TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorgh... 167 8e-057
gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorgh... 167 1e-056
gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorgh... 167 1e-056
gb|CL157591.1|CL157591 104_345_10783695_114_31477_255 Sorgh... 156 2e-053
gb|BF586839.1|BF586839 FM1_30_H12.g1_A003 Floral-Induced Me... 125 8e-031
gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stres... 77 6e-021
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 77 6e-021
>gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943572, DNA
sequence
Length = 668
Score = 167 bits (360), Expect(5) = 8e-057
Identities = 68/78 (87%), Positives = 70/78 (89%)
Frame = +2 / -1
Query: 260 LPHSQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWR 439
LPHS SKPQTSRTGPSNLVA GLTRTHKR++MDASS D TTT VGTL CLPITPLRNGWR
Sbjct: 326 LPHSHSKPQTSRTGPSNLVANGLTRTHKRDNMDASSTDKTTTMVGTLLCLPITPLRNGWR 147
Query: 440 WRTTQKEKNSLPSSGPQA 493
WR TQKEKNSLP SGPQA
Sbjct: 146 WRITQKEKNSLPISGPQA 93
Score = 138 bits (297), Expect(6) = 4e-047
Identities = 56/78 (71%), Positives = 60/78 (76%)
Frame = -2 / +1
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPTXXXXXXXXXXXXXXXXXVRVSPFAT 313
AWGPL+GKLFFSFWV+LHLHPFLKGVIG+Q RVPT VRVSPFAT
Sbjct: 94 AWGPLIGKLFFSFWVILHLHPFLKGVIGKQSRVPTIVVVLSVLLASILSLLWVRVSPFAT 273
Query: 312 KFDGPVLEVCGLDCE*GR 259
KFDGPVLEVCGL+CE*GR
Sbjct: 274 KFDGPVLEVCGLECE*GR 327
Score = 127 bits (271), Expect(3) = 3e-034
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = +1 / -3
Query: 271 TIQATDLQNRSIKLGGEGAHPDPQKREYGCQ*H*QHNDNGRHPALPADHALEERVEVEDD 450
T Q T+L N +IKLGGE + DPQKR+YGC *H*Q+N+NGRHPAL A+HALEERVE+ED+
Sbjct: 315 TFQTTNL*NWAIKLGGERTYTDPQKRQYGC**H*QNNNNGRHPALLANHALEERVEMEDN 136
Query: 451 PEGEEQLAEQRAPGXXPAR 507
PEGEEQLA Q PG R
Sbjct: 135 PEGEEQLANQWPPGFVSIR 79
Score = 78.5 bits (165), Expect(5) = 9e-022
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = -1 / +3
Query: 415 DRQAGQGADRCRCAVNATGIHTLSFVGPGEPLRHQV*WTCSGGLWLGL*VR 263
D QA QGAD C C V+AT IH +SFVGP + +RHQV*W S GLW G+*+R
Sbjct: 171 DWQAEQGADHCCCFVSATSIHIVSFVGPCKSVRHQV*WPSSRGLWFGM*MR 323
Score = 46.4 bits (95), Expect(5) = 8e-057
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / -2
Query: 96 INIKHRFTKTYANQRSPKNIENV 164
I + H FTKTYANQRSPKNIEN+
Sbjct: 484 IFLNHYFTKTYANQRSPKNIENL 416
Score = 32.7 bits (65), Expect(5) = 8e-057
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2 / -3
Query: 32 LYCACLNIYNSHFSILYF 85
+YCACLNIYN++ +I F
Sbjct: 567 VYCACLNIYNNNNTIFSF 514
Score = 31.8 bits (63), Expect(3) = 3e-034
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / -3
Query: 50 NIYNSHFSILYFPPAHKH 103
N N+ FS YFPP HKH
Sbjct: 540 NNNNTIFSFFYFPPVHKH 487
Score = 31.3 bits (62), Expect(6) = 4e-047
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / +3
Query: 160 FSMFFGDR*LA*VLVK 113
FS+FFGDR LA*VLVK
Sbjct: 420 FSIFFGDRWLA*VLVK 467
Score = 30.9 bits (61), Expect(6) = 4e-047
