TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis,... 310 7e-084
gb|BJ319189.1|BJ319189 BJ319189 Y. Ogihara unpublished cDNA... 184 6e-046
gb|CD936892.1|CD936892 OV.105G14F010220 OV Triticum aestivu... 111 1e-041
gb|BJ228528.1|BJ228528 BJ228528 Y. Ogihara unpublished cDNA... 116 2e-041
gb|BQ237253.1|BQ237253 TaE05019F09F TaE05 Triticum aestivum... 117 8e-039
gb|BJ279341.1|BJ279341 BJ279341 Y. Ogihara unpublished cDNA... 138 9e-037
gb|CA608984.1|CA608984 wr1.pk0100.d9 wr1 Triticum aestivum ... 134 7e-031
gb|BT009516.1| Triticum aestivum clone wr1.pk0100.d9:fis, f... 134 7e-031
gb|BQ166623.1|BQ166623 WHE0906_E01_I02ZT Wheat 5-15 DAP spi... 103 8e-027
gb|BJ231160.1|BJ231160 BJ231160 Y. Ogihara unpublished cDNA... 118 6e-026
gb|BJ261392.1|BJ261392 BJ261392 Y. Ogihara unpublished cDNA... 113 2e-024
gb|CV776169.1|CV776169 FGAS070573 Triticum aestivum FGAS: L... 81 2e-022
gb|BJ295794.1|BJ295794 BJ295794 Y. Ogihara unpublished cDNA... 81 3e-022
gb|BJ289468.1|BJ289468 BJ289468 Y. Ogihara unpublished cDNA... 81 3e-022
gb|BG905538.1|BG905538 TaLr1140E03R TaLr1 Triticum aestivum... 81 1e-021
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA
sequence
Length = 2056
Score = 310 bits (672), Expect = 7e-084
Identities = 125/160 (78%), Positives = 129/160 (80%)
Frame = -3 / +2
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
+TF R YDVT PP NPNTT GDNVYVL HNTTVDV+LQNANAL NVSEVHPWHLHGHDF
Sbjct: 1337 DTFGRAYDVTRPPHNPNTTTGDNVYVLRHNTTVDVVLQNANALQHNVSEVHPWHLHGHDF 1516
Query: 401 WVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPH 222
WVL RLNL +PPLRNTAVIFPYGWT LRFVADNPGVWAFHCHIEPH
Sbjct: 1517 WVLGYGEGAYRGDAADAARLNLVNPPLRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPH 1696
Query: 221 LHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGHL* 102
LHMGMGVIFAEA+D V KVP EAVSCGA ATALM G HL*
Sbjct: 1697 LHMGMGVIFAEAIDRVGKVPKEAVSCGATATALMNGDHL* 1816
Score = 243 bits (525), Expect = 1e-063
Identities = 106/151 (70%), Positives = 111/151 (73%)
Frame = +1 / -2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+TASLGTL TRS ASAKMTPMPMWRCGS+WQW AHTPGLSATNRS VHPYGK+TAVFRS
Sbjct: 1773 QETASLGTLPTRSMASAKMTPMPMWRCGSMWQWNAHTPGLSATNRSAVHPYGKITAVFRS 1594
Query: 325 GGXXXXXXXXXXXXXXXXXXXXXXTQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCAR 504
GG TQKSWP RCHGCTSLTL SALAFWS+TSTVVL
Sbjct: 1593 GGFTRFSLAASAASPLYAPSPYPSTQKSWPCRCHGCTSLTLCWSALAFWSTTSTVVLWRS 1414
Query: 505 TYTLSPAVVLGFGGGSVTSYSRLNVSAXRAA 597
T TLSP VVLG GG VTS +R NVSA RAA
Sbjct: 1413 T*TLSPVVVLGLCGGRVTS*ARPNVSAGRAA 1321
Score = 105 bits (225), Expect(3) = 9e-045
Identities = 43/61 (70%), Positives = 48/61 (78%)
Frame = +3 / -1
Query: 99 QSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPHARVVRHEP 278
+S+V A HERGGRGA G L+GHL D VD L EDD HAHVEVRLD+AVE PH VVRHEP
Sbjct: 1819 RSEVVAVHERGGRGAAGDGLLGHLADAVDGLGEDDPHAHVEVRLDVAVERPHPGVVRHEP 1640
Query: 279 E 281
+
Sbjct: 1639 Q 1637
