TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed... 307 6e-083
gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorgh... 130 5e-036
gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed... 145 2e-034
gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorgh... 134 7e-031
gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorgh... 48 8e-005
gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation... 48 8e-005
gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation... 48 8e-005
gb|CL147764.1|CL147764 104_327_10592619_116_31781_127 Sorgh... 33 2.7
gb|CW100245.1|CW100245 104_467_11003996_116_34391_072 Sorgh... 33 2.7
gb|CW227084.1|CW227084 104_665_11205227_148_37224_042 Sorgh... 33 2.7
gb|CW227823.1|CW227823 104_667_11206022_148_37245_057 Sorgh... 33 2.7
gb|CW229812.1|CW229812 104_671_11207515_148_37265_076 Sorgh... 33 2.7
gb|CW231043.1|CW231043 104_680_11210917_148_37339_061 Sorgh... 33 2.7
gb|CW231897.1|CW231897 104_681_11211370_148_37350_041 Sorgh... 33 2.7
gb|CW276260.1|CW276260 104_749_11405393_116_35386_065 Sorgh... 33 2.7
gb|CB924585.1|CB924585 ABA1_21_C08.g1_A012 Abscisic acid-tr... 32 3.7
gb|CL151625.1|CL151625 104_334_10779392_114_31361_176 Sorgh... 31 7.1
gb|CW036353.1|CW036353 104_267_10503712_114_30374 Sorghum m... 31 7.1
gb|CW092364.1|CW092364 104_454_10999115_114_33036_034 Sorgh... 31 7.1
gb|CW092365.1|CW092365 104_454_10999115_116_33040_034 Sorgh... 31 7.1
gb|CW050806.1|CW050806 104_290_10514863_114_30195 Sorghum m... 31 9.7
gb|CW050807.1|CW050807 104_290_10514863_115_30205 Sorghum m... 31 9.7
gb|CW072224.1|CW072224 104_325_10592139_116_30541 Sorghum m... 31 9.7
gb|CW072493.1|CW072493 104_325_10592296_114_30538 Sorghum m... 31 9.7
gb|CW095092.1|CW095092 104_460_11001092_148_34321_080 Sorgh... 31 9.7
gb|CW257182.1|CW257182 104_722_11227198_148_35149_087 Sorgh... 31 9.7
gb|CW343457.1|CW343457 104_845_11487432_116_36184_084 Sorgh... 31 9.7
gb|CD220185.1|CD220185 CCC1_65_H01.g1_A007 Callus culture/c... 31 9.7
gb|CD221295.1|CD221295 CCC1_74_C02.g1_A007 Callus culture/c... 31 9.7
gb|CD221399.1|CD221399 CCC1_54_F06.g1_A007 Callus culture/c... 31 9.7
gb|CF481064.1|CF481064 POL1_69_F04.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF481178.1|CF481178 POL1_70_A06.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF485288.1|CF485288 POL1_30_D02.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF486589.1|CF486589 POL1_38_C11.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF487935.1|CF487935 POL1_46_F12.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF489599.1|CF489599 POL1_58_C02.g1_A002 Pollen Sorghum b... 31 9.7
gb|CF489923.1|CF489923 POL1_61_A05.g1_A002 Pollen Sorghum b... 31 9.7
>gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 3', mRNA sequence
Length = 729
Score = 307 bits (664), Expect = 6e-083
Identities = 126/131 (96%), Positives = 128/131 (97%)
Frame = -1 / +1
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
KYDGPSDSFKALIDMAAVHSSCRLCIHIATKI LKEE TPKFTNRPCSCSSKKGTVYHLF
Sbjct: 112 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIQLKEEMTPKFTNRPCSCSSKKGTVYHLF 291
Query: 214 IRERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRI 35
IRERGRFKSESIYMRSG+LTLGALESAVL KFRSLNHVPVWKDERPPSIRGGDDLK+YRI
Sbjct: 292 IRERGRFKSESIYMRSGRLTLGALESAVLSKFRSLNHVPVWKDERPPSIRGGDDLKVYRI 471
