TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed... 386 e-106
gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed... 300 2e-080
gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorgh... 130 1e-034
gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorgh... 134 1e-030
>gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 3', mRNA sequence
Length = 729
Score = 386 bits (837), Expect = e-106
Identities = 159/168 (94%), Positives = 163/168 (97%)
Frame = -1 / +1
Query: 505 GEGAILHIXXLDDVASVAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCR 326
GEGAILHI LDDVASVAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCR
Sbjct: 1 GEGAILHIKELDDVASVAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCR 180
Query: 325 LCIHIATKIHLKEERTPKFTNRPCSCSTKKGTIYHLFIRERGRFKSESIYMRSGQLTLGA 146
LCIHIATKI LKEE TPKFTNRPCSCS+KKGT+YHLFIRERGRFKSESIYMRSG+LTLGA
Sbjct: 181 LCIHIATKIQLKEEMTPKFTNRPCSCSSKKGTVYHLFIRERGRFKSESIYMRSGRLTLGA 360
Query: 145 LESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQAL 2
LESAVL KFRSLNHVPVWKDERPPSIRGGDDLK+YRIYPVGLTQRQAL
Sbjct: 361 LESAVLSKFRSLNHVPVWKDERPPSIRGGDDLKVYRIYPVGLTQRQAL 504
Score = 335 bits (725), Expect = 5e-091
Identities = 146/168 (86%), Positives = 150/168 (89%)
Frame = +2 / -1
Query: 2 QSLTLR*TDWVNSV*FQVIPTSNARWPFILPYRNVVEGPKFTEHCGFQGSQS*LA*SHVN 181
QSLTL *TD VNSV FQVIPTSN RW FILPYRNV+EGPKFTEHC FQGSQS* A SH+N
Sbjct: 504 QSLTLC*TDRVNSVYFQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PARSHIN 325
Query: 182 AL*LKPPSLSDK*VVNCSLFGGTATRTICKFWSPFLL*MDLGSNMYTKTTR*MNRCHVNK 361
AL*LKPPS SDK*VVNCSLF GTATRTICKFWS FLL*+DLGSNMYTKTTR*MN CHVNK
Sbjct: 324 AL*LKPPSFSDK*VVNCSLFAGTATRTICKFWSHFLL*LDLGSNMYTKTTR*MNCCHVNK 145
Query: 362 SFERIGWTIILPPQRLIEGIRV*SNIFHCLSN*SNIIKLXNM*YCAFS 505
FERI TIILPPQRLIEGIR+*SNIFHCLSN*SNIIK NM*YC FS
Sbjct: 144 GFERIRGTIILPPQRLIEGIRI*SNIFHCLSN*SNIIKFLNM*YCTFS 1
Score = 331 bits (717), Expect = 6e-090
Identities = 147/168 (87%), Positives = 150/168 (89%)
Frame = +1 / -3
Query: 1 TKPDVALDRLGKFCIISGHPHL*CSVAFHPSIQERG*GT*IYRALRIPRLPELTGLISCK 180
TKPDV LDR GKFCI+SGHPHL* SV FHPSIQER *GT*IY AL+IPRLPELTG IS K
Sbjct: 505 TKPDVVLDRPGKFCILSGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPISYK 326
Query: 181 CSLT*TALSLG*ISGKLFPFWWNSYKDDL*ILESFPPLNGSW*QYVYKDDKMNEPLPCQ* 360