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +3
Query: 62 CCRY*DRHNR 33
CCRY*DRHNR
Sbjct: 537 CCRY*DRHNR 566
Score = 27.2 bits (53), Expect(5) = 9e-022
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 79 ENGEVTVVDIETGTIE 32
E+ V VVDIETGTI+
Sbjct: 520 EDSVVVVVDIETGTID 567
Score = 26.7 bits (52), Expect(6) = 4e-047
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 193 RGFYSFVSYSTF 158
RG YSF+SYS F
Sbjct: 388 RGLYSFISYSNF 423
Score = 26.3 bits (51), Expect(6) = 4e-047
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 101 VYEQEGNREWRSDCC 57
VYEQE NR+ R CC
Sbjct: 489 VYEQEENRKRRR*CC 533
Score = 25.8 bits (50), Expect(5) = 8e-057
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -2
Query: 191 SHYSSTGETQNLFP 232
SHYSST + NLFP
Sbjct: 388 SHYSSTTKMINLFP 347
Score = 24.9 bits (48), Expect(3) = 3e-034
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / -3
Query: 115 SLKPTLISGHQRT*K 159
SLKP L S HQR *K
Sbjct: 465 SLKPMLTSDHQRI*K 421
Score = 24.4 bits (47), Expect(5) = 9e-022
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 146 W*PLISVGFSEAV 108
W* L+S+GFSE +
Sbjct: 434 W*SLVSIGFSEVM 472
Score = 23.1 bits (44), Expect(6) = 4e-047
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +2
Query: 241 SLLRE*VLSFPSARVVR 191
SL R+*+ F SARVVR
Sbjct: 338 SLYRK*IYHFCSARVVR 388
Score = 22.6 bits (43), Expect(5) = 9e-022
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 192 EGSILSLAIQRF 157
EGSILSL IQ F
Sbjct: 389 EGSILSLVIQIF 424
Score = 22.6 bits (43), Expect(5) = 8e-057
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 158 KR*IANERIEPS 193
K *I NERIEPS
Sbjct: 423 KI*ITNERIEPS 388
Score = 21.7 bits (41), Expect(5) = 9e-022
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2 / +3
Query: 234 LGNRF*VSPVLE**EGSI 181
+GNRF + VLE**E ++
Sbjct: 345 IGNRFIIFVVLE**ERAL 398
>gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943572, DNA
sequence
Length = 704
Score = 167 bits (360), Expect(5) = 1e-056
Identities = 68/78 (87%), Positives = 70/78 (89%)
Frame = +2 / -3
Query: 260 LPHSQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWR 439
LPHS SKPQTSRTGPSNLVA GLTRTHKR++MDASS D TTT VGTL CLPITPLRNGWR
Sbjct: 327 LPHSHSKPQTSRTGPSNLVANGLTRTHKRDNMDASSTDKTTTMVGTLLCLPITPLRNGWR 148
Query: 440 WRTTQKEKNSLPSSGPQA 493
WR TQKEKNSLP SGPQA
Sbjct: 147 WRITQKEKNSLPISGPQA 94
Score = 138 bits (297), Expect(6) = 6e-047
Identities = 56/78 (71%), Positives = 60/78 (76%)
Frame = -2 / +2
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPTXXXXXXXXXXXXXXXXXVRVSPFAT 313
AWGPL+GKLFFSFWV+LHLHPFLKGVIG+Q RVPT VRVSPFAT
Sbjct: 95 AWGPLIGKLFFSFWVILHLHPFLKGVIGKQSRVPTIVVVLSVLLASILSLLWVRVSPFAT 274
Query: 312 KFDGPVLEVCGLDCE*GR 259
KFDGPVLEVCGL+CE*GR
Sbjct: 275 KFDGPVLEVCGLECE*GR 328
Score = 127 bits (271), Expect(3) = 3e-034
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = +1 / -2
Query: 271 TIQATDLQNRSIKLGGEGAHPDPQKREYGCQ*H*QHNDNGRHPALPADHALEERVEVEDD 450