Query: 34 YPVGLTQRQAL 2
YPVGLTQRQAL
Sbjct: 472 YPVGLTQRQAL 504
Score = 265 bits (574), Expect = 2e-070
Identities = 113/130 (86%), Positives = 121/130 (93%)
Frame = -3 / +3
Query: 392 V*WSI*FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLVY 213
V*WS+*FFQS Y HGS SFILSSLYTYCYQD KGG DSKIYKS+L*LFQQKG+SLPL+Y
Sbjct: 114 V*WSL*FFQSPY*HGSSSFILSSLYTYCYQDPVKGGNDSKIYKSSL*LFQQKGNSLPLIY 293
Query: 212 PRERAV*VREHLYEIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNL 33
PR+RAV*VREHLYEIGPVN+GSLGICSA+*I*VPQ RSCMEG*K TEY*RWG*PE+IQNL
Sbjct: 294 PRKRAV*VREHLYEIGPVNSGSLGICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PESIQNL 473
Query: 32 PSRSNTTSGF 3
P RSNTTSGF
Sbjct: 474 PGRSNTTSGF 503
Score = 265 bits (573), Expect = 2e-070
Identities = 114/131 (87%), Positives = 119/131 (90%)
Frame = +2 / -1
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARSHIN 181
QSLTLC*TD VNSV FQVIPTSNTRW FILPYRNV+EGPKFTEHCRFQGSQ * ARSHIN
Sbjct: 504 QSLTLC*TDRVNSVYFQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PARSHIN 325
Query: 182 AL*LKPPSLSDKQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDK 361
AL*LKPPS SDK VVNC LFAGTATR+ICKFWS FLL*++LGSNMYTKTTR*MN CHV+K
Sbjct: 324 AL*LKPPSFSDK*VVNCSLFAGTATRTICKFWSHFLL*LDLGSNMYTKTTR*MNCCHVNK 145
Query: 362 SFERIRWTIIL 394
FERIR TIIL
Sbjct: 144 GFERIRGTIIL 112
Score = 254 bits (549), Expect = 5e-067
Identities = 114/131 (87%), Positives = 117/131 (89%)
Frame = -2 / +2
Query: 393 SMMVHLILSKLLSTWQRFIHLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTTCL 214
SMMV LILSK L TWQ+FIHLVVFVYILLPR *RRK LQNLQI LVAVPAKR QFTT L
Sbjct: 113 SMMVPLILSKPLLTWQQFIHLVVFVYILLPRSS*RRK*LQNLQIVLVAVPAKREQFTTYL 292
Query: 213 SEREGGLSQRAFI*DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEF 34
SE+EGGLSQRAFI*DRA * WEPWNLQCSVNLGPS TFLYGRMK HRVLEVGMT* YTEF
Sbjct: 293 SEKEGGLSQRAFI*DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEVGMT*KYTEF 472
Query: 33 TQSV*HNVRLC 1
T+SV*HNVRLC
Sbjct: 473 TRSV*HNVRLC 505
Score = 239 bits (517), Expect = 1e-062
Identities = 109/130 (83%), Positives = 112/130 (86%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDLI*M 182
KA*RCVRPTG*ILY+FR FHTGT LRDLNL STADSKAP VN PDLI*M
Sbjct: 503 KA*RCVRPTG*ILYTFRSSPPLILGGLSSFHTGT*LRDLNLLSTADSKAPRVNRPDLI*M 324
Query: 183 LSDLNRPLSRINKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIR 362
LSDLNRPLSRINKW*TVPFLLEQLQGRFVNFGV+SSF ILVAICIQRRQDE*TAAMSIR
Sbjct: 323 LSDLNRPLSRINKW*TVPFLLEQLQGRFVNFGVISSFNWILVAICIQRRQDE*TAAMSIR 144
Query: 363 ALKESDGPSY 392
ALKES+GPSY
Sbjct: 143 ALKESEGPSY 114
Score = 238 bits (514), Expect = 3e-062
Identities = 103/131 (78%), Positives = 105/131 (80%)
Frame = +1 / -3
Query: 1 TKPDVVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPISYK 180
TKPDVVLDR GKFCI+SGHPHL*YSV FHPSIQER *GT*IY ALQIPRLP LTGPISYK
Sbjct: 505 TKPDVVLDRPGKFCILSGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPISYK 326
Query: 181 CXXXXXXXXXXXXXXKLSPFCWNSYKVDL*ILESFPPLNESW*QYVYKDDKMNEPLPCR* 360
C KL PFCWNSYK DL*ILESFPPL SW*QYVYKDDKMNE LPC+*
Sbjct: 325 CSLT*TALFLG*ISGKLFPFCWNSYKDDL*ILESFPPLTGSW*QYVYKDDKMNELLPCQ* 146
Query: 361 EL*KNQMDHHT 393
L*KNQ DHHT
Sbjct: 145 GL*KNQRDHHT 113
>gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948100, DNA
sequence
Length = 599
Score = 130 bits (278), Expect(2) = 5e-036
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = -1 / +1
