TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW332789.1|CW332789 104_830_11481600_116_36041_088 Sorgh... 172 1e-045
gb|CW145805.1|CW145805 104_538_11138659_148_34980_072 Sorgh... 172 1e-045
gb|CW332790.1|CW332790 104_830_11481600_148_36042_088 Sorgh... 172 1e-045
gb|CW265967.1|CW265967 104_735_11232172_148_35268_008 Sorgh... 159 2e-038
gb|CW407483.1|CW407483 fsbb001f100p20f0 Sorghum methylation... 143 1e-033
gb|CW319834.1|CW319834 104_812_11474693_116_35886_021 Sorgh... 116 2e-025
gb|CW319835.1|CW319835 104_812_11474693_148_35890_021 Sorgh... 116 2e-025
gb|CL152450.1|CL152450 104_335_10779964_114_31363_364 Sorgh... 111 3e-024
gb|CW255375.1|CW255375 104_720_11226201_116_35130_047 Sorgh... 111 3e-024
gb|CW312203.1|CW312203 104_802_11470633_148_35778_015 Sorgh... 111 3e-024
gb|CF073179.1|CF073179 FE1_28_F10.g1_A002 Iron-deficient se... 111 3e-024
gb|CX620904.1|CX620904 GABR1_54_F09.g1_A002 GA- or brassino... 111 3e-024
gb|BZ339139.1|BZ339139 ic30b02.g1 WGS-SbicolorF (JM107 adap... 109 2e-023
gb|CX613562.1|CX613562 GABR1_8_H04.g1_A002 GA- or brassinol... 105 4e-022
gb|CW476379.1|CW476379 fsbb001f233d16k0 Sorghum methylation... 102 3e-021
>gb|CW332789.1|CW332789 104_830_11481600_116_36041_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481600, DNA
sequence
Length = 726
Score = 172 bits (371), Expect(2) = 1e-045
Identities = 72/97 (74%), Positives = 75/97 (77%)
Frame = -3 / -1
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH LE ANPS DFC FRF FVERIWKESKGMENFATNLLIPEHCS
Sbjct: 651 SLQHALEITANPSKESDFCRMSENMSFRFML*GLFVERIWKESKGMENFATNLLIPEHCS 472
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSRTW*MXXXEIMV 69
GVNSFHHCMDR*ATIIATY+GTVSSRTW*M EI++
Sbjct: 471 GVNSFHHCMDR*ATIIATYKGTVSSRTW*MVGQEIIM 361
Score = 171 bits (367), Expect(2) = 4e-044
Identities = 74/96 (77%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS
Sbjct: 365 MISWPTIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 544
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRVCCXE 360
TN NLK QKS LLGFA S+ CC E
Sbjct: 545 TNNPYNMNLKLIFSDILQKSLSLLGFAVISKACCKE 652
Score = 145 bits (312), Expect = 2e-034
Identities = 62/97 (63%), Positives = 67/97 (69%)
Frame = +3 / +1
Query: 69 HHDLXXXHLPCS*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALFPDP 248
H+DL HLPCS*RN S VCSYDSGLPIHTMVEA+H RAVL YQQV +VFH F LFPDP
Sbjct: 361 HYDLLANHLPCS*RNSSLVCSYDSGLPIHTMVEAIHPRAVLWYQQVCGKVFHSFTLFPDP 540
Query: 249 LYKXXXXXEPEXXXXXXXTEIAXXAGVCXXL*GVLXG 359
LYK EP+ TEIA GVC L* +L G
Sbjct: 541 LYKQSLQHEPKAHILRHPTEIALLTGVCSYL*SMLQG 651
Score = 137 bits (294), Expect = 6e-032
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -2 / -3
Query: 360 LLAAHPRGXCKPQQXXRFLXXXXXXXLQVXXVXXVCREDLEREQRDGKLRYELVDTGALL 181
LLA R CKPQ RFL L V V VCREDLERE R+GKL ++LVDT ALL
Sbjct: 652 LLATCFRDNCKPQ*GERFL*DV*EYEL*VHVVRIVCREDLERE*RNGKLCHKLVDTRALL 473
Query: 180 WREQLPPLYG*VGHYHSYIQGNRFFKNMVDXXXRDHGG 67
W E LPPLYG*VGHYHSYIQGN FFKNMVD RDH G
Sbjct: 472 WGE*LPPLYG*VGHYHSYIQGNCFFKNMVDGWPRDHNG 359
Score = 134 bits (288), Expect = 4e-031
