TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD881956.1|CD881956 F1.104N12F010330 F1 Triticum aestivu... 204 1e-051
gb|CA688333.1|CA688333 wlm96.pk040.d13 wlm96 Triticum aesti... 169 4e-044
gb|CV760335.1|CV760335 FGAS054719 Triticum aestivum FGAS: L... 173 2e-042
gb|AL824749.1|AL824749 AL824749 p:234 Triticum aestivum cDN... 107 3e-024
gb|CN012928.1|CN012928 WHE3954_F06_L12ZS Wheat Fusarium gra... 106 4e-024
gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stresse... 103 3e-023
gb|BQ803441.1|BQ803441 WHE2837_F11_K21ZS Triticum monococcu... 100 3e-023
gb|BG905373.1|BG905373 TaLr1139C08F TaLr1 Triticum aestivum... 101 4e-023
gb|BQ483250.1|BQ483250 WHE3506_D01_G02ZS Wheat unstressed r... 100 6e-023
gb|BE425760.1|BE425760 WHE0316_C11_C11ZS Wheat unstressed s... 101 1e-022
gb|CD871509.1|CD871509 AZO2.118G11R010403 AZO2 Triticum aes... 99 1e-022
gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aesti... 101 1e-022
gb|BJ215688.1|BJ215688 BJ215688 Y. Ogihara unpublished cDNA... 97 2e-022
gb|BJ208416.1|BJ208416 BJ208416 Y. Ogihara unpublished cDNA... 97 2e-022
gb|CA711259.1|CA711259 wdk2c.pk018.m3 wdk2c Triticum aestiv... 107 2e-022
gb|CD926713.1|CD926713 GR45.001N13R001013 GR45 Triticum aes... 98 2e-022
gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed r... 100 2e-022
gb|CD373574.1|CD373574 WHE0425_A04_A07ZT CS wheat etiolated... 96 3e-022
gb|BJ281677.1|BJ281677 BJ281677 Y. Ogihara unpublished cDNA... 96 3e-022
gb|BE406114.1|BE406114 WHE0404_c07_c07zB Wheat etiolated se... 95 6e-022
gb|BQ802490.1|BQ802490 WHE2826_E05_I10ZS Triticum monococcu... 105 6e-022
gb|CD937281.1|CD937281 OV.106I05F010202 OV Triticum aestivu... 87 8e-022
gb|CK163693.1|CK163693 FGAS016323 Triticum aestivum FGAS: L... 99 9e-022
gb|CK193504.1|CK193504 FGAS001918 Triticum aestivum FGAS: L... 95 9e-022
gb|BJ284242.1|BJ284242 BJ284242 Y. Ogihara unpublished cDNA... 94 1e-021
gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aes... 104 1e-021
gb|CD882790.1|CD882790 F1.111D15F010430 F1 Triticum aestivu... 94 2e-021
gb|CD865781.1|CD865781 AZO2.101M06F001124 AZO2 Triticum aes... 93 3e-021
gb|BQ169201.1|BQ169201 WHE2162_E06_J12ZT Triticum turgidum ... 98 3e-021
gb|BQ743938.1|BQ743938 WHE4109_H10_O19ZS Wheat salt-stresse... 93 3e-021
gb|BE405606.1|BE405606 WHE1209_C09_E17ZS Wheat etiolated se... 93 3e-021
gb|BQ578302.1|BQ578302 WHE0301_D03_G05ZS Wheat unstressed s... 96 4e-021
gb|CD937878.1|CD937878 OV.108F20R010501 OV Triticum aestivu... 92 4e-021
gb|CK163712.1|CK163712 FGAS016342 Triticum aestivum FGAS: L... 99 8e-021
gb|CK213976.1|CK213976 FGAS025891 Triticum aestivum FGAS: L... 95 8e-021
>gb|CD881956.1|CD881956 F1.104N12F010330 F1 Triticum aestivum cDNA clone F1104N12, mRNA
sequence
Length = 662
Score = 204 bits (439), Expect = 1e-051
Identities = 84/150 (56%), Positives = 97/150 (64%)
Frame = +3 / +3
Query: 57 FLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTD 236
+LDSVAGRG VVPWSPQD VLAHPSTACFLTHCGWNSTLET+AAG+PVVAFPQWGDQCTD
Sbjct: 3 YLDSVAGRGMVVPWSPQDLVLAHPSTACFLTHCGWNSTLETLAAGLPVVAFPQWGDQCTD 182
Query: 237 AKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSS 416
AK+LV+E MGVR+ PL GP+A GGSS
Sbjct: 183 AKYLVEEFKMGVRIGTPLRRDSVRDAVEDVVAGPDAGAMLEKARAWCAAARTAVAAGGSS 362
Query: 417 DAHVQAFVDEVSRRACGVQVAKVVPPSSEE 506
D HVQAFVD+V G + K + + ++
Sbjct: 363 DRHVQAFVDQVVAGTIGARADKDIVAAEQQ 452
Score = 174 bits (375), Expect = 1e-042
Identities = 69/101 (68%), Positives = 71/101 (70%)
Frame = +1 / +1
Query: 55 GSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGATSAR 234