T Q T+L N +IKLGGE + DPQKR+YGC *H*Q+N+NGRHPAL A+HALEERVE+ED+
Sbjct: 316 TFQTTNL*NWAIKLGGERTYTDPQKRQYGC**H*QNNNNGRHPALLANHALEERVEMEDN 137
Query: 451 PEGEEQLAEQRAPGXXPAR 507
PEGEEQLA Q PG R
Sbjct: 136 PEGEEQLANQWPPGFVSIR 80
Score = 78.5 bits (165), Expect(5) = 1e-021
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = -1 / +1
Query: 415 DRQAGQGADRCRCAVNATGIHTLSFVGPGEPLRHQV*WTCSGGLWLGL*VR 263
D QA QGAD C C V+AT IH +SFVGP + +RHQV*W S GLW G+*+R
Sbjct: 172 DWQAEQGADHCCCFVSATSIHIVSFVGPCKSVRHQV*WPSSRGLWFGM*MR 324
Score = 46.4 bits (95), Expect(5) = 1e-056
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / -1
Query: 96 INIKHRFTKTYANQRSPKNIENV 164
I + H FTKTYANQRSPKNIEN+
Sbjct: 485 IFLNHYFTKTYANQRSPKNIENL 417
Score = 32.7 bits (65), Expect(5) = 1e-056
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2 / -2
Query: 32 LYCACLNIYNSHFSILYF 85
+YCACLNIYN++ +I F
Sbjct: 568 VYCACLNIYNNNNTIFSF 515
Score = 31.8 bits (63), Expect(3) = 3e-034
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / -2
Query: 50 NIYNSHFSILYFPPAHKH 103
N N+ FS YFPP HKH
Sbjct: 541 NNNNTIFSFFYFPPVHKH 488
Score = 31.3 bits (62), Expect(6) = 6e-047
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / +1
Query: 160 FSMFFGDR*LA*VLVK 113
FS+FFGDR LA*VLVK
Sbjct: 421 FSIFFGDRWLA*VLVK 468
Score = 30.9 bits (61), Expect(6) = 6e-047
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +1
Query: 62 CCRY*DRHNR 33
CCRY*DRHNR
Sbjct: 538 CCRY*DRHNR 567
Score = 27.2 bits (53), Expect(5) = 1e-021
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 79 ENGEVTVVDIETGTIE 32
E+ V VVDIETGTI+
Sbjct: 521 EDSVVVVVDIETGTID 568
Score = 26.7 bits (52), Expect(6) = 6e-047
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 193 RGFYSFVSYSTF 158
RG YSF+SYS F
Sbjct: 389 RGLYSFISYSNF 424
Score = 26.3 bits (51), Expect(6) = 6e-047
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / +1
Query: 101 VYEQEGNREWRSDCC 57
VYEQE NR+ R CC
Sbjct: 490 VYEQEENRKRRR*CC 534
Score = 25.8 bits (50), Expect(5) = 1e-056
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 191 SHYSSTGETQNLFP 232
SHYSST + NLFP
Sbjct: 389 SHYSSTTKMINLFP 348
Score = 24.9 bits (48), Expect(3) = 3e-034
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 115 SLKPTLISGHQRT*K 159
SLKP L S HQR *K
Sbjct: 466 SLKPMLTSDHQRI*K 422
Score = 24.4 bits (47), Expect(5) = 1e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / +3
Query: 146 W*PLISVGFSEAV 108
W* L+S+GFSE +
Sbjct: 435 W*SLVSIGFSEVM 473
Score = 23.1 bits (44), Expect(6) = 6e-047
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 241 SLLRE*VLSFPSARVVR 191
SL R+*+ F SARVVR
Sbjct: 339 SLYRK*IYHFCSARVVR 389
Score = 22.6 bits (43), Expect(5) = 1e-021
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 192 EGSILSLAIQRF 157
EGSILSL IQ F
Sbjct: 390 EGSILSLVIQIF 425
Score = 22.6 bits (43), Expect(5) = 1e-056
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / -2
Query: 158 KR*IANERIEPS 193
K *I NERIEPS