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -1 / -2
Query: 361 SPXSTP*RXLQTPAXXAISVXXXXXXXSGSXCXXCL*RGSGKRAKGWKTSLRTC*YRSTA 182
SP + *R LQTP AISV GS C CL*RGSGKR K WKT +TC*Y+STA
Sbjct: 653 SPCNML*R*LQTPVRRAISVGCLRI*ALGSCCKDCL*RGSGKRVKEWKTLPQTC*YQSTA 474
Query: 181 LA*TASTIVWIGRPLS*LHTGEPFLQEHGRXXXKRSWW 68
L * ASTIVWIGRPLS*LHT E FLQEHGR KRS W
Sbjct: 473 LG*IASTIVWIGRPLS*LHTRELFLQEHGRWLAKRS*W 360
Score = 30.4 bits (60), Expect(2) = 1e-045
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 52 ELKNTPNVLPNL 17
+LKNTPNVLPNL
Sbjct: 356 DLKNTPNVLPNL 321
Score = 27.2 bits (53), Expect(2) = 4e-044
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 18 RLGRTFGVFFSS 53
RLG+TFGVFF S
Sbjct: 322 RLGKTFGVFFRS 357
>gb|CW145805.1|CW145805 104_538_11138659_148_34980_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138659, DNA
sequence
Length = 697
Score = 172 bits (371), Expect(2) = 1e-045
Identities = 72/97 (74%), Positives = 75/97 (77%)
Frame = -3 / +2
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH LE ANPS DFC FRF FVERIWKESKGMENFATNLLIPEHCS
Sbjct: 98 SLQHALEITANPSKESDFCRMSENMSFRFML*GLFVERIWKESKGMENFATNLLIPEHCS 277
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSRTW*MXXXEIMV 69
GVNSFHHCMDR*ATIIATY+GTVSSRTW*M EI++
Sbjct: 278 GVNSFHHCMDR*ATIIATYKGTVSSRTW*MVGQEIIM 388
Score = 171 bits (367), Expect(2) = 4e-044
Identities = 74/96 (77%), Positives = 75/96 (78%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS
Sbjct: 384 MISWPTIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 205
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRVCCXE 360
TN NLK QKS LLGFA S+ CC E
Sbjct: 204 TNNPYNMNLKLIFSDILQKSLSLLGFAVISKACCKE 97
Score = 145 bits (312), Expect = 2e-034
Identities = 62/97 (63%), Positives = 67/97 (69%)
Frame = +3 / -1
Query: 69 HHDLXXXHLPCS*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALFPDP 248
H+DL HLPCS*RN S VCSYDSGLPIHTMVEA+H RAVL YQQV +VFH F LFPDP
Sbjct: 388 HYDLLANHLPCS*RNSSLVCSYDSGLPIHTMVEAIHPRAVLWYQQVCGKVFHSFTLFPDP 209
Query: 249 LYKXXXXXEPEXXXXXXXTEIAXXAGVCXXL*GVLXG 359
LYK EP+ TEIA GVC L* +L G
Sbjct: 208 LYKQSLQHEPKAHILRHPTEIALLTGVCSYL*SMLQG 98
Score = 137 bits (294), Expect = 6e-032
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -2 / +1
Query: 360 LLAAHPRGXCKPQQXXRFLXXXXXXXLQVXXVXXVCREDLEREQRDGKLRYELVDTGALL 181
LLA R CKPQ RFL L V V VCREDLERE R+GKL ++LVDT ALL
Sbjct: 97 LLATCFRDNCKPQ*GERFL*DV*EYEL*VHVVRIVCREDLERE*RNGKLCHKLVDTRALL 276
Query: 180 WREQLPPLYG*VGHYHSYIQGNRFFKNMVDXXXRDHGG 67
W E LPPLYG*VGHYHSYIQGN FFKNMVD RDH G
Sbjct: 277 WGE*LPPLYG*VGHYHSYIQGNCFFKNMVDGWPRDHNG 390
Score = 134 bits (288), Expect = 4e-031
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -1 / +3
Query: 361 SPXSTP*RXLQTPAXXAISVXXXXXXXSGSXCXXCL*RGSGKRAKGWKTSLRTC*YRSTA 182
SP + *R LQTP AISV GS C CL*RGSGKR K WKT +TC*Y+STA
Sbjct: 96 SPCNML*R*LQTPVRRAISVGCLRI*ALGSCCKDCL*RGSGKRVKEWKTLPQTC*YQSTA 275
Query: 181 LA*TASTIVWIGRPLS*LHTGEPFLQEHGRXXXKRSWW 68
L * ASTIVWIGRPLS*LHT E FLQEHGR KRS W
Sbjct: 276 LG*IASTIVWIGRPLS*LHTRELFLQEHGRWLAKRS*W 389
