPASAASLAAA 502
Score = 45.5 bits (93), Expect(2) = 1e-033
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDL 549
QR RPPLH LVP R V EPPHDL
Sbjct: 544 QRRRRRPPLHGLVPRRDVAEPPHDL 618
Score = 35.0 bits (70), Expect(2) = 3e-045
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 549 EIVGRLANMTERYEAMERR 493
EIVGRL ++ RYEAMERR
Sbjct: 618 EIVGRLGDIAARYEAMERR 562
>gb|CD871512.1|CD871512 AZO2.118G16R010404 AZO2 Triticum aestivum cDNA clone AZO2118G16,
mRNA sequence
Length = 745
Score = 127 bits (272), Expect(2) = 4e-040
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = -2 / -3
Query: 378 WRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQ 199
WRRPFVTHFTGC PC G+ NE YS +SC +GMRRALN ADDQVLRAYGFRHA L DDV+
Sbjct: 428 WRRPFVTHFTGCNPCGGRPNEIYSNESCAEGMRRALNLADDQVLRAYGFRHAGPLKDDVR 249
Query: 198 PL 193
PL
Sbjct: 248 PL 243
Score = 79.0 bits (166), Expect(2) = 7e-022
Identities = 40/61 (65%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 194 SGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*HPVKCVTNGR 373
SG TSSLS A P A STWSSA+LSARR+P +QLS E* SL P G PVKCVT GR
Sbjct: 244 SGRTSSLSGPAWRNP*ARSTWSSARLSARRIPSAQLSLE*ISLGLPPQGLQPVKCVTKGR 423
Query: 374 R 376
R
Sbjct: 424 R 426
Score = 60.6 bits (126), Expect(2) = 4e-040
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -2 / -3
Query: 627 MLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERRPG 487
+LL+ +W + +LE+ YYF+GYW EIV +L + ERY A ERR G
Sbjct: 695 LLLKNP*KWGARTYLENQYYFQGYWAEIVDKLDGVAERYRAAERRFG 555
Score = 47.8 bits (98), Expect(2) = 7e-022
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = +1 / +3
Query: 493 PPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALLQQHV 630
PPL R VPLR E HDL PVALEVV L+ P +L+Q V
Sbjct: 561 PPLRRPVPLRDAVELVHDLRPVALEVVLVLEVGPGAPFLGVLEQQV 698
>gb|BE424923.1|BE424923 WHE0090_B03_D06ZS Wheat endosperm cDNA library Triticum aestivum
cDNA clone WHE0090_B03_D06, mRNA sequence
Length = 562
Score = 164 bits (352), Expect = 1e-039
Identities = 63/76 (82%), Positives = 65/76 (85%)
Frame = -2 / -3
Query: 396 ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASS 217
E+GV GWRRPFVTHFTGCQPCSG YSGDSCD GMRRALNFADDQVLR YGFRHA
Sbjct: 428 ESGVRGWRRPFVTHFTGCQPCSGDWTRDYSGDSCDDGMRRALNFADDQVLRDYGFRHAGP 249
Query: 216 LSDDVQPLPFDYPAKA 169
LSDDV+PLPFDYPA A
Sbjct: 248 LSDDVRPLPFDYPAAA 201
Score = 126 bits (270), Expect = 3e-028
Identities = 61/101 (60%), Positives = 66/101 (65%)
Frame = +2 / +1
Query: 140 PEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CS 319
P + Q + A AG*SNGSG TSSLS AC P +LSTWSSAKLSARRMP SQLSPE*
Sbjct: 172 PRLFGCQRLPAAAG*SNGSGRTSSLSGPACRNP*SLSTWSSAKLSARRMPSSQLSPE*SR 351
Query: 320 LRCPLHG*HPVKCVTNGRRHPCTXXXXXXXXXXXXFLATAY 442
++ PL G HPVKCVTNGR HP T LA AY
Sbjct: 352 VQSPLQGWHPVKCVTNGRLHPRTPLSASPAPASAASLAAAY 474
>gb|BE419823.1|BE419823 WWS017.H11R000101 ITEC WWS Wheat Scutellum Library Triticum
aestivum cDNA clone WWS017.H11, mRNA sequence
Length = 578
Score = 127 bits (272), Expect(2) = 3e-037
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = -2 / +1
Query: 378 WRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQ 199
WRRPFVTHFTGC PC G+ NE YS +SC +GMRRALN ADDQVLRAYGFRHA L DDV+
Sbjct: 241 WRRPFVTHFTGCNPCGGRPNEIYSNESCAEGMRRALNLADDQVLRAYGFRHAGPLKDDVR 420
Query: 198 PL 193
PL
Sbjct: 421 PL 426
Score = 81.7 bits (172), Expect(2) = 1e-021
Identities = 44/70 (62%), Positives = 48/70 (68%)