G+WTP PGAA WC GA RT C RTRP ASSRTA GTP WR SRR PWW SRSGATSAR
Sbjct: 1 GTWTPSPGAAWWCRGARRTWCSRTRPRRASSRTAAGTPRWRRSRRGFPWWRSRSGATSAR 180
Query: 235 TPSSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRPTRCS 357
TPS+ W SS W ASA RCGGTPC W W G P RCS
Sbjct: 181 TPSTSWRSSRWGCASARRCGGTPCATPWRTSWPGRTPARCS 303
Score = 158 bits (340), Expect(2) = 1e-039
Identities = 67/99 (67%), Positives = 75/99 (75%)
Frame = -2 / -1
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDG 177
EHR G+ P H +H + HGVPPQR A+A H EL+H+ LGVRALVAPLRE HHG RR+
Sbjct: 302 EHRAGVRPGHDVLHGVAHGVPPQRRADAHPHLELLHEVLGVRALVAPLRERHHGKPRRER 123
Query: 176 LQGGVPPAVREEAGGGRVRQHAVLGAPRHHRAAPGHGVQ 60
LQ GVP AVREEA GRVR+H VL APRHH AAPG GVQ
Sbjct: 122 LQRGVPAAVREEARRGRVREHQVLRAPRHHHAAPGDGVQ 6
Score = 125 bits (268), Expect = 5e-028
Identities = 50/59 (84%), Positives = 51/59 (86%)
Frame = -3 / -2
Query: 241 LASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPATE 65
LASVHWSPHCG ATTG+PAA VS VEF PQCVRK AVDGCASTRS GL GTT PRPATE
Sbjct: 187 LASVHWSPHCGNATTGSPAASVSSVEFQPQCVRKHAVDGCASTRSCGLHGTTMPRPATE 11
Score = 25.8 bits (50), Expect(2) = 1e-039
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3 / -2
Query: 466 PQARRDTSSTNAWTCASEDPP 404
P T STNA T S+DPP
Sbjct: 412 PMVPATTWSTNACTWRSDDPP 350
>gb|CA688333.1|CA688333 wlm96.pk040.d13 wlm96 Triticum aestivum cDNA clone wlm96.pk040.d13
5' end, mRNA sequence
Length = 390
Score = 169 bits (364), Expect(2) = 4e-044
Identities = 71/106 (66%), Positives = 80/106 (75%)
Frame = +3 / +3
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PD +LP+G+LDSVAGRG VVPWSP D VLA PST CFL CGWNSTLET+AAG+PVVA
Sbjct: 69 PDCNAMLPEGYLDSVAGRGMVVPWSPXDLVLAXPSTGCFLXXCGWNSTLETLAAGLPVVA 248
Query: 207 FPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEA 344
FP WG QCTDAK+LV+E MGVR+ PL GP+A
Sbjct: 249 FPXWGXQCTDAKYLVEEFKMGVRIGTPLRRDSVRXAXXDVXAGPDA 386
Score = 164 bits (353), Expect = 1e-039
Identities = 65/105 (61%), Positives = 67/105 (63%)
Frame = +1 / +1
Query: 31 TPGRCCRTGSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPS 210
T RC R G+WTP PGAA WC GA T C R RP ASS AGGTP WR SRR PWW S
Sbjct: 73 TATRCSRRGTWTPSPGAAWWCRGARXTWCSRXRPRGASSXXAGGTPRWRRSRRGFPWWRS 252
Query: 211 RSGATSARTPSSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRP 345
R GA SARTPS+ W SS W ASA RCGGTPC W W G P
Sbjct: 253 RXGAXSARTPSTSWRSSRWGCASAXRCGGTPCATPWXTSWPGRTP 387
Score = 140 bits (300), Expect(2) = 3e-034
Identities = 59/94 (62%), Positives = 67/94 (71%)
Frame = -2 / -2
Query: 311 LPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDGLQGGVPPAVREEAGG 132
+ HGVPPQR A+A H EL+H+ LGVRAL AP RE HHG RR+ LQ GVPPA EEA
Sbjct: 353 VAHGVPPQRXADAHPHLELLHEVLGVRALXAPXRERHHGKPRRERLQRGVPPAXXEEAPR 174
Query: 131 GRVRQHAVLGAPRHHRAAPGHGVQEPVRQQRPGV 30
GR R+H V APRHH AAPG GVQ P+R+ R V
Sbjct: 173 GRXREHQVXRAPRHHHAAPGDGVQVPLREHRVAV 72
Score = 111 bits (238), Expect = 8e-024
Identities = 46/59 (77%), Positives = 47/59 (79%)
Frame = -3 / -3
Query: 241 LASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPATE 65
LASVH SP CG ATTG+PAA VS VEFHP C RK VDGCASTRS GL GTT PRPATE
Sbjct: 283 LASVHXSPXCGNATTGSPAASVSSVEFHPXCXRKHPVDGCASTRSCGLHGTTMPRPATE 107
Score = 29.9 bits (59), Expect(2) = 4e-044
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 42 GRPFLWVVRP 71
Score = 25.8 bits (50), Expect(2) = 3e-034
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -3
Query: 29 GRTTHRKGR 3
GRTTHRKGR
Sbjct: 70 GRTTHRKGR 44
>gb|CV760335.1|CV760335 FGAS054719 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 877
Score = 173 bits (373), Expect = 2e-042