Score = 67.5 bits (141), Expect(3) = 9e-045
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +3 / -1
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGGVVRQ 503
QHPEVVAV+VPRVHLADV +RVGVLE HV GVV +
Sbjct: 1525 QHPEVVAVQVPRVHLADVVLERVGVLEHHVHRGVVAE 1415
Score = 58.3 bits (121), Expect(3) = 4e-021
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = -2 / +1
Query: 318 EHGGHLSVRVDDAPVRGGQPGRVGLPLPYRAA 223
EHGG L VRVD A VRGGQP VG+PLP+RAA
Sbjct: 1600 EHGGDLPVRVDGAAVRGGQPRGVGVPLPHRAA 1695
Score = 47.8 bits (98), Expect(3) = 4e-021
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2 / +1
Query: 591 AXRGDVQPGIRRDAAAAEPQHDGGGQRVR 505
A G V+ +RRDAAAA+PQHD GGQR+R
Sbjct: 1327 AAGGHVRARLRRDAAAAQPQHDDGGQRLR 1413
Score = 46.0 bits (94), Expect(3) = 9e-045
Identities = 19/29 (65%), Positives = 19/29 (65%)
Frame = +2 / -3
Query: 506 RTRCPPPSCWGSAAAASRRIPG*TSPRXA 592
R RCPP SCWG AAAASRR T P A
Sbjct: 1412 RRRCPPSSCWGCAAAASRRRRARTCPPAA 1326
Score = 38.6 bits (78), Expect(3) = 4e-021
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -2 / +1
Query: 171 QGAQRGCILWRXGHRAHGRRSPVI 100
QGAQ G +L R GHRAH RR P+I
Sbjct: 1747 QGAQGGRLLRRHGHRAHERRPPLI 1818
>gb|BJ319189.1|BJ319189 BJ319189 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf5g20 3', mRNA sequence
Length = 289
Score = 184 bits (397), Expect = 6e-046
Identities = 71/94 (75%), Positives = 73/94 (77%)
Frame = -3 / -3
Query: 461 NALSRNVSEVHPWHLHGHDFWVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPYGWTM 282
NA NVS VHPWHLHGHDFWVL RLNL +PPLRNTAVIFPYGWT
Sbjct: 287 NAXQHNVSXVHPWHLHGHDFWVLGYGEGAYRGDAADAARLNLVNPPLRNTAVIFPYGWTA 108
Query: 281 LRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVD 180
LRFVADNPGVWAFHCHIEPHLHMGMGVIFAEA+D
Sbjct: 107 LRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAID 6
Score = 159 bits (342), Expect = 2e-038
Identities = 64/96 (66%), Positives = 66/96 (68%)
Frame = +1 / +1
Query: 175 TRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGGXXXXXXXX 354
TRS ASAKMTPMPMWRCGS+WQW AHTPGLSATNRS VHPYGK+TAVFRSGG
Sbjct: 1 TRSMASAKMTPMPMWRCGSMWQWNAHTPGLSATNRSAVHPYGKITAVFRSGGFTRFSLAA 180
Query: 355 XXXXXXXXXXXXXXTQKSWPWRCHGCTSLTLRDSAL 462
TQKSWP RCHGCT LTL AL
Sbjct: 181 SAASPLYAPSPYPSTQKSWPCRCHGCTXLTLCWXAL 288
>gb|CD936892.1|CD936892 OV.105G14F010220 OV Triticum aestivum cDNA clone OV105G14, mRNA
sequence
Length = 662
Score = 111 bits (238), Expect(2) = 1e-041
Identities = 40/66 (60%), Positives = 47/66 (71%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NLRDP ++NT + P+GWT LRF ADNPGVWAFHCHIE H MGMGV F E ++ V +P
Sbjct: 192 NLRDPVMKNTVAVHPFGWTALRFRADNPGVWAFHCHIEAHFFMGMGVAFEEGIERVGDLP 371
Query: 161 NEAVSC 144
E C
Sbjct: 372 EEIRRC 389
Score = 83.5 bits (176), Expect(2) = 5e-026
Identities = 35/58 (60%), Positives = 38/58 (65%)
Frame = +1 / -2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVF 318
Q S G TRS S+K TPMPM +C S+WQWKAHTPGLSA NRS V P G VF
Sbjct: 388 QRLISSGRSPTRSMPSSKATPMPMKKCASMWQWKAHTPGLSARNRSAVQPKGCTATVF 215