Frame = +2 / -1
Query: 167 TAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLHG*H 346
TA + * SG TSSLS A KP A STWSSA+LSARR+P +QLS E* SL P G
Sbjct: 452 TARSV*QG*SGRTSSLSGPAWRKP*ARSTWSSARLSARRIPSAQLSLE*ISLGLPPQGLQ 273
Query: 347 PVKCVTNGRR 376
PVKCVT GRR
Sbjct: 272 PVKCVTKGRR 243
Score = 50.6 bits (104), Expect(2) = 3e-037
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2 / +1
Query: 588 FLESGYYFEGYWMEIVGRLANMTERYEAMERRPG 487
+LE+ YYF+GYW EIV +L + RY A ERR G
Sbjct: 13 YLENEYYFQGYWAEIVDKLDGVAARYRAAERRFG 114
Score = 42.3 bits (86), Expect(2) = 1e-021
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +1 / -3
Query: 481 GSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQ 585
G PPL R VP R E HDL PV+LEVV L+
Sbjct: 120 GRPEPPLRRPVPRRDAVELVHDLRPVSLEVVLVLE 16
>gb|BE422750.1|BE422750 WHE0058_C07_F14ZS Wheat endosperm cDNA library Triticum aestivum
cDNA clone WHE0058_C07_F14, mRNA sequence
Length = 399
Score = 147 bits (316), Expect = 1e-034
Identities = 57/66 (86%), Positives = 58/66 (87%)
Frame = -2 / -2
Query: 366 FVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQPLPF 187
FVTHFTGCQPCSG RN YSGDSCD GMRRALNFADDQVLR YGFRHA LSDDV+PLPF
Sbjct: 398 FVTHFTGCQPCSGDRNRDYSGDSCDDGMRRALNFADDQVLRDYGFRHAGPLSDDVRPLPF 219
Query: 186 DYPAKA 169
DYPA A
Sbjct: 218 DYPAAA 201
Score = 106 bits (227), Expect = 2e-022
Identities = 51/70 (72%), Positives = 53/70 (75%)
Frame = +2 / +1
Query: 158 QLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CSLRCPLH 337
Q + A AG*SNGSG TSSLS AC P +LSTWSSAKLSARRMP SQLSPE* R PL
Sbjct: 190 QRLPAAAG*SNGSGRTSSLSGPACRNP*SLSTWSSAKLSARRMPSSQLSPE*SRFRSPLQ 369
Query: 338 G*HPVKCVTN 367
G PVKCVTN
Sbjct: 370 GWQPVKCVTN 399
>gb|BE425025.1|BE425025 WHE0082_B01_D02ZS Wheat endosperm cDNA library Triticum aestivum
cDNA clone WHE0082_B01_D02, mRNA sequence
Length = 496
Score = 144 bits (308), Expect = 1e-033
Identities = 56/66 (84%), Positives = 57/66 (86%)
Frame = -2 / -2
Query: 366 FVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQPLPF 187
FVTHFTGCQPCSG N YSGDSCD GMRRALNFADDQVLR YGFRHA LSDDV+PLPF
Sbjct: 495 FVTHFTGCQPCSGDWNRDYSGDSCDDGMRRALNFADDQVLRDYGFRHAGPLSDDVRPLPF 316
Query: 186 DYPAKA 169
DYPA A
Sbjct: 315 DYPAAA 298
Score = 109 bits (233), Expect = 3e-023
Identities = 52/76 (68%), Positives = 56/76 (73%)
Frame = +2 / +2
Query: 140 PEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE*CS 319
P + Q + A AG*SNGSG TSSLS AC P +LSTWSSAKLSARRMP SQLSPE*
Sbjct: 269 PRLFGCQRLPAAAG*SNGSGRTSSLSGPACRNP*SLSTWSSAKLSARRMPSSQLSPE*SR 448
Query: 320 LRCPLHG*HPVKCVTN 367
+ PL G HPVKCVTN
Sbjct: 449 FQSPLQGWHPVKCVTN 496
>gb|CA637912.1|CA637912 wre1n.pk0005.d11 wre1n Triticum aestivum cDNA clone
wre1n.pk0005.d11 5' end, mRNA sequence
Length = 539
Score = 127 bits (272), Expect = 1e-028
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = -2 / +3
Query: 378 WRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQ 199
WRRPFVTHFTGC PC G+ NE YS +SC +GMRRALN ADDQVLRAYGFRHA L DDV+
Sbjct: 51 WRRPFVTHFTGCNPCGGRPNEIYSNESCAEGMRRALNLADDQVLRAYGFRHAGPLKDDVR 230
Query: 198 PL 193
PL
Sbjct: 231 PL 236
>gb|BQ167516.1|BQ167516 WHE0074_D03_H06ZK Cheyenne wheat endosperm cDNA library Triticum
aestivum cDNA clone WHE0074_D03_H06, mRNA sequence
Length = 465
Score = 123 bits (264), Expect = 2e-027
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = -2 / -2