Identities = 71/129 (55%), Positives = 79/129 (61%)
Frame = +3 / +3
Query: 96 WSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDELGMGVR 275
WSP D VLAHPSTACFLTHCGWNSTLET+AAG+PVVAFPQWGDQCTDAK+LV+E MGVR
Sbjct: 108 WSPHDLVLAHPSTACFLTHCGWNSTLETLAAGLPVVAFPQWGDQCTDAKYLVEEFKMGVR 287
Query: 276 LRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSR 455
+ PL GP+A GGSSD HVQAFVD+
Sbjct: 288 IGTPLRRDAVRDAVEDVVAGPDAGAMLDKARAWSAAARTAVAAGGSSDRHVQAFVDQFVA 467
Query: 456 RACGVQVAK 482
G + K
Sbjct: 468 GTIGARADK 494
Score = 149 bits (320), Expect = 4e-035
Identities = 59/87 (67%), Positives = 60/87 (68%)
Frame = +1 / +1
Query: 97 GAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGATSARTPSSWWTSSGWVSA 276
GA T CWRTRP ASSRTA GTP WR SRR PWW SRSGATSARTPS+ W SS W A
Sbjct: 109 GARTTWCWRTRPRRASSRTAAGTPRWRRSRRGFPWWRSRSGATSARTPSTSWRSSRWGCA 288
Query: 277 SAGRCGGTPCGRRWTPQWRGPRPTRCS 357
SA RCGGTPC W W G P RCS
Sbjct: 289 SARRCGGTPCATPWRTSWPGRTPARCS 369
Score = 137 bits (293), Expect(2) = 1e-032
Identities = 62/103 (60%), Positives = 70/103 (67%)
Frame = -2 / -3
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDG 177
EHR G+ P H +H + HGVPPQR A+A H EL+H+ LGVRALVAPLRE HHG RR+
Sbjct: 368 EHRAGVRPGHDVLHGVAHGVPPQRRADAHPHLELLHEVLGVRALVAPLRERHHGKPRRER 189
Query: 176 LQGGVPPAVREEAGGGRVRQHAVLGAPRHHRAAPGHGVQEPVR 48
LQ GVP AVREEA GRVRQH V+ APR G PVR
Sbjct: 188 LQRGVPAAVREEARRGRVRQHQVVRAPRGRVGRRYPGNSGPVR 60
Score = 103 bits (220), Expect = 2e-021
Identities = 41/48 (85%), Positives = 42/48 (87%)
Frame = -3 / -1
Query: 241 LASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGL 98
LASVHWSPHCG ATTG+PAA VS VEF PQCVRK AVDGCASTRS GL
Sbjct: 253 LASVHWSPHCGNATTGSPAASVSSVEFQPQCVRKHAVDGCASTRSCGL 110
Score = 23.5 bits (45), Expect(2) = 1e-032
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / -1
Query: 442 STNAWTCASEDPP 404
STNA T S+DPP
Sbjct: 454 STNACTWRSDDPP 416
>gb|AL824749.1|AL824749 AL824749 p:234 Triticum aestivum cDNA clone G05_p234_plate_1, mRNA
sequence
Length = 441
Score = 107 bits (228), Expect(2) = 3e-024
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3 / +3
Query: 63 DSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAK 242
D G G VV W Q +VL+HP+ CF+THCGWNSTLE++A GVP+V PQW DQ T+A
Sbjct: 135 DLCTGGGMVVEWCDQGKVLSHPAVGCFVTHCGWNSTLESVACGVPIVGVPQWTDQGTNAW 314
Query: 243 FLVDELGMGVR 275
+ +LG GVR
Sbjct: 315 LVERQLGTGVR 347
Score = 25.4 bits (49), Expect(2) = 3e-024
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVR 27
GRPFLWV+R
Sbjct: 78 GRPFLWVLR 104
>gb|CN012928.1|CN012928 WHE3954_F06_L12ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3954_F06_L12,
mRNA sequence
Length = 578
Score = 106 bits (227), Expect(2) = 4e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+ DGF D+ R VV W Q RVL+HP+ CF+THCGWNSTLET+A G PVVA PQW D
Sbjct: 66 IDDGFDDAGDERRMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLETVACGAPVVAVPQWSD 245
Query: 225 QCTDAKFLV 251
Q T+A+ +V
Sbjct: 246 QDTNARLVV 272
Score = 25.4 bits (49), Expect(2) = 4e-024
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVR 27
GRP+LWVVR
Sbjct: 30 GRPYLWVVR 56
>gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4120_D01_H02, mRNA sequence
Length = 754
Score = 103 bits (220), Expect(2) = 3e-023
Identities = 38/80 (47%), Positives = 54/80 (67%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + GRG +V W+PQ+ VLAHP+ F TH GWNST+E I+ GVP++ P GD
Sbjct: 328 LPDGLGEELRGRGKIVSWAPQEEVLAHPAVGAFFTHSGWNSTVEAISEGVPMICHPLHGD 507
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q +A+++ D +GV + G