Score = 30.4 bits (60), Expect(2) = 1e-045
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / +3
Query: 52 ELKNTPNVLPNL 17
+LKNTPNVLPNL
Sbjct: 393 DLKNTPNVLPNL 428
Score = 27.2 bits (53), Expect(2) = 4e-044
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -1
Query: 18 RLGRTFGVFFSS 53
RLG+TFGVFF S
Sbjct: 427 RLGKTFGVFFRS 392
>gb|CW332790.1|CW332790 104_830_11481600_148_36042_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481600, DNA
sequence
Length = 666
Score = 172 bits (371), Expect(2) = 1e-045
Identities = 72/97 (74%), Positives = 75/97 (77%)
Frame = -3 / +1
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH LE ANPS DFC FRF FVERIWKESKGMENFATNLLIPEHCS
Sbjct: 229 SLQHALEITANPSKESDFCRMSENMSFRFML*GLFVERIWKESKGMENFATNLLIPEHCS 408
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSRTW*MXXXEIMV 69
GVNSFHHCMDR*ATIIATY+GTVSSRTW*M EI++
Sbjct: 409 GVNSFHHCMDR*ATIIATYKGTVSSRTW*MVGQEIIM 519
Score = 171 bits (367), Expect(2) = 4e-044
Identities = 74/96 (77%), Positives = 75/96 (78%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS
Sbjct: 515 MISWPTIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 336
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRVCCXE 360
TN NLK QKS LLGFA S+ CC E
Sbjct: 335 TNNPYNMNLKLIFSDILQKSLSLLGFAVISKACCKE 228
Score = 145 bits (312), Expect = 2e-034
Identities = 62/97 (63%), Positives = 67/97 (69%)
Frame = +3 / -1
Query: 69 HHDLXXXHLPCS*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALFPDP 248
H+DL HLPCS*RN S VCSYDSGLPIHTMVEA+H RAVL YQQV +VFH F LFPDP
Sbjct: 519 HYDLLANHLPCS*RNSSLVCSYDSGLPIHTMVEAIHPRAVLWYQQVCGKVFHSFTLFPDP 340
Query: 249 LYKXXXXXEPEXXXXXXXTEIAXXAGVCXXL*GVLXG 359
LYK EP+ TEIA GVC L* +L G
Sbjct: 339 LYKQSLQHEPKAHILRHPTEIALLTGVCSYL*SMLQG 229
Score = 137 bits (294), Expect = 6e-032
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -2 / +3
Query: 360 LLAAHPRGXCKPQQXXRFLXXXXXXXLQVXXVXXVCREDLEREQRDGKLRYELVDTGALL 181
LLA R CKPQ RFL L V V VCREDLERE R+GKL ++LVDT ALL
Sbjct: 228 LLATCFRDNCKPQ*GERFL*DV*EYEL*VHVVRIVCREDLERE*RNGKLCHKLVDTRALL 407
Query: 180 WREQLPPLYG*VGHYHSYIQGNRFFKNMVDXXXRDHGG 67
W E LPPLYG*VGHYHSYIQGN FFKNMVD RDH G
Sbjct: 408 WGE*LPPLYG*VGHYHSYIQGNCFFKNMVDGWPRDHNG 521
Score = 134 bits (288), Expect = 4e-031
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -1 / +2
Query: 361 SPXSTP*RXLQTPAXXAISVXXXXXXXSGSXCXXCL*RGSGKRAKGWKTSLRTC*YRSTA 182
SP + *R LQTP AISV GS C CL*RGSGKR K WKT +TC*Y+STA
Sbjct: 227 SPCNML*R*LQTPVRRAISVGCLRI*ALGSCCKDCL*RGSGKRVKEWKTLPQTC*YQSTA 406
Query: 181 LA*TASTIVWIGRPLS*LHTGEPFLQEHGRXXXKRSWW 68
L * ASTIVWIGRPLS*LHT E FLQEHGR KRS W
Sbjct: 407 LG*IASTIVWIGRPLS*LHTRELFLQEHGRWLAKRS*W 520
Score = 30.4 bits (60), Expect(2) = 1e-045
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / +2
Query: 52 ELKNTPNVLPNL 17
+LKNTPNVLPNL
Sbjct: 524 DLKNTPNVLPNL 559
Score = 27.2 bits (53), Expect(2) = 4e-044
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -1
Query: 18 RLGRTFGVFFSS 53
RLG+TFGVFF S
Sbjct: 558 RLGKTFGVFFRS 523