Query: 187 ESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQ 8
+S+ RSG+LTLGALESAVL KFRSLNHVPVWKDERPPSIRGGDDL +YRIYPVGLTQRQ
Sbjct: 382 QSMLCRSGRLTLGALESAVLSKFRSLNHVPVWKDERPPSIRGGDDL*VYRIYPVGLTQRQ 561
Query: 7 AL 2
AL
Sbjct: 562 AL 567
Score = 123 bits (263), Expect(2) = 1e-035
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = -2 / +2
Query: 171 DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEFTQSV*HNVRLC 1
DRA * WEPWNLQCSVNLGPS TFLYGRMK HRVLEVGMT YTEFT+SV*HNVRLC
Sbjct: 398 DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEVGMTCKYTEFTRSV*HNVRLC 568
Score = 118 bits (252), Expect(2) = 1e-032
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = +2 / -3
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARS 172
QSLTLC*TD VNSV QVIPTSNTRW FILPYRNV+EGPKFTEHCRFQGSQ * ARS
Sbjct: 567 QSLTLC*TDRVNSVYLQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PARS 397
Score = 117 bits (251), Expect(2) = 2e-030
Identities = 50/57 (87%), Positives = 52/57 (91%)
Frame = +1 / -2
Query: 1 TKPDVVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPI 171
TKPDVVLDR GKFCI++GHPHL*YSV FHPSIQER *GT*IY ALQIPRLP LTGPI
Sbjct: 568 TKPDVVLDRPGKFCILTGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPI 398
Score = 116 bits (247), Expect(2) = 7e-030
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3 / +3
Query: 173 EIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNLPSRSNTTSGF 3
+IGPVN+GSLGICSA+*I*VPQ RSCMEG*K TEY*RWG*P +IQNLP RSNTTSGF
Sbjct: 396 QIGPVNSGSLGICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PVSIQNLPGRSNTTSGF 566
Score = 85.4 bits (180), Expect = 4e-016
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = +3 / -1
Query: 3 KA*RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDL 173
KA*RCVRPTG*ILY++R FHTGT LRDLNL STADSKAP VN PDL
Sbjct: 566 KA*RCVRPTG*ILYTYRSSPPLILGGLSSFHTGT*LRDLNLLSTADSKAPRVNRPDL 396
Score = 46.0 bits (94), Expect(2) = 1e-035
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 220 LFIRERGRFKSESIYMRSGQLTL 152
LFIRERGRFKSESIYMR G T+
Sbjct: 3 LFIRERGRFKSESIYMRYGSSTI 71
Score = 41.4 bits (84), Expect(2) = 1e-032
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 156 VNWPDLI*MLSDLNRPLSRINK 221
V P LI*MLSDLNRPLSRINK
Sbjct: 67 VELPYLI*MLSDLNRPLSRINK 2
Score = 40.5 bits (82), Expect(2) = 5e-036
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -3 / +2
Query: 221 LVYPRERAV*VREHLYEI 168
L+YPR+RAV*VREHLYE+
Sbjct: 2 LIYPRKRAV*VREHLYEV 55
Score = 34.5 bits (69), Expect(2) = 2e-030
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2 / -1
Query: 173 HINAL*LKPPSLSDK 217
HINAL*LKPPS SDK
Sbjct: 50 HINAL*LKPPSFSDK 6
Score = 34.1 bits (68), Expect(2) = 7e-030
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +1
Query: 222 TCLSEREGGLSQRAFI* 172
T LSE+EGGLSQRAFI*
Sbjct: 1 TYLSEKEGGLSQRAFI* 51
>gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 5', mRNA sequence
Length = 641
Score = 145 bits (312), Expect = 2e-034
Identities = 58/60 (96%), Positives = 58/60 (96%)
Frame = -1 / +3
Query: 394 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
KYDGPSDSFKALIDMAAVHSSCRLCIHIATKI LKEE TPKFTNRPCSCSSKKGTVYHLF
Sbjct: 462 KYDGPSDSFKALIDMAAVHSSCRLCIHIATKIQLKEEMTPKFTNRPCSCSSKKGTVYHLF 641
Score = 127 bits (271), Expect = 1e-028
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +3 / -2