Sbjct: 508 QYGNARYVADVWKVGVEVDG 567
Score = 25.8 bits (50), Expect(2) = 3e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 4 RPFLWVVRP 30
RPF+WVVRP
Sbjct: 271 RPFVWVVRP 297
>gb|BQ803441.1|BQ803441 WHE2837_F11_K21ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2837_F11_K21, mRNA
sequence
Length = 715
Score = 99.6 bits (211), Expect(2) = 3e-023
Identities = 36/77 (46%), Positives = 52/77 (67%)
Frame = +3 / +1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V G+G VV W+PQ RVL+HP+ ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 262 DAFKRRVEGQGLVVGWAPQQRVLSHPAVACFVSHCGWNSTVEGVLHGVPFLCWPYFADQF 441
Query: 231 TDAKFLVDELGMGVRLR 281
+ ++ + G G +LR
Sbjct: 442 CNQSYVCNVWGTGAKLR 492
Score = 29.9 bits (59), Expect(2) = 3e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 193 GRPFLWVVRP 222
>gb|BG905373.1|BG905373 TaLr1139C08F TaLr1 Triticum aestivum cDNA clone TaLr1139C08 3',
mRNA sequence
Length = 625
Score = 101 bits (215), Expect(2) = 4e-023
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GF + AGRG VVPW Q VLAH + A FLTHCGWNS LE++ AGVP++ FP D
Sbjct: 577 LPEGFAAASAGRGLVVPWCCQVEVLAHAALAGFLTHCGWNSVLESVWAGVPMLCFPLLTD 398
Query: 225 QCTDAKFLVDELGMGV 272
Q T+ + +V E +GV
Sbjct: 397 QFTNRRLVVREWRVGV 350
Score = 27.6 bits (54), Expect(2) = 4e-023
Identities = 16/70 (22%), Positives = 22/70 (31%)
Frame = +3 / -1
Query: 258 LGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAF 437
+G+ + RG + G E PGGSS F
Sbjct: 358 VGVPIGDRGKVFPDEVSARIQGVISGQEGQQLRQALRKVTAKLKAAAAPGGSSQRSFDDF 179
Query: 438 VDEVSRRACG 467
VDE++ R G
Sbjct: 178 VDELTHRCGG 149
>gb|BQ483250.1|BQ483250 WHE3506_D01_G02ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3506_D01_G02, mRNA sequence
Length = 625
Score = 99.6 bits (211), Expect(3) = 6e-023
Identities = 40/78 (51%), Positives = 53/78 (67%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GF + AGRG VVPW Q VL+H + FLTHCGWNS LE++ AGVP++ FP D
Sbjct: 132 LPEGFAAASAGRGLVVPWCCQVEVLSHAAVGGFLTHCGWNSVLESVWAGVPMLCFPLLTD 311
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+ + +V E +GV +
Sbjct: 312 QITNRRLVVREWRVGVTI 365
Score = 27.6 bits (54), Expect(3) = 6e-023
Identities = 18/81 (22%), Positives = 26/81 (32%)
Frame = +3 / +3
Query: 258 LGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAF 437
+G+ + RG + G E + GGSS F
Sbjct: 351 VGVTIGDRGAVCADEVKARIERVMSGKEGEELREAVKNVRTTLEAAAAHGGSSQRSFDEF 530
Query: 438 VDEVSRRACGVQVAKVVPPSS 500
VDE++RR G A P +
Sbjct: 531 VDELTRRCGGC*AAPTDRPEA 593
Score = 21.7 bits (41), Expect(3) = 6e-023
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / +3
Query: 1 GRPFLWVVRP 30
G FLWV+RP
Sbjct: 72 GARFLWVMRP 101
>gb|BE425760.1|BE425760 WHE0316_C11_C11ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0316_C11_C11, mRNA
sequence
Length = 372
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + GRG +V W+PQ+ VLAHP+ F TH GWNST+E I+ GVP++ P GD
Sbjct: 59 LPDGLGEELRGRGKIVSWAPQEEVLAHPAVGAFFTHSGWNSTVEAISEGVPMICHPLHGD 238
Query: 225 QCTDAKFLVDELGMGVRL 278
Q +A+++ D +GV +
Sbjct: 239 QYGNARYVADVWKVGVEV 292
Score = 25.8 bits (50), Expect(2) = 1e-022
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRP 30
RPF+WVVRP
Sbjct: 2 RPFVWVVRP 28
>gb|CD871509.1|CD871509 AZO2.118G11R010403 AZO2 Triticum aestivum cDNA clone AZO2118G11,
mRNA sequence
Length = 799
Score = 99.1 bits (210), Expect(2) = 1e-022
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +3 / -3
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 467 DAFKLRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGMLHGVPFLCWPYFADQF 288
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ + G GV++
Sbjct: 287 ANQSYICNVWGTGVKV 240
Score = 28.1 bits (55), Expect(2) = 1e-022
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / -3
Query: 1 GRPFLWVVRP 30
GRPFLW VRP
Sbjct: 530 GRPFLWAVRP 501
>gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aestivum cDNA clone wkm1c.pk005.e20
5' end, mRNA sequence
Length = 504
Score = 101 bits (215), Expect(2) = 1e-022
Identities = 38/73 (52%), Positives = 50/73 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + GRG +V W+PQ+ VLAHP+ F TH GWNST+E IA GVP++ P GD
Sbjct: 269 LPDGLGEELRGRGMIVGWAPQEEVLAHPAVGAFFTHSGWNSTVEAIAEGVPMICQPLHGD 448
Query: 225 QCTDAKFLVDELG 263
Q +AK++ D G
Sbjct: 449 QYGNAKYVADSGG 487
Score = 25.8 bits (50), Expect(2) = 1e-022
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRP 30
RPF+WVVRP
Sbjct: 212 RPFVWVVRP 238
>gb|BJ215688.1|BJ215688 BJ215688 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh8d04 3', mRNA sequence
Length = 706
Score = 96.8 bits (205), Expect(2) = 2e-022
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +3 / -1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F VAG G +V W PQ +VLAHP+ ACF++HCGWNST+E + GVP++ +P + DQ
Sbjct: 535 DEFQTRVAGTGVIVSWCPQQQVLAHPAVACFVSHCGWNSTMEGVRNGVPILCWPYFSDQF 356
Query: 231 TDAKFLVD 254
+ ++ D
Sbjct: 355 ANRSYICD 332
Score = 29.9 bits (59), Expect(2) = 2e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 601 GRPFLWVVRP 572
>gb|BJ208416.1|BJ208416 BJ208416 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh8d04 5', mRNA sequence
Length = 589
Score = 96.8 bits (205), Expect(2) = 2e-022
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F VAG G +V W PQ +VLAHP+ ACF++HCGWNST+E + GVP++ +P + DQ
Sbjct: 203 DEFQTRVAGTGVIVSWCPQQQVLAHPAVACFVSHCGWNSTMEGVRNGVPILCWPYFSDQF 382
Query: 231 TDAKFLVD 254
+ ++ D
Sbjct: 383 ANRSYICD 406
Score = 29.9 bits (59), Expect(2) = 2e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 137 GRPFLWVVRP 166
>gb|CA711259.1|CA711259 wdk2c.pk018.m3 wdk2c Triticum aestivum cDNA clone wdk2c.pk018.m3 5'
end, mRNA sequence
Length = 366
Score = 107 bits (228), Expect = 2e-022
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3 / +2
Query: 63 DSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAK 242
D G G VV W Q +VL+HP+ CF+THCGWNSTLE++A GVP+V PQW DQ T+A
Sbjct: 53 DLCTGGGMVVEWCDQGKVLSHPAVGCFVTHCGWNSTLESVACGVPIVGVPQWTDQGTNAW 232
Query: 243 FLVDELGMGVR 275
+ +LG GVR
Sbjct: 233 LVERQLGTGVR 265
>gb|CD926713.1|CD926713 GR45.001N13R001013 GR45 Triticum aestivum cDNA clone GR45001N13,
mRNA sequence
Length = 726
Score = 97.7 bits (207), Expect(3) = 2e-022
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GF+ + AGRG VVPW Q VL+H + FLTHCGWNS LE++ AGVP++ FP D
Sbjct: 588 LPEGFVAASAGRGLVVPWCCQVEVLSHTALGGFLTHCGWNSVLESVWAGVPMLCFPLLTD 409
Query: 225 QCTDAKFLVDELGMGV 272
Q T+ + +V E +G+
Sbjct: 408 QFTNRRLVVREWRVGM 361
Score = 28.1 bits (55), Expect(3) = 2e-022
Identities = 16/67 (23%), Positives = 22/67 (32%)
Frame = +3 / -1
Query: 258 LGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAF 437
+GM + RG + G E + GGSS F
Sbjct: 369 VGMPIGDRGAVFADEVRARIEGIMSGKEGEELREAVKNVRATLEAATTHGGSSQQSFDEF 190
Query: 438 VDEVSRR 458
VDE++RR
Sbjct: 189 VDELTRR 169
Score = 21.7 bits (41), Expect(3) = 2e-022
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / -1
Query: 1 GRPFLWVVRP 30
G FLWV+RP
Sbjct: 648 GTRFLWVMRP 619
>gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3515_A05_B09, mRNA sequence
Length = 545
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + GRG +V W+PQ+ VLAHP+ F TH GWNST+E IA GVP++ P GD