CSLT*TAL LG*ISGKLFPF WNSYKDDL*ILESFPPL GSW*QYVYKDDKMNE LPCQ*
Sbjct: 325 CSLT*TALFLG*ISGKLFPFCWNSYKDDL*ILESFPPLTGSW*QYVYKDDKMNELLPCQ* 146
Query: 361 EL*KNRMDHHTSTSKID*RHQGLKQYFSLS*QLKQHHQAX*YVILRLL 504
L*KN+ DHHTSTSKID*RHQ LKQYFSLS*QLKQHHQ *YVIL LL
Sbjct: 145 GL*KNQRDHHTSTSKID*RHQDLKQYFSLS*QLKQHHQVP*YVILHLL 2
Score = 329 bits (712), Expect = 3e-089
Identities = 144/167 (86%), Positives = 150/167 (89%)
Frame = -3 / +3
Query: 503 RRRNITY*XA**CCFSC*DNEKYCFKP*CLQSIFEVEV*WSIRFFQSSY*HGSGSFILSS 324
RR NITY* **CCFSC*DNEKYCFK *CLQSIFEVEV*WS+ FFQS Y*HGS SFILSS
Sbjct: 3 RRCNITY*GT**CCFSC*DNEKYCFKS*CLQSIFEVEV*WSL*FFQSPY*HGSSSFILSS 182
Query: 323 LYTYCYQDPFKGGKDSKIYKSSL*LFHQKGNNLPLIYPRERAV*VREHLHEIRPVNSGSL 144
LYTYCYQDP KGG DSKIYKSSL*LF QKGN+LPLIYPR+RAV*VREHL+EI PVNSGSL
Sbjct: 183 LYTYCYQDPVKGGNDSKIYKSSL*LFQQKGNSLPLIYPRKRAV*VREHLYEIGPVNSGSL 362
Query: 143 GIRSAR*I*VPQPRSCMEG*KATEH*RWG*PEIIQNLPSRSNATSGF 3
GI SA+*I*VPQ RSCMEG*K TE+*RWG*PE IQNLP RSN TSGF
Sbjct: 363 GICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PESIQNLPGRSNTTSGF 503
Score = 322 bits (698), Expect = 3e-087
Identities = 144/167 (86%), Positives = 148/167 (88%)
Frame = +3 / -2
Query: 3 KA*RCVRPTG*ILYNFRXXXXXXXXXXXXFHTGTWLRDLNLPSTADSKAPRVNWPDLM*M 182
KA*RCVRPTG*ILY FR FHTGT LRDLNL STADSKAPRVN PDL+*M
Sbjct: 503 KA*RCVRPTG*ILYTFRSSPPLILGGLSSFHTGT*LRDLNLLSTADSKAPRVNRPDLI*M 324
Query: 183 LSDLNRPLSRINKW*IVPFLVEQLQGRFVNFGVLSSFKWILVAICIQRRQDE*TAAMSIR 362
LSDLNRPLSRINKW* VPFL+EQLQGRFVNFGV+SSF WILVAICIQRRQDE*TAAMSIR
Sbjct: 323 LSDLNRPLSRINKW*TVPFLLEQLQGRFVNFGVISSFNWILVAICIQRRQDE*TAAMSIR 144
Query: 363 ALKESDGPSYFHLKD*LKASGFEAIFFIVLATEATSSSXLICNIAPS 503
ALKES+GPSYFHLKD*LKASGFEAIFFIVLATEATSSS LICNIAPS
Sbjct: 143 ALKESEGPSYFHLKD*LKASGFEAIFFIVLATEATSSSSLICNIAPS 3
Score = 275 bits (594), Expect = 6e-073
Identities = 122/140 (87%), Positives = 126/140 (90%)
Frame = -2 / +2
Query: 420 MPSINL*GGSMMVHPILSKLLLTWQRFIHLVVFVYILLPRSI*RRKGLQNLQIVLVAVPP 241
MPSINL*GGSMMV ILSK LLTWQ+FIHLVVFVYILLPRS *RRK LQNLQIVLVAVP
Sbjct: 86 MPSINL*GGSMMVPLILSKPLLTWQQFIHLVVFVYILLPRSS*RRK*LQNLQIVLVAVPA 265
Query: 240 KREQFTTYLSEREGGLSQRAFT*DQAS*LWEPWNPQCSVNLGPSTTFLYGRMKGHRALEV 61
KREQFTTYLSE+EGGLSQRAF *D+A *LWEPWN QCSVNLGPS TFLYGRMK HR LEV
Sbjct: 266 KREQFTTYLSEKEGGLSQRAFI*DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEV 445
Query: 60 GMT*NYTEFTQSV*RNVRLC 1