Query: 216 NKW*TVPFLLEQLQGRFVNFGVLSSFK*ILVAICIQRRQDE*TAAMSIRALKESDGPSY 392
NKW*TVPFLLEQLQGRFVNFGV+SSF ILVAICIQRRQDE*TAAMSIRALKES+GPSY
Sbjct: 640 NKW*TVPFLLEQLQGRFVNFGVISSFNWILVAICIQRRQDE*TAAMSIRALKESEGPSY 464
Score = 117 bits (251), Expect = 6e-026
Identities = 50/60 (83%), Positives = 54/60 (90%)
Frame = +2 / -1
Query: 215 KQVVNCPLFAGTATRSICKFWSPFLL*MNLGSNMYTKTTR*MNRCHVDKSFERIRWTIIL 394
K VVNC LFAGTATR+ICKFWS FLL*++LGSNMYTKTTR*MN CHV+K FERIR TIIL
Sbjct: 641 K*VVNCSLFAGTATRTICKFWSHFLL*LDLGSNMYTKTTR*MNCCHVNKGFERIRGTIIL 462
Score = 117 bits (250), Expect = 8e-026
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = -3 / +2
Query: 392 V*WSI*FFQSSYRHGSGSFILSSLYTYCYQDSFKGGKDSKIYKSTL*LFQQKGDSLPLV 216
V*WS+*FFQS Y HGS SFILSSLYTYCYQD KGG DSKIYKS+L*LFQQKG+SLPL+
Sbjct: 464 V*WSL*FFQSPY*HGSSSFILSSLYTYCYQDPVKGGNDSKIYKSSL*LFQQKGNSLPLI 640
Score = 117 bits (250), Expect = 8e-026
Identities = 48/56 (85%), Positives = 49/56 (87%)
Frame = +1 / -3
Query: 226 KLSPFCWNSYKVDL*ILESFPPLNESW*QYVYKDDKMNEPLPCR*EL*KNQMDHHT 393
KL PFCWNSYK DL*ILESFPPL SW*QYVYKDDKMNE LPC+* L*KNQ DHHT
Sbjct: 630 KLFPFCWNSYKDDL*ILESFPPLTGSW*QYVYKDDKMNELLPCQ*GL*KNQRDHHT 463
Score = 102 bits (218), Expect = 2e-021
Identities = 49/58 (84%), Positives = 50/58 (86%)
Frame = -2 / +1
Query: 393 SMMVHLILSKLLSTWQRFIHLVVFVYILLPRFI*RRKGLQNLQIDLVAVPAKRGQFTT 220
SMMV LILSK L TWQ+FIHLVVFVYILLPR *RRK LQNLQI LVAVPAKR QFTT
Sbjct: 463 SMMVPLILSKPLLTWQQFIHLVVFVYILLPRSS*RRK*LQNLQIVLVAVPAKREQFTT 636
>gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222816, DNA
sequence
Length = 668
Score = 134 bits (287), Expect = 7e-031
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -1 / +3
Query: 187 ESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQ 8
+S+ RSG+LTLGALESAVL KFRSLNHVPVWKDERPPSIRGGDDLK+YRIYPVGLTQRQ
Sbjct: 120 QSMLCRSGRLTLGALESAVLSKFRSLNHVPVWKDERPPSIRGGDDLKVYRIYPVGLTQRQ 299
Query: 7 AL 2
AL
Sbjct: 300 AL 305
Score = 125 bits (268), Expect = 3e-028
Identities = 51/57 (89%), Positives = 52/57 (91%)
Frame = -2 / +1
Query: 171 DRAS*HWEPWNLQCSVNLGPSTTFLYGRMKGHRVLEVGMT*NYTEFTQSV*HNVRLC 1
DRA * WEPWNLQCSVNLGPS TFLYGRMK HRVLEVGMT* YTEFT+SV*HNVRLC
Sbjct: 136 DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEVGMT*KYTEFTRSV*HNVRLC 306
Score = 121 bits (258), Expect = 7e-027
Identities = 51/57 (89%), Positives = 52/57 (91%)
Frame = +2 / -1
Query: 2 QSLTLC*TDWVNSV*FQVIPTSNTRWPFILPYRNVVEGPKFTEHCRFQGSQC*LARS 172
QSLTLC*TD VNSV FQVIPTSNTRW FILPYRNV+EGPKFTEHCRFQGSQ * ARS
Sbjct: 305 QSLTLC*TDRVNSVYFQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PARS 135
Score = 119 bits (254), Expect = 2e-026
Identities = 51/57 (89%), Positives = 52/57 (91%)
Frame = +1 / -3
Query: 1 TKPDVVLDRLGKFCIVSGHPHL*YSVAFHPSIQERG*GT*IYRALQIPRLPVLTGPI 171
TKPDVVLDR GKFCI+SGHPHL*YSV FHPSIQER *GT*IY ALQIPRLP LTGPI
Sbjct: 306 TKPDVVLDRPGKFCILSGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPI 136
Score = 119 bits (254), Expect = 2e-026
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = -3 / +2
Query: 173 EIGPVNTGSLGICSAR*I*VPQPRSCMEG*KATEY*RWG*PETIQNLPSRSNTTSGF 3
+IGPVN+GSLGICSA+*I*VPQ RSCMEG*K TEY*RWG*PE+IQNLP RSNTTSGF
Sbjct: 134 QIGPVNSGSLGICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PESIQNLPGRSNTTSGF 304
Score = 86.8 bits (183), Expect = 1e-016