Sbjct: 332 LPDGLGEELRGRGMIVSWAPQEEVLAHPAVGAFFTHSGWNSTVEAIAEGVPMICHPLHGD 511
Query: 225 QCTDAKFLVD 254
Q +A+++ D
Sbjct: 512 QYGNARYVAD 541
Score = 25.8 bits (50), Expect(2) = 2e-022
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRP 30
RPF+WVVRP
Sbjct: 275 RPFVWVVRP 301
>gb|CD373574.1|CD373574 WHE0425_A04_A07ZT CS wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0425_A04_A07, mRNA
sequence
Length = 680
Score = 96.4 bits (204), Expect(2) = 3e-022
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 551 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 372
Query: 225 QCTDAKFLVDELGMGVRL 278
Q ++A+++ D +GV +
Sbjct: 371 QFSNARYVCDVWKVGVEI 318
Score = 29.5 bits (58), Expect(2) = 3e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -1
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 608 RPFLWVVRPT 579
>gb|BJ281677.1|BJ281677 BJ281677 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr23e01 5', mRNA sequence
Length = 549
Score = 96.4 bits (204), Expect(2) = 3e-022
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 213 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 392
Query: 225 QCTDAKFLVDELGMGVRL 278
Q ++A+++ D +GV +
Sbjct: 393 QFSNARYVCDVWKVGVEI 446
Score = 29.5 bits (58), Expect(2) = 3e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 156 RPFLWVVRPT 185
>gb|BE406114.1|BE406114 WHE0404_c07_c07zB Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0404_c07_c07, mRNA
sequence
Length = 385
Score = 95.5 bits (202), Expect(2) = 6e-022
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 152 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGFFITHSGWNSTVEAVSEGVPMICLPLHGD 331
Query: 225 QCTDAKFLVDELGMGVRL 278
Q ++A+++ D +GV +
Sbjct: 332 QFSNARYVCDVWKVGVEI 385
Score = 29.5 bits (58), Expect(2) = 6e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 95 RPFLWVVRPT 124
>gb|BQ802490.1|BQ802490 WHE2826_E05_I10ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2826_E05_I10, mRNA
sequence
Length = 714
Score = 105 bits (224), Expect = 6e-022
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +3 / +3
Query: 81 GAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDEL 260
G VV W Q RVL+HPS ACF+THCGWNSTLE +A GVP VA P W DQ +A L +E
Sbjct: 123 GMVVEWCDQVRVLSHPSVACFVTHCGWNSTLEAVACGVPAVAAPSWSDQPVNAHLLAEEW 302
Query: 261 GMGVR 275
G+ VR
Sbjct: 303 GVAVR 317
>gb|CD937281.1|CD937281 OV.106I05F010202 OV Triticum aestivum cDNA clone OV106I05, mRNA
sequence
Length = 704
Score = 87.2 bits (184), Expect(3) = 8e-022
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = +3 / +1
Query: 87 VVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDELGM 266
V W+PQ VLAH + CF+THCGWNS LE++ AGVP++A+P + +Q +A FL E+ +
Sbjct: 421 VKSWAPQRDVLAHDAVDCFVTHCGWNSVLESVMAGVPMLAWPLYAEQLMNAVFLEKEMEL 600
Query: 267 GVRLRG 284
V + G
Sbjct: 601 AVAMEG 618
Score = 32.2 bits (64), Expect(3) = 8e-022
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3 / +1
Query: 27 PDTRPLLPDGFLDSVAGRGAVV 92
PD LLP GFL+ GRG VV
Sbjct: 358 PDLDALLPQGFLERTQGRGLVV 423
Score = 22.6 bits (43), Expect(3) = 8e-022
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 1 GRPFLWVVRPTP 36
G FLWVVR P
Sbjct: 283 GHRFLWVVRSPP 318
>gb|CK163693.1|CK163693 FGAS016323 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1081
Score = 99.1 bits (210), Expect(2) = 9e-022
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +3 / +3
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LP FL AGR + W PQ VL HP+ FLTH GWNSTLE++ GVPV+++P +G
Sbjct: 309 VLPPEFLTETAGRRLMASWCPQQEVLNHPAVGAFLTHSGWNSTLESMCGGVPVISWPFFG 488
