TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA497356.1|CA497356 WHE3226_E01_I02ZT Wheat meiotic anth... 162 3e-039
gb|CD898344.1|CD898344 G174.108N06R011121 G174 Triticum aes... 162 3e-039
gb|CD898343.1|CD898343 G174.108N06F010821 G174 Triticum aes... 153 1e-036
gb|AL829970.1|AL829970 AL829970 q:343 Triticum aestivum cDN... 140 8e-033
gb|CK209167.1|CK209167 FGAS020915 Triticum aestivum FGAS: L... 65 2e-022
gb|CD893702.1|CD893702 G118.124F07F010828 G118 Triticum aes... 65 2e-022
gb|CD894158.1|CD894158 G118.125I12R011115 G118 Triticum aes... 64 4e-022
gb|CD915996.1|CD915996 G550.128M19F010717 G550 Triticum aes... 62 1e-021
gb|CD938467.1|CD938467 OV.110B12F010312 OV Triticum aestivu... 62 1e-021
gb|CD915997.1|CD915997 G550.128M19R010920 G550 Triticum aes... 62 1e-021
gb|BJ263607.1|BJ263607 BJ263607 Y. Ogihara unpublished cDNA... 62 1e-021
gb|CD938468.1|CD938468 OV.110B12R010406 OV Triticum aestivu... 62 2e-021
gb|BQ483142.1|BQ483142 WHE3505_B05_C09ZS Wheat unstressed r... 61 3e-021
gb|BJ226525.1|BJ226525 BJ226525 Y. Ogihara unpublished cDNA... 61 3e-021
gb|BJ231444.1|BJ231444 BJ231444 Y. Ogihara unpublished cDNA... 61 3e-021
gb|CN010926.1|CN010926 WHE3877_G10_N19ZS Wheat Fusarium gra... 61 4e-021
>gb|CA497356.1|CA497356 WHE3226_E01_I02ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3226_E01_I02, mRNA sequence
Length = 487
Score = 162 bits (348), Expect = 3e-039
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVG+WN+RAE+LD+WY GQEVYVKVADPLGYN+TEM+ PDN LYCGLL+ QKP
Sbjct: 79 VLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIAPDNTLYCGLLEHLQKP 258
Query: 183 QVHESNSKSSAQGDAGWSNRLLATM 257
Q+HE++ KSS A WS +LLAT+
Sbjct: 259 QIHETSKKSSGHAVARWSTQLLATV 333
Score = 138 bits (296), Expect = 4e-032
Identities = 66/95 (69%), Positives = 69/95 (72%)
Frame = -3 / -3
Query: 286 LKITAATTRIMVARSRLLHPASPCADDLLFDS*TCGFCLSFSRPQ*RALSGTTISVML*P 107
L ITA T VARS +LH A+ C DD L S CGFC SRPQ*R LSG ISV L*P
Sbjct: 362 LPITAVTINDTVARSWVLHRATACPDDFLLVSCICGFCKCSSRPQ*RVLSGAIISVTL*P 183
Query: 106 SGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
SGSATFT*TSCPLYQ SS SAR FQ PTLSS+TRT
Sbjct: 182 SGSATFT*TSCPLYQLSSFSARIFQMPTLSSDTRT 78
>gb|CD898344.1|CD898344 G174.108N06R011121 G174 Triticum aestivum cDNA clone G174108N06,
mRNA sequence
Length = 592
Score = 162 bits (348), Expect = 3e-039
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVG+WN+RAE+LD+WY GQEVYVKVADPLGYN+TEM+ PDN LYCGLL+ QKP
Sbjct: 430 VLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIAPDNTLYCGLLEHLQKP 251
Query: 183 QVHESNSKSSAQGDAGWSNRLLATM 257
Q+HE++ KSS A WS +LLAT+
Sbjct: 250 QIHETSKKSSGHAVARWSTQLLATV 176
Score = 138 bits (296), Expect = 4e-032
Identities = 66/95 (69%), Positives = 69/95 (72%)
Frame = -3 / +3
Query: 286 LKITAATTRIMVARSRLLHPASPCADDLLFDS*TCGFCLSFSRPQ*RALSGTTISVML*P 107
L ITA T VARS +LH A+ C DD L S CGFC SRPQ*R LSG ISV L*P
Sbjct: 147 LPITAGTINDTVARSWVLHRATACPDDFLLVSCICGFCKCSSRPQ*RVLSGAIISVTL*P 326
Query: 106 SGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
SGSATFT*TSCPLYQ SS SAR FQ PTLSS+TRT
Sbjct: 327 SGSATFT*TSCPLYQLSSFSARIFQMPTLSSDTRT 431
>gb|CD898343.1|CD898343 G174.108N06F010821 G174 Triticum aestivum cDNA clone G174108N06,
mRNA sequence
Length = 697
Score = 153 bits (329), Expect = 1e-036
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = +3 / +2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVG+WN+RAE+LD+WY GQEVYVKVADPLGYN+TEM+ PDN LYCGLL+ QKP
Sbjct: 425 VLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIAPDNTLYCGLLEHLQKP 604
Query: 183 QVHESNSKSSAQGDAGWS 236
Q+HE++ KSS A WS
Sbjct: 605 QIHETSKKSSGHAVARWS 658
Score = 124 bits (266), Expect = 6e-028
Identities = 57/79 (72%), Positives = 60/79 (75%)
Frame = -3 / -2
Query: 238 LLHPASPCADDLLFDS*TCGFCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQS 59
+LH A+ C DD L S CGFC SRPQ*R LSG ISV L*PSGSATFT*TSCPLYQ