Identities = 40/57 (70%), Positives = 41/57 (71%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*ILYSFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPSVNWPDL 173
KA*RCVRPTG*ILY+FR FHTGT LRDLNL STADSKAP VN PDL
Sbjct: 304 KA*RCVRPTG*ILYTFRSSPPLILGGLSSFHTGT*LRDLNLLSTADSKAPRVNRPDL 134
>gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901012, DNA
sequence
Length = 593
Score = 47.8 bits (98), Expect = 8e-005
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / +2
Query: 79 PPSIRGGDDLKLYRIYPVGLTQRQ 8
PPSIR D LK+Y+IYPVGLTQRQ
Sbjct: 239 PPSIRVEDGLKVYKIYPVGLTQRQ 310
Score = 43.7 bits (89), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1 / -1
Query: 10 DVVLDRLGKFCIVSGHPHL*YSV 78
D LD+LGKFCI+SG P L*YSV
Sbjct: 308 DAALDQLGKFCILSGRPQL*YSV 240
Score = 38.6 bits (78), Expect = 0.044
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / -2
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRW 79
LTL *T+WVN V FQ + SNTRW
Sbjct: 310 LTLR*TNWVNFVYFQAVLNSNTRW 239
Score = 35.0 bits (70), Expect = 0.56
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / -3
Query: 9 *RCVRPTG*ILYSFR 53
*RCVRPTG*ILY+FR
Sbjct: 309 *RCVRPTG*ILYTFR 265
Score = 34.5 bits (69), Expect = 0.76
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3 / +1
Query: 77 TEY*RWG*PETIQNLPSRSNTTS 9
TEY* G PE+IQNLPS SN S
Sbjct: 241 TEY*S*GRPESIQNLPSWSNAAS 309
Score = 34.5 bits (69), Expect = 0.76
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 78 HRVLEVGMT*NYTEFTQSV*HNVRL 4
HRVLE+ * YT+FTQ V* +VR+
Sbjct: 240 HRVLELRTA*KYTKFTQLV*RSVRI 314
>gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 741
Score = 47.8 bits (98), Expect = 8e-005
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 79 PPSIRGGDDLKLYRIYPVGLTQRQ 8
PPSIR D LK+Y+IYPVGLTQRQ
Sbjct: 271 PPSIRVEDGLKVYKIYPVGLTQRQ 342
Score = 43.7 bits (89), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1 / -3
Query: 10 DVVLDRLGKFCIVSGHPHL*YSV 78
D LD+LGKFCI+SG P L*YSV
Sbjct: 340 DAALDQLGKFCILSGRPQL*YSV 272
Score = 38.6 bits (78), Expect = 0.044
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / -1
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRW 79
LTL *T+WVN V FQ + SNTRW
Sbjct: 342 LTLR*TNWVNFVYFQAVLNSNTRW 271
Score = 35.0 bits (70), Expect = 0.56
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 9 *RCVRPTG*ILYSFR 53
*RCVRPTG*ILY+FR
Sbjct: 341 *RCVRPTG*ILYTFR 297
Score = 34.5 bits (69), Expect = 0.76
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2 / +2
Query: 78 HRVLEVGMT*NYTEFTQSV*HNVRL 4
HRVLE+ * YT+FTQ V* +VR+
Sbjct: 272 HRVLELRTA*KYTKFTQLV*RSVRI 346
Score = 34.5 bits (69), Expect = 0.76
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3 / +3
Query: 77 TEY*RWG*PETIQNLPSRSNTTS 9
TEY* G PE+IQNLPS SN S
Sbjct: 273 TEY*S*GRPESIQNLPSWSNAAS 341
>gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 664
Score = 47.8 bits (98), Expect = 8e-005
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / -2
Query: 79 PPSIRGGDDLKLYRIYPVGLTQRQ 8
PPSIR D LK+Y+IYPVGLTQRQ
Sbjct: 582 PPSIRVEDGLKVYKIYPVGLTQRQ 511
Score = 43.7 bits (89), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1 / +3
Query: 10 DVVLDRLGKFCIVSGHPHL*YSV 78
D LD+LGKFCI+SG P L*YSV
Sbjct: 513 DAALDQLGKFCILSGRPQL*YSV 581
Score = 38.6 bits (78), Expect = 0.044
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / +1
Query: 8 LTLC*TDWVNSV*FQVIPTSNTRW 79
LTL *T+WVN V FQ + SNTRW