Query: 222 DQCTDAKFLVDELGMGVRL 278
DQ T+ ++ E G+G+ +
Sbjct: 489 DQQTNCRYQCKEWGVGMEI 545
Score = 25.4 bits (49), Expect(2) = 9e-022
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 1 GRPFLWVVRPTPGR 42
G+ F+WV+RP GR
Sbjct: 255 GQHFVWVIRPDLGR 296
>gb|CK193504.1|CK193504 FGAS001918 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 821
Score = 95.0 bits (201), Expect(2) = 9e-022
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 341 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 520
Query: 225 QCTDAKFLVDELGMGVRL 278
Q ++A+++ D +G+ +
Sbjct: 521 QFSNARYVCDVWKVGMEI 574
Score = 29.5 bits (58), Expect(2) = 9e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 284 RPFLWVVRPT 313
>gb|BJ284242.1|BJ284242 BJ284242 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr1k09 3', mRNA sequence
Length = 717
Score = 94.1 bits (199), Expect(2) = 1e-021
Identities = 32/68 (47%), Positives = 50/68 (73%)
Frame = +3 / -1
Query: 75 GRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVD 254
G+G VV W+PQ++VL HP+ CF+THCGWNSTLE + G+P++ +P + DQ T+ ++ D
Sbjct: 438 GKGKVVGWAPQEQVLGHPAVGCFVTHCGWNSTLEGVRNGLPMLCWPYFTDQFTNQTYICD 259
Query: 255 ELGMGVRL 278
+G+R+
Sbjct: 258 IWRVGLRV 235
Score = 29.9 bits (59), Expect(2) = 1e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 519 GRPFLWVVRP 490
>gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aestivum cDNA clone G550125P10,
mRNA sequence
Length = 463
Score = 104 bits (222), Expect = 1e-021
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + GRG +V W+PQ+ VLAHP+ F TH GWNST+E IA GVP++ P GD
Sbjct: 38 LPDGLGEELRGRGMIVGWAPQEEVLAHPAVGAFFTHSGWNSTVEAIAEGVPMICHPLHGD 217
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q +A+++ D +GV + G
Sbjct: 218 QYGNARYVADVWRVGVEVDG 277
>gb|CD882790.1|CD882790 F1.111D15F010430 F1 Triticum aestivum cDNA clone F1111D15, mRNA
sequence
Length = 730
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
+ F V G+G VV W+PQ RVL+HP+ ACF++HCGWNST+E + GV + +P + DQ
Sbjct: 347 NAFKRRVEGQGLVVGWAPQQRVLSHPAVACFVSHCGWNSTVEGVLHGVSFLCWPYFADQF 526
Query: 231 TDAKFLVDELGMGVRLR 281
+ ++ + G G +LR
Sbjct: 527 CNQSYVCNVWGTGAKLR 577
Score = 29.9 bits (59), Expect(2) = 2e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 278 GRPFLWVVRP 307
>gb|CD865781.1|CD865781 AZO2.101M06F001124 AZO2 Triticum aestivum cDNA clone AZO2101M06,
mRNA sequence
Length = 723
Score = 93.2 bits (197), Expect(2) = 3e-021
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 358 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 537
Query: 225 QCTDAKFLVD 254
Q ++A+++ D
Sbjct: 538 QFSNARYVCD 567
Score = 29.5 bits (58), Expect(2) = 3e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 301 RPFLWVVRPT 330
>gb|BQ169201.1|BQ169201 WHE2162_E06_J12ZT Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2162_E06_J12, mRNA sequence
Length = 718
Score = 97.7 bits (207), Expect(2) = 3e-021
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +3 / -3
Query: 48 PDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQ 227
P GF A RG V W PQ +VL HP+ FLTH GWNSTLE++ GVPV+++P +GDQ
Sbjct: 611 PLGFSAETAERGLVASWCPQQQVLNHPAVGAFLTHSGWNSTLESMCGGVPVMSWPFFGDQ 432
Query: 228 CTDAKFLVDELGMGVRL 278
T+ ++ +E G+G+ +
Sbjct: 431 QTNCRYQCNEWGVGMEI 381
Score = 24.9 bits (48), Expect(2) = 3e-021
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
GR FLW++RP
Sbjct: 669 GRHFLWIIRP 640
>gb|BQ743938.1|BQ743938 WHE4109_H10_O19ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4109_H10_O19, mRNA sequence
Length = 656
Score = 93.2 bits (197), Expect(2) = 3e-021