Query: 378 WRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQ 199
WRRPFVTHFTGC PC G+ NE YS +SC +GMRRALN ADDQVLRAYGFRHA L DDV+
Sbjct: 386 WRRPFVTHFTGCNPCGGRPNEIYSNESCAEGMRRALNLADDQVLRAYGFRHAGPLKDDVR 207
Query: 198 PL 193
L
Sbjct: 206 AL 201
>gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3568_C05_E10, mRNA sequence
Length = 721
Score = 62.0 bits (129), Expect(3) = 3e-022
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = -2 / +2
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + +W DKV++E+ YY G+W +V + M E +
Sbjct: 35 DDQSALIHLLLSQKEKWMDKVYIENSYYLHGFWAGLVDKYEEMMENH 175
Score = 46.0 bits (94), Expect(3) = 3e-022
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -2 / +2
Query: 312 YSGDSCDQGMRRALNFADDQVLRAYGFRH 226
Y D C + M RA NFAD+QVLR YGF H
Sbjct: 254 YPVDRCLKSMERAFNFADNQVLRLYGFAH 340
Score = 35.4 bits (71), Expect(3) = 3e-022
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 390 GVHGWRRPFVTHFTGCQPC 334
G+ R PFVTHF GC+PC
Sbjct: 182 GLGDERWPFVTHFVGCKPC 238
>gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG022.A11, mRNA sequence
Length = 600
Score = 67.5 bits (141), Expect(3) = 3e-022
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -2 / +3
Query: 663 VSRVDDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYE 508
V DDQSA+VY+L + +W +KV+LE+GYY GYW +V R M E Y+
Sbjct: 240 VFEADDQSAMVYILATQREKWGNKVYLENGYYLHGYWGILVDRYEEMLENYQ 395
Score = 40.5 bits (82), Expect(3) = 3e-022
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2 / +3
Query: 312 YSGDSCDQGMRRALNFADDQVLRAYGFRHASSLS 211
Y + C + M RA NF D+QVL YGF H S S
Sbjct: 471 YPVERCLKQMDRAFNFGDNQVLHMYGFEHKSLAS 572
Score = 35.4 bits (71), Expect(3) = 3e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 396 ETGVHGWRRPFVTHFTGCQPCS 331
+ G+ R P VTHF GC+PCS
Sbjct: 393 QPGLGDHRWPLVTHFVGCKPCS 458
>gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG002.G09, mRNA sequence
Length = 989
Score = 67.5 bits (141), Expect(3) = 4e-022
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -2 / +3
Query: 663 VSRVDDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYE 508
V DDQSA+VY+L + +W +KV+LE+GYY GYW +V R M E Y+
Sbjct: 240 VFEADDQSAMVYILATQREKWGNKVYLENGYYLHGYWGILVDRYEEMLENYQ 395
Score = 40.0 bits (81), Expect(3) = 4e-022
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2 / +3
Query: 312 YSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
Y + C + M RA NF D+QVL YGF H S
Sbjct: 471 YPVERCLKQMDRAFNFGDNQVLHMYGFEHKS 563
Score = 35.4 bits (71), Expect(3) = 4e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 396 ETGVHGWRRPFVTHFTGCQPCS 331
+ G+ R P VTHF GC+PCS
Sbjct: 393 QPGLGDHRWPLVTHFVGCKPCS 458
>gb|CD898128.1|CD898128 G174.108C22F010821 G174 Triticum aestivum cDNA clone G174108C22,
mRNA sequence
Length = 608
Score = 103 bits (220), Expect = 2e-021
Identities = 42/59 (71%), Positives = 47/59 (79%)
Frame = +1 / -2
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALLQQHVHERGLVV 651
QR RPP+HRLVP R + +PPHDLHPVALEVV LQEHL PP AAL+ QHVH+R LVV
Sbjct: 580 QRHRRRPPIHRLVPRRDLAQPPHDLHPVALEVVVVLQEHLGPPRAALVLQHVHQRRLVV 404
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 643,390,528
Number of Sequences: 636343
Number of extensions: 9751617
Number of successful extensions: 119960
Number of sequences better than 1.0e-020: 18
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 16850574460
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)