Score = 78.5 bits (165), Expect(2) = 1e-041
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = -3 / +2
Query: 527 TAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
T D +Y LA + VDV+LQNAN L+ N SE HPWHLHGHDFW L
Sbjct: 8 TTSDGLYRLAFGSVVDVVLQNANMLAPNNSETHPWHLHGHDFWTL 142
Score = 54.7 bits (113), Expect(2) = 5e-026
Identities = 25/37 (67%), Positives = 27/37 (72%)
Frame = +3 / -2
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGGVVRQ 503
+ PEVVAVEVPRV LA V RQ VGVL+ HV G RQ
Sbjct: 142 ERPEVVAVEVPRVGLAVVGRQHVGVLQHHVHHGPKRQ 32
>gb|BJ228528.1|BJ228528 BJ228528 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl6m17 3', mRNA sequence
Length = 651
Score = 116 bits (248), Expect(2) = 2e-041
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = -3 / -2
Query: 344 LNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKV 165
LN DPPLRNT V+FP+GWT +RFVADN G WAFHCHIEPHLHMGMG +F E + ++
Sbjct: 431 LNTEDPPLRNTVVVFPHGWTAIRFVADNVGAWAFHCHIEPHLHMGMGAVFVEGAHKIREL 252
Score = 88.6 bits (187), Expect(2) = 2e-030
Identities = 33/47 (70%), Positives = 34/47 (72%)
Frame = +1 / +1
Query: 190 SAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S K PMPMWRCGS+WQW AH P LSATNR V P G T VFRSGG
Sbjct: 277 STKTAPMPMWRCGSMWQWNAHAPTLSATNRIAVQPCGNTTTVFRSGG 417
Score = 73.5 bits (154), Expect(2) = 2e-041
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = -3 / -2
Query: 524 AGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ + VY L H VDV+LQNA+ N SE HPWHLHGHDFWVL
Sbjct: 602 SANRVYELPHGAVVDVVLQNADMRRDNDSETHPWHLHGHDFWVL 471
Score = 64.3 bits (134), Expect(2) = 2e-030
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYT 513
TQKSWP RCHGC SL+L AFWS+TST C +YT
Sbjct: 475 TQKSWPCRCHGCVSLSLSLRMSAFWSTTSTTAPCGSSYT 591
>gb|BQ237253.1|BQ237253 TaE05019F09F TaE05 Triticum aestivum cDNA clone TaE05019F09F, mRNA
sequence
Length = 366
Score = 117 bits (251), Expect(2) = 8e-039
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = -3 / -2
Query: 344 LNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKV 165
LN DPPLRNT V+FP+GWT +RFVADN G WAFHCHIEPHLHMGMG +F E ++ ++
Sbjct: 224 LNTEDPPLRNTVVLFPHGWTAIRFVADNVGAWAFHCHIEPHLHMGMGAVFVEGAHMIREL 45
Score = 91.8 bits (194), Expect(2) = 6e-029
Identities = 34/47 (72%), Positives = 35/47 (74%)
Frame = +1 / +1
Query: 190 SAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S K PMPMWRCGS+WQW AH P LSATNR VHP G T VFRSGG
Sbjct: 70 STKTAPMPMWRCGSMWQWNAHAPTLSATNRIAVHPCGNNTTVFRSGG 210
Score = 62.9 bits (131), Expect(2) = 8e-039
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3 / -2
Query: 485 VDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
VDV+LQNA+ N SE HPWHLHGHDFWVL
Sbjct: 362 VDVVLQNADMRRVNDSETHPWHLHGHDFWVL 270
Score = 56.1 bits (116), Expect(2) = 6e-029
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTST 486
TQKSWP RCHGC SL+L AFWS+TST
Sbjct: 274 TQKSWPCRCHGCVSLSLTLRMSAFWSTTST 363