Sbjct: 660 VLHRATACPDDFLLVSCICGFCKCSSRPQ*RVLSGAIISVTL*PSGSATFT*TSCPLYQL 481
Query: 58 SSLSARRFQTPTLSSETRT 2
SS SAR FQ PTLSS+TRT
Sbjct: 480 SSFSARIFQMPTLSSDTRT 424
>gb|AL829970.1|AL829970 AL829970 q:343 Triticum aestivum cDNA clone A11_q343_plate_11, mRNA
sequence
Length = 420
Score = 140 bits (301), Expect = 8e-033
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +3 / +3
Query: 30 VWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKPQVHESNSKS 209
+WN+RAE+LD+WY GQEVYVKVADPLGYN+TEM+ P+N LYCGLL+ QKPQ+HE++ KS
Sbjct: 9 IWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIAPNNTLYCGLLEHLQKPQIHETSKKS 188
Query: 210 SAQGDAGWSNRLLATM 257
S A WS +LLAT+
Sbjct: 189 SGHAVARWSTQLLATV 236
Score = 117 bits (251), Expect = 7e-026
Identities = 57/85 (67%), Positives = 60/85 (70%)
Frame = -3 / -3
Query: 286 LKITAATTRIMVARSRLLHPASPCADDLLFDS*TCGFCLSFSRPQ*RALSGTTISVML*P 107
L+ITA T VARS +LH A+ C DD L S CGFC SRPQ*R L G ISV L*P
Sbjct: 265 LQITAVTISDTVARSWVLHRATACPDDFLLVSCICGFCKCSSRPQ*RVLFGAIISVTL*P 86
Query: 106 SGSATFT*TSCPLYQSSSLSARRFQ 32
SGSATFT*TSCPLYQ SS SAR FQ
Sbjct: 85 SGSATFT*TSCPLYQLSSFSARIFQ 11
>gb|CK209167.1|CK209167 FGAS020915 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1141
Score = 64.8 bits (135), Expect(2) = 2e-022
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3 / -2
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LLA +
Sbjct: 501 GYNVTESVIPDNALFCGLLREKQKAQKPHGSSSSSASPAVKQSGYLLAVL 352
Score = 61.1 bits (127), Expect(2) = 2e-022
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 609 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 502
>gb|CD893702.1|CD893702 G118.124F07F010828 G118 Triticum aestivum cDNA clone G118124F07,
mRNA sequence
Length = 623
Score = 64.8 bits (135), Expect(2) = 2e-022
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3 / +3
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LLA +
Sbjct: 162 GYNVTESVIPDNALFCGLLREKQKAQKPHGSSSSSASPAVKQSGYLLAVL 311
Score = 61.1 bits (127), Expect(2) = 2e-022
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 54 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 161
>gb|CD894158.1|CD894158 G118.125I12R011115 G118 Triticum aestivum cDNA clone G118125I12,
mRNA sequence
Length = 550
Score = 64.3 bits (134), Expect(2) = 4e-022
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3 / -3
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LLA +
Sbjct: 431 GYNVTESVIPDNALFCGLLREKQKAQKPPGSSSSSASPAVKQSGYLLAVL 282
Score = 60.6 bits (126), Expect(2) = 4e-022
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 539 VLLSLDSPGFWNVRPENLDTWYLGQETYIRVVDPDG 432
>gb|CD915996.1|CD915996 G550.128M19F010717 G550 Triticum aestivum cDNA clone G550128M19,
mRNA sequence
Length = 454
Score = 62.0 bits (129), Expect(2) = 1e-021
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +3 / +2
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q ++ SSA S LLA +
Sbjct: 170 GYNVTESVLPDNALFCGLLREKQKAQKPHGSTSSSASPALKQSGYLLAVL 319
Score = 61.1 bits (127), Expect(2) = 1e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 62 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 169
>gb|CD938467.1|CD938467 OV.110B12F010312 OV Triticum aestivum cDNA clone OV110B12, mRNA
sequence
Length = 716
Score = 62.0 bits (129), Expect(2) = 1e-021
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +3 / +1
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q ++ SSA S LLA +
Sbjct: 229 GYNVTESVLPDNALFCGLLREKQKAQKPHGSTSSSASPALKQSGYLLAVL 378
Score = 61.1 bits (127), Expect(2) = 1e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 121 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 228
>gb|CD915997.1|CD915997 G550.128M19R010920 G550 Triticum aestivum cDNA clone G550128M19,
mRNA sequence
Length = 687
Score = 62.0 bits (129), Expect(2) = 1e-021
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +3 / -1