>gb|CW265967.1|CW265967 104_735_11232172_148_35268_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232172, DNA
sequence
Length = 678
Score = 159 bits (341), Expect = 2e-038
Identities = 66/86 (76%), Positives = 67/86 (77%)
Frame = -3 / -1
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH LE ANPS DFC FRF FVERIWKESKGMENFATNLLIPEHCS
Sbjct: 258 SLQHALEITANPSKESDFCRMSENMSFRFML*GLFVERIWKESKGMENFATNLLIPEHCS 79
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSR 102
GVNSFHHCMDR*ATIIATY+GTVSSR
Sbjct: 78 GVNSFHHCMDR*ATIIATYKGTVSSR 1
Score = 156 bits (335), Expect = 1e-037
Identities = 67/86 (77%), Positives = 68/86 (79%)
Frame = +1 / +2
Query: 103 LEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILSTNXXXXXNLK 282
LEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILSTN NLK
Sbjct: 2 LEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILSTNNPYNMNLK 181
Query: 283 XXXXXXXQKSXXLLGFAXASRVCCXE 360
QKS LLGFA S+ CC E
Sbjct: 182 LIFSDILQKSLSLLGFAVISKACCKE 259
Score = 124 bits (266), Expect = 5e-028
Identities = 55/86 (63%), Positives = 59/86 (68%)
Frame = +3 / +1
Query: 102 S*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALFPDPLYKXXXXXEPE 281
S*RN S VCSYDSGLPIHTMVEA+H RAVL YQQV +VFH F LFPDPLYK EP+
Sbjct: 1 S*RNSSLVCSYDSGLPIHTMVEAIHPRAVLWYQQVCGKVFHSFTLFPDPLYKQSLQHEPK 180
Query: 282 XXXXXXXTEIAXXAGVCXXL*GVLXG 359
TEIA GVC L* +L G
Sbjct: 181 AHILRHPTEIALLTGVCSYL*SMLQG 258
Score = 118 bits (253), Expect = 3e-026
Identities = 57/86 (66%), Positives = 60/86 (69%)
Frame = -2 / -3
Query: 360 LLAAHPRGXCKPQQXXRFLXXXXXXXLQVXXVXXVCREDLEREQRDGKLRYELVDTGALL 181
LLA R CKPQ RFL L V V VCREDLERE R+GKL ++LVDT ALL
Sbjct: 259 LLATCFRDNCKPQ*GERFL*DV*EYEL*VHVVRIVCREDLERE*RNGKLCHKLVDTRALL 80
Query: 180 WREQLPPLYG*VGHYHSYIQGNRFFK 103
W E LPPLYG*VGHYHSYIQGN FFK
Sbjct: 79 WGE*LPPLYG*VGHYHSYIQGNCFFK 2
Score = 115 bits (246), Expect = 3e-025
Identities = 57/86 (66%), Positives = 60/86 (69%)
Frame = -1 / -2
Query: 361 SPXSTP*RXLQTPAXXAISVXXXXXXXSGSXCXXCL*RGSGKRAKGWKTSLRTC*YRSTA 182
SP + *R LQTP AISV GS C CL*RGSGKR K WKT +TC*Y+STA
Sbjct: 260 SPCNML*R*LQTPVRRAISVGCLRI*ALGSCCKDCL*RGSGKRVKEWKTLPQTC*YQSTA 81
Query: 181 LA*TASTIVWIGRPLS*LHTGEPFLQ 104
L * ASTIVWIGRPLS*LHT E FLQ
Sbjct: 80 LG*IASTIVWIGRPLS*LHTRELFLQ 3
>gb|CW407483.1|CW407483 fsbb001f100p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100p20, DNA
sequence
Length = 601
Score = 143 bits (306), Expect = 1e-033
Identities = 64/96 (66%), Positives = 66/96 (68%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS IYHVLEE VPLYVAMIV LSIQWWKLFTP+QCSGI KFVAKFSIPLLSFQILS
Sbjct: 597 MISWPTIYHVLEEPVPLYVAMIVPSLSIQWWKLFTPDQCSGITKFVAKFSIPLLSFQILS 418
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRVCCXE 360
LK QKS LLGF S+ C E
Sbjct: 417 PTNPSTMTLKLIFSAILQKSLSLLGFPVISKPCSKE 310
Score = 136 bits (292), Expect = 1e-031
Identities = 60/97 (61%), Positives = 65/97 (67%)
Frame = -3 / +2
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S +H LE NPS DF FR ERIWKESKGMENFATNL+IPEH S
Sbjct: 311 SLEHGLEITGNPSKESDFWRMAENMSFRVMVEGLVGERIWKESKGMENFATNLVIPEHWS 490