>gb|BJ279341.1|BJ279341 BJ279341 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr2i02 5', mRNA sequence
Length = 599
Score = 138 bits (297), Expect(2) = 9e-037
Identities = 50/89 (56%), Positives = 59/89 (66%)
Frame = -3 / +1
Query: 446 NVSEVHPWHLHGHDFWVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPYGWTMLRFVA 267
N SE HPWHLHGHDFWVL LN+RDP ++NT + P GWT +RF A
Sbjct: 331 NKSETHPWHLHGHDFWVLGYGEGKFNPAADAWRLLNVRDPIMKNTVPLHPDGWTAVRFRA 510
Query: 266 DNPGVWAFHCHIEPHLHMGMGVIFAEAVD 180
DNPGVW FHCH+E H+ MGMGV+F E V+
Sbjct: 511 DNPGVWLFHCHVEAHVFMGMGVVFEEGVE 597
Score = 35.4 bits (71), Expect(2) = 9e-037
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3 / +1
Query: 545 PPNPNTTAGDNVYVLAHNTTVDVLLQNANALS 450
P N T G VY LA + VDV+LQN+N L+
Sbjct: 235 PAPTNGTVGSPVYRLALGSVVDVVLQNSNMLN 330
>gb|CA608984.1|CA608984 wr1.pk0100.d9 wr1 Triticum aestivum cDNA clone wr1.pk0100.d9 5'
end, mRNA sequence
Length = 416
Score = 134 bits (288), Expect = 7e-031
Identities = 54/62 (87%), Positives = 55/62 (88%)
Frame = -3 / +2
Query: 287 TMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGH 108
T LRFVADNPGVWAFHCHIEPHLHMGMGVIFAEA+D V KVP EAVSCGA ATALM G H
Sbjct: 2 TALRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAIDRVGKVPKEAVSCGATATALMNGDH 181
Query: 107 L* 102
L*
Sbjct: 182 L* 187
Score = 104 bits (222), Expect = 9e-022
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +1 / -3
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIV 288
Q+TASLGT TRS ASAKMTP+PMWRCGS+WQW AHTPGLSATNRS V
Sbjct: 144 QETASLGTFPTRSMASAKMTPIPMWRCGSMWQWNAHTPGLSATNRSAV 1
Score = 102 bits (218), Expect = 3e-021
Identities = 42/61 (68%), Positives = 47/61 (77%)
Frame = +3 / -2
Query: 99 QSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPHARVVRHEP 278
+S+V A HERGGRGA G L+GHL D VD L EDD H HVEVRLD+AVE PH VVRHEP
Sbjct: 190 RSEVVAVHERGGRGAAGDGLLGHLPDAVDGLGEDDPHPHVEVRLDVAVERPHPGVVRHEP 11
Query: 279 E 281
+
Sbjct: 10 Q 8
>gb|BT009516.1| Triticum aestivum clone wr1.pk0100.d9:fis, full insert mRNA
sequence
Length = 491
Score = 134 bits (288), Expect = 7e-031
Identities = 54/62 (87%), Positives = 55/62 (88%)
Frame = -3 / +3
Query: 287 TMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGH 108
T LRFVADNPGVWAFHCHIEPHLHMGMGVIFAEA+D V KVP EAVSCGA ATALM G H
Sbjct: 9 TALRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAIDRVGKVPKEAVSCGATATALMNGDH 188
Query: 107 L* 102
L*
Sbjct: 189 L* 194
Score = 104 bits (222), Expect = 9e-022
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +1 / -2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIV 288
Q+TASLGT TRS ASAKMTP+PMWRCGS+WQW AHTPGLSATNRS V
Sbjct: 151 QETASLGTFPTRSMASAKMTPIPMWRCGSMWQWNAHTPGLSATNRSAV 8
Score = 102 bits (218), Expect = 3e-021
Identities = 42/61 (68%), Positives = 47/61 (77%)
Frame = +3 / -1
Query: 99 QSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPHARVVRHEP 278
+S+V A HERGGRGA G L+GHL D VD L EDD H HVEVRLD+AVE PH VVRHEP
