TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ218549.1|BJ218549 BJ218549 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ292180.1|BJ292180 BJ292180 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ292905.1|BJ292905 BJ292905 Y. Ogihara unpublished cDNA... 101 5e-021
gb|BJ299300.1|BJ299300 BJ299300 Y. Ogihara unpublished cDNA... 101 5e-021
gb|CA650318.1|CA650318 wre1n.pk0150.c10 wre1n Triticum aest... 101 5e-021
gb|CA705188.1|CA705188 wdk1c.pk020.p19 wdk1c Triticum aesti... 101 5e-021
gb|CD932756.1|CD932756 GR45.118P04F010718 GR45 Triticum aes... 101 5e-021
gb|CK169009.1|CK169009 FGAS043612 Triticum aestivum FGAS: T... 101 5e-021
gb|BJ209664.1|BJ209664 BJ209664 Y. Ogihara unpublished cDNA... 100 9e-021
gb|BJ222186.1|BJ222186 BJ222186 Y. Ogihara unpublished cDNA... 100 9e-021
gb|BJ217107.1|BJ217107 BJ217107 Y. Ogihara unpublished cDNA... 100 9e-021
gb|BJ288446.1|BJ288446 BJ288446 Y. Ogihara unpublished cDNA... 100 9e-021
gb|BJ296763.1|BJ296763 BJ296763 Y. Ogihara unpublished cDNA... 100 9e-021
gb|CA602359.1|CA602359 wr1.pk0016.f2 wr1 Triticum aestivum ... 100 9e-021
gb|CA604184.1|CA604184 wr1.pk0044.h5 wr1 Triticum aestivum ... 100 9e-021
gb|CA701136.1|CA701136 wkm2c.pk0002.b9 wkm2c Triticum aesti... 100 9e-021
gb|CD921971.1|CD921971 G750.100K03F010507 G750 Triticum aes... 100 9e-021
>gb|BJ218549.1|BJ218549 BJ218549 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh38d19 3', mRNA sequence
Length = 338
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / -3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 276 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 106
>gb|BJ292180.1|BJ292180 BJ292180 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26k24 5', mRNA sequence
Length = 485
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 91 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 261
>gb|BJ292905.1|BJ292905 BJ292905 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl29k24 5', mRNA sequence
Length = 486
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 92 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 262
>gb|BJ299300.1|BJ299300 BJ299300 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl29k24 3', mRNA sequence
Length = 443
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / -2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 373 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 203
>gb|CA650318.1|CA650318 wre1n.pk0150.c10 wre1n Triticum aestivum cDNA clone
wre1n.pk0150.c10 5' end, mRNA sequence
Length = 427
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 64 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 234
>gb|CA705188.1|CA705188 wdk1c.pk020.p19 wdk1c Triticum aestivum cDNA clone wdk1c.pk020.p19
5' end, mRNA sequence
Length = 449
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 70 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 240
>gb|CD932756.1|CD932756 GR45.118P04F010718 GR45 Triticum aestivum cDNA clone GR45118P04,
mRNA sequence
Length = 427
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 90 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 260
>gb|CK169009.1|CK169009 FGAS043612 Triticum aestivum FGAS: TaLt6 Triticum aestivum cDNA,
mRNA sequence
Length = 902
Score = 101 bits (216), Expect = 5e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / -1
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 533 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRTFGDMMVV* 363
>gb|BJ209664.1|BJ209664 BJ209664 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh15c11 5', mRNA sequence
Length = 452
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 53 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 223
>gb|BJ222186.1|BJ222186 BJ222186 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl12d08 5', mRNA sequence
Length = 444
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 59 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 229
>gb|BJ217107.1|BJ217107 BJ217107 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh15c11 3', mRNA sequence
Length = 435
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / -3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 379 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 209
>gb|BJ288446.1|BJ288446 BJ288446 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl14i13 5', mRNA sequence
Length = 405
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 60 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 230
>gb|BJ296763.1|BJ296763 BJ296763 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl14i13 3', mRNA sequence
Length = 333
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / -3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 274 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 104
>gb|CA602359.1|CA602359 wr1.pk0016.f2 wr1 Triticum aestivum cDNA clone wr1.pk0016.f2 5'
end, mRNA sequence
Length = 547
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 59 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 229
>gb|CA604184.1|CA604184 wr1.pk0044.h5 wr1 Triticum aestivum cDNA clone wr1.pk0044.h5 5'
end, mRNA sequence
Length = 417
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 70 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 240
>gb|CA701136.1|CA701136 wkm2c.pk0002.b9 wkm2c Triticum aestivum cDNA clone wkm2c.pk0002.b9
5' end, mRNA sequence
Length = 366
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +3
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 36 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 206
>gb|CD921971.1|CD921971 G750.100K03F010507 G750 Triticum aestivum cDNA clone G750100K03,
mRNA sequence
Length = 444
Score = 100 bits (214), Expect = 9e-021
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 64 RPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
RP AS+ VEKLK LW+SQV DEEQWA+NY++LKAAG+FAGSIFLMR FGD+M +*
Sbjct: 74 RPAAMASAPVEKLKSLWNSQVMDEEQWAVNYRVLKAAGIFAGSIFLMRAFGDMMVV* 244
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 413,606,521
Number of Sequences: 636343
Number of extensions: 5213194
Number of successful extensions: 270563
Number of sequences better than 1.0e-020: 25
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 11076123548
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)