Sbjct: 424 KI*ITNERIEPS 389
Score = 21.7 bits (41), Expect(5) = 1e-021
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2 / +1
Query: 234 LGNRF*VSPVLE**EGSI 181
+GNRF + VLE**E ++
Sbjct: 346 IGNRFIIFVVLE**ERAL 399
>gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783695, DNA
sequence
Length = 738
Score = 167 bits (360), Expect(5) = 1e-056
Identities = 68/78 (87%), Positives = 70/78 (89%)
Frame = +2 / -2
Query: 260 LPHSQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWR 439
LPHS SKPQTSRTGPSNLVA GLTRTHKR++MDASS D TTT VGTL CLPITPLRNGWR
Sbjct: 440 LPHSHSKPQTSRTGPSNLVANGLTRTHKRDNMDASSTDKTTTMVGTLLCLPITPLRNGWR 261
Query: 440 WRTTQKEKNSLPSSGPQA 493
WR TQKEKNSLP SGPQA
Sbjct: 260 WRITQKEKNSLPISGPQA 207
Score = 138 bits (297), Expect(6) = 7e-047
Identities = 56/78 (71%), Positives = 60/78 (76%)
Frame = -2 / +1
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPTXXXXXXXXXXXXXXXXXVRVSPFAT 313
AWGPL+GKLFFSFWV+LHLHPFLKGVIG+Q RVPT VRVSPFAT
Sbjct: 208 AWGPLIGKLFFSFWVILHLHPFLKGVIGKQSRVPTIVVVLSVLLASILSLLWVRVSPFAT 387
Query: 312 KFDGPVLEVCGLDCE*GR 259
KFDGPVLEVCGL+CE*GR
Sbjct: 388 KFDGPVLEVCGLECE*GR 441
Score = 127 bits (271), Expect(3) = 3e-034
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = +1 / -1
Query: 271 TIQATDLQNRSIKLGGEGAHPDPQKREYGCQ*H*QHNDNGRHPALPADHALEERVEVEDD 450
T Q T+L N +IKLGGE + DPQKR+YGC *H*Q+N+NGRHPAL A+HALEERVE+ED+
Sbjct: 429 TFQTTNL*NWAIKLGGERTYTDPQKRQYGC**H*QNNNNGRHPALLANHALEERVEMEDN 250
Query: 451 PEGEEQLAEQRAPGXXPAR 507
PEGEEQLA Q PG R
Sbjct: 249 PEGEEQLANQWPPGFVSIR 193
Score = 78.5 bits (165), Expect(5) = 1e-021
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = -1 / +3
Query: 415 DRQAGQGADRCRCAVNATGIHTLSFVGPGEPLRHQV*WTCSGGLWLGL*VR 263
D QA QGAD C C V+AT IH +SFVGP + +RHQV*W S GLW G+*+R
Sbjct: 285 DWQAEQGADHCCCFVSATSIHIVSFVGPCKSVRHQV*WPSSRGLWFGM*MR 437
Score = 46.4 bits (95), Expect(5) = 1e-056
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / -3
Query: 96 INIKHRFTKTYANQRSPKNIENV 164
I + H FTKTYANQRSPKNIEN+
Sbjct: 598 IFLNHYFTKTYANQRSPKNIENL 530
Score = 32.7 bits (65), Expect(5) = 1e-056
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2 / -1
Query: 32 LYCACLNIYNSHFSILYF 85
+YCACLNIYN++ +I F
Sbjct: 681 VYCACLNIYNNNNTIFSF 628
Score = 31.8 bits (63), Expect(3) = 3e-034
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / -1
Query: 50 NIYNSHFSILYFPPAHKH 103
N N+ FS YFPP HKH
Sbjct: 654 NNNNTIFSFFYFPPVHKH 601
Score = 31.3 bits (62), Expect(6) = 7e-047
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / +3
Query: 160 FSMFFGDR*LA*VLVK 113
FS+FFGDR LA*VLVK
Sbjct: 534 FSIFFGDRWLA*VLVK 581
Score = 30.9 bits (61), Expect(6) = 7e-047
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +3
Query: 62 CCRY*DRHNR 33
CCRY*DRHNR
Sbjct: 651 CCRY*DRHNR 680
Score = 27.2 bits (53), Expect(5) = 1e-021
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 79 ENGEVTVVDIETGTIE 32
E+ V VVDIETGTI+
Sbjct: 634 EDSVVVVVDIETGTID 681