Sbjct: 197 RSEVVAVHERGGRGAAGDGLLGHLPDAVDGLGEDDPHPHVEVRLDVAVERPHPGVVRHEP 18
Query: 279 E 281
+
Sbjct: 17 Q 15
>gb|BQ166623.1|BQ166623 WHE0906_E01_I02ZT Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0906_E01_I02, mRNA sequence
Length = 628
Score = 103 bits (219), Expect(2) = 8e-027
Identities = 36/47 (76%), Positives = 39/47 (82%)
Frame = -3 / -1
Query: 344 LNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMG 204
LN DPPLRNT V+FP+GWT +RFVADN G WAFHCHIEPHLH G G
Sbjct: 454 LNTEDPPLRNTVVLFPHGWTAIRFVADNVGAWAFHCHIEPHLHTGHG 314
Score = 83.5 bits (176), Expect(3) = 2e-024
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +1 / +3
Query: 205 PMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
P P+WRCGS+WQW AH P LSATNR VHP G T VFRSGG
Sbjct: 315 PCPVWRCGSMWQWNAHAPTLSATNRIAVHPCGNNTTVFRSGG 440
Score = 41.8 bits (85), Expect(3) = 2e-024
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1 / +2
Query: 424 HGCTSLTLRDSALAFWSSTSTVVLCARTYT 513
HGC SL+L AFWS+TST C +YT
Sbjct: 530 HGCVSLSLSLRMSAFWSTTSTTAPCGSSYT 619
Score = 37.7 bits (76), Expect(2) = 8e-027
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3 / -2
Query: 512 VYVLAHNTTVDVLLQNANALSRNVSEVHP 426
VY L H VDV+LQNA+ N SE HP
Sbjct: 618 VYELPHGAVVDVVLQNADMRRDNDSETHP 532
Score = 24.9 bits (48), Expect(3) = 2e-024
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1 / +3
Query: 397 TQKSWPWRCHGCT 435
T KSWP RC G +
Sbjct: 504 TXKSWPCRCTGAS 542
>gb|BJ231160.1|BJ231160 BJ231160 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl25l06 3', mRNA sequence
Length = 359
Score = 118 bits (252), Expect = 6e-026
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = -3 / -3
Query: 266 DNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGHL* 102
DN GVWAFHCHIEPHLHMGMGVIFAEA+D V KVP EAVSCGA ATALM G HL*
Sbjct: 357 DNHGVWAFHCHIEPHLHMGMGVIFAEAIDRVGKVPKEAVSCGATATALMNGDHL* 193
>gb|BJ261392.1|BJ261392 BJ261392 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh2l10 3', mRNA sequence
Length = 328
Score = 113 bits (241), Expect = 2e-024
Identities = 46/55 (83%), Positives = 47/55 (85%)
Frame = -3 / -3
Query: 266 DNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGHL* 102
DNPGVWAF HIEPHLHMGMGVIFAEA+D V KVP EAVSCGA ATALM G HL*
Sbjct: 326 DNPGVWAFXXHIEPHLHMGMGVIFAEAIDRVGKVPKEAVSCGATATALMNGDHL* 162
>gb|CV776169.1|CV776169 FGAS070573 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 836
Score = 80.8 bits (170), Expect(3) = 2e-022
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFA 192
NL DP RNT + GW ++RFVA+NPG+W FHCH++ H+ MG+G++FA
Sbjct: 346 NLVDPVARNTIAVPAGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFA 495
Score = 32.2 bits (64), Expect(3) = 2e-022
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3 / +1
Query: 575 FSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVH 429
++ ++ +PP G V L +N+TV+V+LQN A +H
Sbjct: 127 YTADFPDGVPPNGTAMVEGTKVRSLPYNSTVEVVLQNPMAFPSESHPIH 273