Sbjct: 511 LTLR*TNWVNFVYFQAVLNSNTRW 582
Score = 35.0 bits (70), Expect = 0.56
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +2
Query: 9 *RCVRPTG*ILYSFR 53
*RCVRPTG*ILY+FR
Sbjct: 512 *RCVRPTG*ILYTFR 556
Score = 34.5 bits (69), Expect = 0.76
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3 / -1
Query: 77 TEY*RWG*PETIQNLPSRSNTTS 9
TEY* G PE+IQNLPS SN S
Sbjct: 580 TEY*S*GRPESIQNLPSWSNAAS 512
Score = 34.5 bits (69), Expect = 0.76
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2 / -3
Query: 78 HRVLEVGMT*NYTEFTQSV*HNVRL 4
HRVLE+ * YT+FTQ V* +VR+
Sbjct: 581 HRVLELRTA*KYTKFTQLV*RSVRI 507
>gb|CL147764.1|CL147764 104_327_10592619_116_31781_127 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592619, DNA
sequence
Length = 648
Score = 32.7 bits (65), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1 / +1
Query: 379 SDSFKALIDMAAVHSSCRLCIHIATKIH 296
S+SF + ++ SC LCIHIA++ H
Sbjct: 127 SESFSTALVISCRSYSCHLCIHIASRSH 210
>gb|CW100245.1|CW100245 104_467_11003996_116_34391_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003996, DNA
sequence
Length = 491
Score = 32.7 bits (65), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1 / +1
Query: 379 SDSFKALIDMAAVHSSCRLCIHIATKIH 296
S+SF + ++ SC LCIHIA++ H
Sbjct: 79 SESFSTALVISCRSYSCHLCIHIASRSH 162
>gb|CW227084.1|CW227084 104_665_11205227_148_37224_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205227, DNA
sequence
Length = 625
Score = 32.7 bits (65), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / +1
Query: 166 GQLTLGALESAVLGKFRSLNHV 101
GQLTLG E VLG F LN+V
Sbjct: 502 GQLTLGCFERLVLGIFEELNNV 567
>gb|CW227823.1|CW227823 104_667_11206022_148_37245_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206022, DNA
sequence
Length = 647
Score = 32.7 bits (65), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / +1
Query: 166 GQLTLGALESAVLGKFRSLNHV 101
GQLTLG E VLG F LN+V
Sbjct: 502 GQLTLGCFERLVLGIFEELNNV 567
>gb|CW229812.1|CW229812 104_671_11207515_148_37265_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207515, DNA
sequence
Length = 696
Score = 32.7 bits (65), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / +1
Query: 166 GQLTLGALESAVLGKFRSLNHV 101
GQLTLG E VLG F LN+V
Sbjct: 502 GQLTLGCFERLVLGIFEELNNV 567
>gb|CW231043.1|CW231043 104_680_11210917_148_37339_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210917, DNA
sequence
Length = 712
Score = 32.7 bits (65), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / +1
Query: 166 GQLTLGALESAVLGKFRSLNHV 101
GQLTLG E VLG F LN+V
Sbjct: 502 GQLTLGCFERLVLGIFEELNNV 567
>gb|CW231897.1|CW231897 104_681_11211370_148_37350_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211370, DNA
sequence
Length = 575
Score = 32.7 bits (65), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / +3
Query: 166 GQLTLGALESAVLGKFRSLNHV 101
GQLTLG E VLG F LN+V
Sbjct: 504 GQLTLGCFERLVLGIFEELNNV 569
>gb|CW276260.1|CW276260 104_749_11405393_116_35386_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405393, DNA
sequence
Length = 732
Score = 32.7 bits (65), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1 / -3
Query: 379 SDSFKALIDMAAVHSSCRLCIHIATKIH 296
S+SF + ++ SC LCIHIA++ H
Sbjct: 589 SESFSTALVISCRSYSCHLCIHIASRSH 506
>gb|CB924585.1|CB924585 ABA1_21_C08.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_21_C08_A012 5', mRNA sequence