Score = 26.7 bits (52), Expect(6) = 7e-047
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 193 RGFYSFVSYSTF 158
RG YSF+SYS F
Sbjct: 502 RGLYSFISYSNF 537
Score = 26.3 bits (51), Expect(6) = 7e-047
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 101 VYEQEGNREWRSDCC 57
VYEQE NR+ R CC
Sbjct: 603 VYEQEENRKRRR*CC 647
Score = 25.8 bits (50), Expect(5) = 1e-056
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -3
Query: 191 SHYSSTGETQNLFP 232
SHYSST + NLFP
Sbjct: 502 SHYSSTTKMINLFP 461
Score = 24.9 bits (48), Expect(3) = 3e-034
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / -1
Query: 115 SLKPTLISGHQRT*K 159
SLKP L S HQR *K
Sbjct: 579 SLKPMLTSDHQRI*K 535
Score = 24.4 bits (47), Expect(5) = 1e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 146 W*PLISVGFSEAV 108
W* L+S+GFSE +
Sbjct: 548 W*SLVSIGFSEVM 586
Score = 23.1 bits (44), Expect(6) = 7e-047
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +2
Query: 241 SLLRE*VLSFPSARVVR 191
SL R+*+ F SARVVR
Sbjct: 452 SLYRK*IYHFCSARVVR 502
Score = 22.6 bits (43), Expect(5) = 1e-021
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 192 EGSILSLAIQRF 157
EGSILSL IQ F
Sbjct: 503 EGSILSLVIQIF 538
Score = 22.6 bits (43), Expect(5) = 1e-056
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / -1
Query: 158 KR*IANERIEPS 193
K *I NERIEPS
Sbjct: 537 KI*ITNERIEPS 502
Score = 21.7 bits (41), Expect(5) = 1e-021
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2 / +3
Query: 234 LGNRF*VSPVLE**EGSI 181
+GNRF + VLE**E ++
Sbjct: 459 IGNRFIIFVVLE**ERAL 512
>gb|CL157591.1|CL157591 104_345_10783695_114_31477_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783695, DNA
sequence
Length = 773
Score = 156 bits (336), Expect(5) = 2e-053
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = +2 / +3
Query: 260 LPHSQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWR 439
LPHS SKPQTSRTGPSNLVA GLTRTHKR++MDASS D TTT VGTL CLPITPLRNGWR
Sbjct: 555 LPHSHSKPQTSRTGPSNLVANGLTRTHKRDNMDASSTDKTTTMVGTLLCLPITPLRNGWR 734
Query: 440 WRTTQKEKNSLP 475
WR TQKEKNSLP
Sbjct: 735 WRITQKEKNSLP 770
Score = 124 bits (265), Expect(6) = 2e-042
Identities = 51/73 (69%), Positives = 55/73 (75%)
Frame = -2 / -2
Query: 477 LGKLFFSFWVVLHLHPFLKGVIGRQGRVPTXXXXXXXXXXXXXXXXXVRVSPFATKFDGP 298
+GKLFFSFWV+LHLHPFLKGVIG+Q RVPT VRVSPFATKFDGP
Sbjct: 772 IGKLFFSFWVILHLHPFLKGVIGKQSRVPTIVVVLSVLLASILSLLWVRVSPFATKFDGP 593
Query: 297 VLEVCGLDCE*GR 259
VLEVCGL+CE*GR
Sbjct: 592 VLEVCGLECE*GR 554
Score = 120 bits (256), Expect(3) = 4e-032
Identities = 50/68 (73%), Positives = 59/68 (86%)
Frame = +1 / +2
Query: 271 TIQATDLQNRSIKLGGEGAHPDPQKREYGCQ*H*QHNDNGRHPALPADHALEERVEVEDD 450
T Q T+L N +IKLGGE + DPQKR+YGC *H*Q+N+NGRHPAL A+HALEERVE+ED+
Sbjct: 566 TFQTTNL*NWAIKLGGERTYTDPQKRQYGC**H*QNNNNGRHPALLANHALEERVEMEDN 745
Query: 451 PEGEEQLA 474
PEGEEQLA
Sbjct: 746 PEGEEQLA 769
Score = 78.5 bits (165), Expect(5) = 2e-021
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = -1 / -1