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSRTW*MXXXEIMV 69
GVNSFHH MDR TIIATY+GT SSRTW*M EI++
Sbjct: 491 GVNSFHHWMDREGTIIATYKGTGSSRTW*MVGQEIIM 601
Score = 115 bits (246), Expect = 3e-025
Identities = 51/97 (52%), Positives = 57/97 (58%)
Frame = +3 / -1
Query: 69 HHDLXXXHLPCS*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALFPDP 248
H+DL HLPCS*R S VCSYDS LPIH MVEA+H R VL Y QV +VFH F LFPDP
Sbjct: 601 HYDLLANHLPCS*RTSSLVCSYDSALPIHPMVEAIHPRPVLWYHQVCGKVFHSFTLFPDP 422
Query: 249 LYKXXXXXEPEXXXXXXXTEIAXXAGVCXXL*GVLXG 359
L +P+ EIA GV L* + G
Sbjct: 421 LSNQSFHHDPKAHILSHPPEIALLTGVSSYL*TMFQG 311
Score = 100 bits (214), Expect = 7e-021
Identities = 44/60 (73%), Positives = 48/60 (80%)
Frame = -2 / +1
Query: 252 REDLEREQRDGKLRYELVDTGALLWREQLPPLYG*VGHYHSYIQGNRFFKNMVDXXXRDH 73
REDLERE R+GKL ++L DT AL+W E LPPL G* GHYHSYIQGN FFKNMVD RDH
Sbjct: 418 REDLERE*RNGKLCHKLGDTRALVWGE*LPPLDG*GGHYHSYIQGNWFFKNMVDGWPRDH 597
>gb|CW319834.1|CW319834 104_812_11474693_116_35886_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474693, DNA
sequence
Length = 665
Score = 116 bits (247), Expect = 2e-025
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL VPLYVAM +AY S++WW++FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 385 MISGNDVYTVLTAMVPLYVAMFLAYGSVRWWRIFTPDQCSGINRFVAIFAVPLLSFHFIS 564
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRV 348
TN NL+ QK L G A SR+
Sbjct: 565 TNNPYAMNLRFLAADTLQKLLVLAGLAVWSRL 660
>gb|CW319835.1|CW319835 104_812_11474693_148_35890_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474693, DNA
sequence
Length = 687
Score = 116 bits (247), Expect = 2e-025
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +1 / -2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL VPLYVAM +AY S++WW++FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 545 MISGNDVYTVLTAMVPLYVAMFLAYGSVRWWRIFTPDQCSGINRFVAIFAVPLLSFHFIS 366
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRV 348
TN NL+ QK L G A SR+
Sbjct: 365 TNNPYAMNLRFLAADTLQKLLVLAGLAVWSRL 270
>gb|CL152450.1|CL152450 104_335_10779964_114_31363_364 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779964, DNA
sequence
Length = 624
Score = 111 bits (238), Expect = 3e-024
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW++F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 171 MITATDFYHVMTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVALFAVPLLSFHFIS 350
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 351 TNNPYTMNLRFIAADTLQK 407
>gb|CW255375.1|CW255375 104_720_11226201_116_35130_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226201, DNA
sequence
Length = 687
Score = 111 bits (238), Expect = 3e-024
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW++F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 289 MITATDFYHVMTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVALFAVPLLSFHFIS 468
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 469 TNNPYTMNLRFIAADTLQK 525
>gb|CW312203.1|CW312203 104_802_11470633_148_35778_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470633, DNA
sequence