Length = 641
Score = 32.2 bits (64), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2 / -3
Query: 246 PAKRGQFTTCLSEREGGLSQRAFI*DRAS*HWEP 145
PA+R + + + REG L QR I R + HW P
Sbjct: 108 PARRSRRSGLVQVREGDLEQRGGIAPRQAGHWAP 7
>gb|CL151625.1|CL151625 104_334_10779392_114_31361_176 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779392, DNA
sequence
Length = 762
Score = 31.3 bits (62), Expect = 7.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1 / -3
Query: 205 RGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSI 68
R R + S M T AL S+V+ RSL H+ W D P++
Sbjct: 478 RARCAASSSRMERKDRTRLALRSSVVQILRSLRHMAPWGDRTSPTL 341
>gb|CW036353.1|CW036353 104_267_10503712_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503712, DNA
sequence
Length = 611
Score = 31.3 bits (62), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2 / +2
Query: 200 PSLSDKQVVNCPLFAGTATRSICKFWSPF 286
PSLSD + + L G TR +C+F PF
Sbjct: 173 PSLSDIRKIYHILITGDTTRYVCEFSEPF 259
>gb|CW092364.1|CW092364 104_454_10999115_114_33036_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999115, DNA
sequence
Length = 742
Score = 31.3 bits (62), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2 / -1
Query: 200 PSLSDKQVVNCPLFAGTATRSICKFWSPF 286
PSLSD + + L G TR +C+F PF
Sbjct: 721 PSLSDIRKIYHILITGDTTRYVCEFSEPF 635
>gb|CW092365.1|CW092365 104_454_10999115_116_33040_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999115, DNA
sequence
Length = 712
Score = 31.3 bits (62), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2 / +2
Query: 200 PSLSDKQVVNCPLFAGTATRSICKFWSPF 286
PSLSD + + L G TR +C+F PF
Sbjct: 533 PSLSDIRKIYHILITGDTTRYVCEFSEPF 619
>gb|CW050806.1|CW050806 104_290_10514863_114_30195 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514863, DNA
sequence
Length = 695
Score = 30.9 bits (61), Expect = 9.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 159 NWPDLI*MLSDLNRPLSRIN 218
NWP I*+L LN PL+R+N
Sbjct: 581 NWPLAI*LLFGLNSPLNRLN 640
>gb|CW050807.1|CW050807 104_290_10514863_115_30205 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514863, DNA
sequence
Length = 597
Score = 30.9 bits (61), Expect = 9.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -3
Query: 159 NWPDLI*MLSDLNRPLSRIN 218
NWP I*+L LN PL+R+N
Sbjct: 244 NWPLAI*LLFGLNSPLNRLN 185
>gb|CW072224.1|CW072224 104_325_10592139_116_30541 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592139, DNA
sequence
Length = 639
Score = 30.9 bits (61), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1 / -1
Query: 277 PKFTNRPCSCSSKKGTVYHLFIRERGRFKSES 182
P F R CS + K+ YH +R R F S S
Sbjct: 204 PSFKRRRCSRAKKEYYTYHRTVRRRMSFSSSS 109
>gb|CW072493.1|CW072493 104_325_10592296_114_30538 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592296, DNA
sequence
Length = 512
Score = 30.9 bits (61), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1 / +2
Query: 349 AAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
++VH R I +I + RTP NRPC C+
Sbjct: 377 SSVHIKTRSRISSLVRIAMHAWRTPPSVNRPCVCA 481
>gb|CW095092.1|CW095092 104_460_11001092_148_34321_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001092, DNA
sequence
Length = 240
Score = 30.9 bits (61), Expect = 9.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1 / -3
Query: 331 CRLCIHIATKIHLKEERTPKFTNRPCSCSSKKGTVYHLF 215
C+LC ++ +++ L ++R + + PCS S G ++ F