Query: 415 DRQAGQGADRCRCAVNATGIHTLSFVGPGEPLRHQV*WTCSGGLWLGL*VR 263
D QA QGAD C C V+AT IH +SFVGP + +RHQV*W S GLW G+*+R
Sbjct: 710 DWQAEQGADHCCCFVSATSIHIVSFVGPCKSVRHQV*WPSSRGLWFGM*MR 558
Score = 46.4 bits (95), Expect(5) = 2e-053
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / +1
Query: 96 INIKHRFTKTYANQRSPKNIENV 164
I + H FTKTYANQRSPKNIEN+
Sbjct: 397 IFLNHYFTKTYANQRSPKNIENL 465
Score = 32.7 bits (65), Expect(5) = 2e-053
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2 / +2
Query: 32 LYCACLNIYNSHFSILYF 85
+YCACLNIYN++ +I F
Sbjct: 314 VYCACLNIYNNNNTIFSF 367
Score = 31.8 bits (63), Expect(3) = 4e-032
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / +2
Query: 50 NIYNSHFSILYFPPAHKH 103
N N+ FS YFPP HKH
Sbjct: 341 NNNNTIFSFFYFPPVHKH 394
Score = 31.3 bits (62), Expect(6) = 2e-042
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / -1
Query: 160 FSMFFGDR*LA*VLVK 113
FS+FFGDR LA*VLVK
Sbjct: 461 FSIFFGDRWLA*VLVK 414
Score = 30.9 bits (61), Expect(6) = 2e-042
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / -1
Query: 62 CCRY*DRHNR 33
CCRY*DRHNR
Sbjct: 344 CCRY*DRHNR 315
Score = 27.2 bits (53), Expect(5) = 2e-021
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 79 ENGEVTVVDIETGTIE 32
E+ V VVDIETGTI+
Sbjct: 361 EDSVVVVVDIETGTID 314
Score = 26.7 bits (52), Expect(6) = 2e-042
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / -2
Query: 193 RGFYSFVSYSTF 158
RG YSF+SYS F
Sbjct: 493 RGLYSFISYSNF 458
Score = 26.3 bits (51), Expect(6) = 2e-042
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / -1
Query: 101 VYEQEGNREWRSDCC 57
VYEQE NR+ R CC
Sbjct: 392 VYEQEENRKRRR*CC 348
Score = 25.8 bits (50), Expect(5) = 2e-053
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 191 SHYSSTGETQNLFP 232
SHYSST + NLFP
Sbjct: 493 SHYSSTTKMINLFP 534
Score = 24.9 bits (48), Expect(3) = 4e-032
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 115 SLKPTLISGHQRT*K 159
SLKP L S HQR *K
Sbjct: 416 SLKPMLTSDHQRI*K 460
Score = 24.4 bits (47), Expect(5) = 2e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / -3
Query: 146 W*PLISVGFSEAV 108
W* L+S+GFSE +
Sbjct: 447 W*SLVSIGFSEVM 409
Score = 23.1 bits (44), Expect(6) = 2e-042
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 241 SLLRE*VLSFPSARVVR 191
SL R+*+ F SARVVR
Sbjct: 543 SLYRK*IYHFCSARVVR 493
Score = 22.6 bits (43), Expect(5) = 2e-053
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 158 KR*IANERIEPS 193
K *I NERIEPS
Sbjct: 458 KI*ITNERIEPS 493
Score = 22.6 bits (43), Expect(5) = 2e-021
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 192 EGSILSLAIQRF 157
EGSILSL IQ F
Sbjct: 492 EGSILSLVIQIF 457
Score = 21.7 bits (41), Expect(5) = 2e-021
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2 / -1
Query: 234 LGNRF*VSPVLE**EGSI 181
+GNRF + VLE**E ++
Sbjct: 536 IGNRFIIFVVLE**ERAL 483
>gb|BF586839.1|BF586839 FM1_30_H12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 289