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q ++ SSA S LLA +
Sbjct: 516 GYNVTESVLPDNALFCGLLREKQKAQKPHGSTSSSASPALKQSGYLLAVL 367
Score = 61.1 bits (127), Expect(2) = 1e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 624 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 517
>gb|BJ263607.1|BJ263607 BJ263607 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh5g03 3', mRNA sequence
Length = 611
Score = 62.0 bits (129), Expect(2) = 1e-021
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +3 / -2
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q ++ SSA S LLA +
Sbjct: 421 GYNVTESVLPDNALFCGLLREKQKAQKPHGSTSSSASPALKQSGYLLAVL 272
Score = 61.1 bits (127), Expect(2) = 1e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 529 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 422
>gb|CD938468.1|CD938468 OV.110B12R010406 OV Triticum aestivum cDNA clone OV110B12, mRNA
sequence
Length = 633
Score = 62.0 bits (129), Expect(2) = 2e-021
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +3 / -2
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+QK Q ++ SSA S LLA +
Sbjct: 515 GYNVTESVLPDNALFCGLLREKQKAQKPHGSTSSSASPALKQSGYLLAVL 366
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 623 VLCSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 516
>gb|BQ483142.1|BQ483142 WHE3505_B05_C09ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3505_B05_C09, mRNA sequence
Length = 696
Score = 61.1 bits (127), Expect(2) = 3e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 439 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 546
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3 / +1
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLL 248
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LL
Sbjct: 547 GYNVTESVLPDNALFCGLLREKQKAQKPHGSSSSSASPALKQSGYLL 687
>gb|BJ226525.1|BJ226525 BJ226525 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl26n22 5', mRNA sequence
Length = 581
Score = 61.1 bits (127), Expect(2) = 3e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 120 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 227
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3 / +3
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLL 248
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LL
Sbjct: 228 GYNVTESVLPDNALFCGLLREKQKAQKPHGSSSSSASPALKQSGYLL 368
>gb|BJ231444.1|BJ231444 BJ231444 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl26n22 3', mRNA sequence
Length = 559
Score = 61.1 bits (127), Expect(2) = 3e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 440 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 333
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3 / -3
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLL 248
GYN+TE V+PDNAL+CGLL+E+QK Q +S SSA S LL
Sbjct: 332 GYNVTESVLPDNALFCGLLREKQKAQKPHGSSSSSASPALKQSGYLL 192
>gb|CN010926.1|CN010926 WHE3877_G10_N19ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3877_G10_N19,
mRNA sequence
Length = 672
Score = 61.1 bits (127), Expect(2) = 4e-021
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLG 110
VL+SLD+ G WN+R E LD WY GQE Y++V DP G
Sbjct: 253 VLLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDG 360
Score = 60.2 bits (125), Expect(2) = 4e-021
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +3 / +1
Query: 108 GYNITEMVVPDNALYCGLLKERQKPQVHESNSKSSAQGDAGWSNRLLATM 257
GYN+TE V+PDNAL+CGLL+E+ Q +S SSA S LLA +
Sbjct: 361 GYNVTESVIPDNALFCGLLREKHNAQKPHGSSSSSASPAVKQSGYLLAVL 510
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 542,387,823
Number of Sequences: 636343
Number of extensions: 9365012
Number of successful extensions: 225015
Number of sequences better than 1.0e-020: 17
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 10450858509
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)