Length = 629
Score = 111 bits (238), Expect = 3e-024
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW++F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 289 MITATDFYHVMTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVALFAVPLLSFHFIS 468
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 469 TNNPYTMNLRFIAADTLQK 525
>gb|CF073179.1|CF073179 FE1_28_F10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_28_F10_A002 5', mRNA sequence
Length = 652
Score = 111 bits (238), Expect = 3e-024
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW++F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 282 MITATDFYHVMTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVALFAVPLLSFHFIS 461
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 462 TNNPYTMNLRFIAADTLQK 518
>gb|CX620904.1|CX620904 GABR1_54_F09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_54_F09_A002 5', mRNA sequence
Length = 595
Score = 111 bits (238), Expect = 3e-024
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW++F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 238 MITATDFYHVMTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVALFAVPLLSFHFIS 417
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 418 TNNPYTMNLRFIAADTLQK 474
>gb|BZ339139.1|BZ339139 ic30b02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic30b02 5', DNA sequence
Length = 580
Score = 109 bits (232), Expect = 2e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +Y VL VPLYVAM +AY S++WW++FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 331 MISGNDVYTVLTAMVPLYVAMFLAYGSVRWWRIFTPDQCSGINRFVAIFAVPLLSFHFIS 510
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 511 TNNPYAMNLRFLAADTLQK 567
>gb|CX613562.1|CX613562 GABR1_8_H04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_H04_A002 5', mRNA sequence
Length = 769
Score = 105 bits (223), Expect = 4e-022
Identities = 40/79 (50%), Positives = 54/79 (68%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+A S++WW++F+P+QCSGIN+FVA ++PLLSF +S
Sbjct: 241 MITATDFYHVMTAVVPLYVAMILACGSVRWWRIFSPDQCSGINRFVALLAVPLLSFHFIS 420
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 421 TNNPYTMNLRFIAADTLQK 477
>gb|CW476379.1|CW476379 fsbb001f233d16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233d16, DNA
sequence
Length = 549
Score = 102 bits (217), Expect = 3e-021
Identities = 43/91 (47%), Positives = 57/91 (62%)
Frame = +1 / -1
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MIS +Y VL VPLYVAM++AY S++WW + TP+QC+GIN+FVA F++PLLSF
Sbjct: 291 PPAAMISWHDLYTVLCAVVPLYVAMVLAYGSVRWWGVLTPDQCAGINRFVAVFAVPLLSF 112
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLLGFA 333
+ST+ NL+ QK L A
Sbjct: 111 HCISTSDPYVMNLRFIAADTLQKVLVLAALA 19
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 363,039,131
Number of Sequences: 832831
Number of extensions: 3848911
Number of successful extensions: 160866
Number of sequences better than 1.0e-020: 16
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 8249227900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)