Score = 125 bits (267), Expect(3) = 8e-031
Identities = 51/64 (79%), Positives = 53/64 (82%)
Frame = +2 / -3
Query: 260 LPHSQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWR 439
LPHS SKPQTSRTGPSNLVA GLTRTHKR +MDAS D TTT V TL C+PITPLRNGW
Sbjct: 194 LPHSHSKPQTSRTGPSNLVANGLTRTHKRYNMDASITDKTTTMVRTLLCMPITPLRNGWI 15
Query: 440 WRTT 451
WR T
Sbjct: 14 WRIT 3
Score = 62.0 bits (129), Expect(4) = 1e-022
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -2 / +1
Query: 333 RVSPFATKFDGPVLEVCGLDCE*GR 259
RVSPFATKFDGPVLEVCGL+CE*GR
Sbjct: 121 RVSPFATKFDGPVLEVCGLECE*GR 195
Score = 47.8 bits (98), Expect(4) = 1e-022
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2 / +1
Query: 453 WVVLHLHPFLKGVIGRQGRVPT 388
WV+LH+HPFLKGVIG Q RV T
Sbjct: 1 WVILHIHPFLKGVIGMQSRVRT 66
Score = 26.3 bits (51), Expect(4) = 1e-022
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +3
Query: 193 RGFYSFVSYST 161
RG YSF+SYST
Sbjct: 255 RGLYSFISYST 287
Score = 23.1 bits (44), Expect(3) = 8e-031
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 191 SHYSSTGETQNLFP 232
SHYS T + NLFP
Sbjct: 255 SHYSITTKMINLFP 214
Score = 21.7 bits (41), Expect(3) = 8e-031
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / -3
Query: 164 *IANERIEPS 193
*I NERIEPS
Sbjct: 284 *ITNERIEPS 255
Score = 20.8 bits (39), Expect(4) = 1e-022
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2 / +2
Query: 234 LGNRF*VSPVLE**EGSI 181
+GNRF + V+E**E ++
Sbjct: 212 IGNRFIILVVIE**ERAL 265
>gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C06_A002 3', mRNA sequence
Length = 677
Score = 77.1 bits (162), Expect(2) = 6e-021
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -2 / +3
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPT 388
+WGPL GKLFF+FWV++HL+PFLKG++GRQ R PT
Sbjct: 39 SWGPLFGKLFFAFWVIIHLYPFLKGLVGRQNRTPT 143
Score = 44.1 bits (90), Expect(2) = 6e-021
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3 / +1
Query: 362 WHPYSLFCGSG*APSPPSLMDLFWRSVAWIVSE 264
W P S CGS S P MDLFWRSV W ++
Sbjct: 169 WPPSSRSCGSASTRSLPRAMDLFWRSVVWTATK 267
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 77.1 bits (162), Expect(2) = 6e-021
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -2 / +1
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPT 388
+WGPL GKLFF+FWV++HL+PFLKG++GRQ R PT
Sbjct: 325 SWGPLFGKLFFAFWVIIHLYPFLKGLVGRQNRTPT 429
Score = 44.1 bits (90), Expect(2) = 6e-021
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3 / +2
Query: 362 WHPYSLFCGSG*APSPPSLMDLFWRSVAWIVSE 264
W P S CGS S P MDLFWRSV W ++
Sbjct: 455 WPPSSRSCGSASTHSLPRAMDLFWRSVVWTATK 553
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 575,542,544
Number of Sequences: 832831
Number of extensions: 7976036
Number of successful extensions: 135769
Number of sequences better than 1.0e-020: 7
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 14237935047
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)