Score = 30.4 bits (60), Expect(3) = 2e-022
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 440 SEVHPWHLHGHDFWVL 393
SE HP HLHG +F+VL
Sbjct: 253 SESHPIHLHGFNFFVL 300
>gb|BJ295794.1|BJ295794 BJ295794 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5h22 3', mRNA sequence
Length = 734
Score = 80.8 bits (170), Expect(3) = 3e-022
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFA 192
NL DP RNT + GW ++RFVA+NPG+W FHCH++ H+ MG+G++FA
Sbjct: 439 NLVDPVARNTIAVPAGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFA 290
Score = 31.8 bits (63), Expect(3) = 3e-022
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3 / -2
Query: 575 FSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVH 429
++ ++ +PP G V L +N+TV+++LQN A +H
Sbjct: 658 YTADFPDGVPPNGTAMVEGTKVRSLPYNSTVEIVLQNPMAFPSESHPIH 512
Score = 30.4 bits (60), Expect(3) = 3e-022
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 440 SEVHPWHLHGHDFWVL 393
SE HP HLHG +F+VL
Sbjct: 532 SESHPIHLHGFNFFVL 485
>gb|BJ289468.1|BJ289468 BJ289468 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl5h22 5', mRNA sequence
Length = 617
Score = 80.8 bits (170), Expect(3) = 3e-022
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFA 192
NL DP RNT + GW ++RFVA+NPG+W FHCH++ H+ MG+G++FA
Sbjct: 434 NLVDPVARNTIAVPAGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFA 583
Score = 31.8 bits (63), Expect(3) = 3e-022
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3 / +2
Query: 575 FSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVH 429
++ ++ +PP G V L +N+TV+++LQN A +H
Sbjct: 215 YTADFPDGVPPNGTAMVEGTKVRSLPYNSTVEIVLQNPMAFPSESHPIH 361
Score = 30.4 bits (60), Expect(3) = 3e-022
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / +2
Query: 440 SEVHPWHLHGHDFWVL 393
SE HP HLHG +F+VL
Sbjct: 341 SESHPIHLHGFNFFVL 388
>gb|BG905538.1|BG905538 TaLr1140E03R TaLr1 Triticum aestivum cDNA clone TaLr1140E03 5',
mRNA sequence
Length = 679
Score = 80.8 bits (170), Expect(3) = 1e-021
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFA 192
NL DP RNT + GW ++RFVA+NPG+W FHCH++ H+ MG+G++FA
Sbjct: 476 NLVDPVARNTIAVPAGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFA 327
Score = 30.4 bits (60), Expect(3) = 1e-021
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / -3
Query: 440 SEVHPWHLHGHDFWVL 393
SE HP HLHG +F+VL
Sbjct: 569 SESHPIHLHGFNFFVL 522
Score = 29.5 bits (58), Expect(3) = 1e-021
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3 / -3
Query: 551 LPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVH 429
+PP G V L +N+TV+V+LQN +H
Sbjct: 671 VPPNGTAMVEGTKVRSLPYNSTVEVVLQNPMVFPSESHPIH 549
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 522,840,130
Number of Sequences: 636343
Number of extensions: 7754183
Number of successful extensions: 180339
Number of sequences better than 1.0e-020: 25
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 13391772334
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)