Sbjct: 223 CKLCTYLTSRLALSQKRPNQASTSPCSPRSIIGCFHNGF 107
>gb|CW257182.1|CW257182 104_722_11227198_148_35149_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227198, DNA
sequence
Length = 558
Score = 30.9 bits (61), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1 / -3
Query: 349 AAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
++VH R I +I + RTP NRPC C+
Sbjct: 232 SSVHIKTRSRISSLVRIAMHAWRTPPSVNRPCVCA 128
>gb|CW343457.1|CW343457 104_845_11487432_116_36184_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487432, DNA
sequence
Length = 468
Score = 30.9 bits (61), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1 / +2
Query: 349 AAVHSSCRLCIHIATKIHLKEERTPKFTNRPCSCS 245
++VH R I +I + RTP NRPC C+
Sbjct: 293 SSVHIKTRSRISSLVRIAMHAWRTPPSVNRPCVCA 397
>gb|CD220185.1|CD220185 CCC1_65_H01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_65_H01_A007 5', mRNA sequence
Length = 632
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 355 WPFVHWKRGGVNGPEHTQHC 296
>gb|CD221295.1|CD221295 CCC1_74_C02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_C02_A007 5', mRNA sequence
Length = 659
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 390 WPFVHWKRGGVNGPEHTQHC 331
>gb|CD221399.1|CD221399 CCC1_54_F06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_F06_A007 5', mRNA sequence
Length = 660
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 387 WPFVHWKRGGVNGPEHTQHC 328
>gb|CF481064.1|CF481064 POL1_69_F04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_69_F04_A002 5', mRNA sequence
Length = 682
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 321 WPFVHWKRGGVNGPEHTQHC 262
>gb|CF481178.1|CF481178 POL1_70_A06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_A06_A002 5', mRNA sequence
Length = 747
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 394 WPFVHWKRGGVNGPEHTQHC 335
>gb|CF485288.1|CF485288 POL1_30_D02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_D02_A002 5', mRNA sequence
Length = 591
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 411 WPFVHWKRGGVNGPEHTQHC 352
>gb|CF486589.1|CF486589 POL1_38_C11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_C11_A002 5', mRNA sequence
Length = 769
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 355 WPFVHWKRGGVNGPEHTQHC 296
>gb|CF487935.1|CF487935 POL1_46_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_F12_A002 5', mRNA sequence
Length = 790
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 355 WPFVHWKRGGVNGPEHTQHC 296
>gb|CF489599.1|CF489599 POL1_58_C02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_58_C02_A002 5', mRNA sequence
Length = 609
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 358 WPFVHWKRGGVNGPEHTQHC 299
>gb|CF489923.1|CF489923 POL1_61_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_A05_A002 5', mRNA sequence
Length = 732
Score = 30.9 bits (61), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 77 WPFILPYRNVVEGPKFTEHC 136
WPF+ R V GP+ T+HC
Sbjct: 363 WPFVHWKRGGVNGPEHTQHC 304
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 485,472,084
Number of Sequences: 832831
Number of extensions: 6123074
Number of successful extensions: 149554
Number of sequences better than 10.0: 39
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 9397388832
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)