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 442 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 621
Query: 225 QCTDAKFLVD 254
Q ++A+++ D
Sbjct: 622 QFSNARYVCD 651
Score = 29.5 bits (58), Expect(2) = 3e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 385 RPFLWVVRPT 414
>gb|BE405606.1|BE405606 WHE1209_C09_E17ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1209_C09_E17, mRNA
sequence
Length = 634
Score = 93.2 bits (197), Expect(2) = 3e-021
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 419 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 598
Query: 225 QCTDAKFLVD 254
Q ++A+++ D
Sbjct: 599 QFSNARYVCD 628
Score = 29.5 bits (58), Expect(2) = 3e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRPT 33
RPFLWVVRPT
Sbjct: 362 RPFLWVVRPT 391
>gb|BQ578302.1|BQ578302 WHE0301_D03_G05ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0301_D03_G05, mRNA
sequence
Length = 662
Score = 96.4 bits (204), Expect(2) = 4e-021
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDG + + G +V W+PQ VLAHP+ F+TH GWNST+E ++ GVP++ P GD
Sbjct: 76 LPDGLDEQIRDHGRLVSWAPQVEVLAHPAVGAFITHSGWNSTVEAVSEGVPMICLPLHGD 255
Query: 225 QCTDAKFLVDELGMGVRL 278
Q ++A+++ D +GV +
Sbjct: 256 QFSNARYVCDVWKVGVEI 309
Score = 25.8 bits (50), Expect(2) = 4e-021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 4 RPFLWVVRPT 33
R FLWVVRPT
Sbjct: 19 RSFLWVVRPT 48
>gb|CD937878.1|CD937878 OV.108F20R010501 OV Triticum aestivum cDNA clone OV108F20, mRNA
sequence
Length = 656
Score = 92.3 bits (195), Expect(2) = 4e-021
Identities = 32/68 (47%), Positives = 46/68 (67%)
Frame = +3 / -2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F VAG G +V W Q +VLAHP+ ACF++HCGWNST+E + GVP++ +P + DQ
Sbjct: 562 DEFQTRVAGTGVIVSWCLQQQVLAHPAVACFVSHCGWNSTMEGVRNGVPILCWPYFSDQF 383
Query: 231 TDAKFLVD 254
+ ++ D
Sbjct: 382 ANRSYICD 359
Score = 29.9 bits (59), Expect(2) = 4e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 628 GRPFLWVVRP 599
>gb|CK163712.1|CK163712 FGAS016342 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1115
Score = 99.1 bits (210), Expect(2) = 8e-021
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +3 / +2
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LP FL AGR + W PQ VL HP+ FLTH GWNSTLE++ GVPV+++P +G
Sbjct: 305 VLPPEFLTETAGRRLMASWCPQQEVLNHPAVGAFLTHSGWNSTLESMCGGVPVISWPFFG 484
Query: 222 DQCTDAKFLVDELGMGVRL 278
DQ T+ ++ E G+G+ +
Sbjct: 485 DQQTNCRYQCKEWGVGMEI 541
Score = 22.1 bits (42), Expect(2) = 8e-021
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
G+ F+WV+RP
Sbjct: 251 GQHFVWVIRP 280
>gb|CK213976.1|CK213976 FGAS025891 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1078
Score = 95.0 bits (201), Expect(2) = 8e-021
Identities = 33/80 (41%), Positives = 53/80 (66%)
Frame = +3 / -1
Query: 39 PLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQW 218
PLLP GFL+S+ G G + W PQ+ V H + FLTH GWNST+E++ GVP + +P +
Sbjct: 670 PLLPRGFLESIEGPGVLASWCPQEAVFRHEAVGVFLTHSGWNSTVESLCGGVPTLCWPFF 491
Query: 219 GDQCTDAKFLVDELGMGVRL 278
+Q T+++++ E G+ + +
Sbjct: 490 AEQQTNSRYICVEWGVAMEI 431
Score = 26.3 bits (51), Expect(2) = 8e-021
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 7 PFLWVVRPTP 36
PFLW++RP P
Sbjct: 717 PFLWIIRPGP 688
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 832,899,562
Number of Sequences: 636343
Number of extensions: 18316731
Number of successful extensions: 565024
Number of sequences better than 1.0e-020: 45
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 18979068076
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)