GMT* YTEFT+SV* NVRLC
Sbjct: 446 GMT*KYTEFTRSV*HNVRLC 505
>gb|CF770670.1|CF770670 DSBF1_9_C11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 5', mRNA sequence
Length = 641
Score = 300 bits (649), Expect = 2e-080
Identities = 123/141 (87%), Positives = 125/141 (88%)
Frame = -1 / +3
Query: 637 RYRFSXXFEXXXEXDYXXEKFFQXXVXGSIPVVVGAPNIQEFXPGEGAILHIXXLDDVAS 458
RYRFS FE E DY EKFFQ V GSIPVVVGAPNIQEF PGEGAILHI LDDVAS
Sbjct: 219 RYRFSLAFENSNEEDYVTEKFFQSLVAGSIPVVVGAPNIQEFSPGEGAILHIKELDDVAS 398
Query: 457 VAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCRLCIHIATKIHLKEERT 278
VAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCRLCIHIATKI LKEE T
Sbjct: 399 VAKTMKNIASNPDAFNQSLRWKYDGPSDSFKALIDMAAVHSSCRLCIHIATKIQLKEEMT 578
Query: 277 PKFTNRPCSCSTKKGTIYHLF 215
PKFTNRPCSCS+KKGT+YHLF
Sbjct: 579 PKFTNRPCSCSSKKGTVYHLF 641
Score = 274 bits (592), Expect = 1e-072
Identities = 122/140 (87%), Positives = 125/140 (89%)
Frame = +3 / -2
Query: 216 NKW*IVPFLVEQLQGRFVNFGVLSSFKWILVAICIQRRQDE*TAAMSIRALKESDGPSYF 395
NKW* VPFL+EQLQGRFVNFGV+SSF WILVAICIQRRQDE*TAAMSIRALKES+GPSYF
Sbjct: 640 NKW*TVPFLLEQLQGRFVNFGVISSFNWILVAICIQRRQDE*TAAMSIRALKESEGPSYF 461
Query: 396 HLKD*LKASGFEAIFFIVLATEATSSSXLICNIAPSPGXNS*IFGAPTTTGIEPXTXX*K 575
HLKD*LKASGFEAIFFIVLATEATSSS LICNIAPSPG NS*IFGAPTTTGIEP T *K
Sbjct: 460 HLKD*LKASGFEAIFFIVLATEATSSSSLICNIAPSPGENS*IFGAPTTTGIEPATSD*K 281
Query: 576 NFSXX*SXSXXXSNXXLNL* 635
NFS *S S SN LNL*
Sbjct: 280 NFSVT*SSSLEFSNAKLNL* 221
Score = 260 bits (563), Expect = 1e-068
Identities = 114/140 (81%), Positives = 116/140 (82%)
Frame = -3 / +2
Query: 635 LQIQXXI*XXX*XGLXX*KVFSVXSXRFYSGCCWCSKYSRVXSGRRRNITY*XA**CCFS 456
LQIQ I* * GL KVFSV RFYS CCWCSKYSRV SGRR NITY* **CCFS
Sbjct: 221 LQIQLGI*EF**GGLRNRKVFSVTGSRFYSSCCWCSKYSRVFSGRRCNITY*GT**CCFS 400
Query: 455 C*DNEKYCFKP*CLQSIFEVEV*WSIRFFQSSY*HGSGSFILSSLYTYCYQDPFKGGKDS 276
C*DNEKYCFK *CLQSIFEVEV*WS+ FFQS Y*HGS SFILSSLYTYCYQDP KGG DS
Sbjct: 401 C*DNEKYCFKS*CLQSIFEVEV*WSL*FFQSPY*HGSSSFILSSLYTYCYQDPVKGGNDS 580
Query: 275 KIYKSSL*LFHQKGNNLPLI 216
KIYKSSL*LF QKGN+LPLI
Sbjct: 581 KIYKSSL*LFQQKGNSLPLI 640
Score = 257 bits (555), Expect = 1e-067
Identities = 115/140 (82%), Positives = 116/140 (82%)
Frame = +1 / -3
Query: 217 ISGKLFPFWWNSYKDDL*ILESFPPLNGSW*QYVYKDDKMNEPLPCQ*EL*KNRMDHHTS 396
ISGKLFPF WNSYKDDL*ILESFPPL GSW*QYVYKDDKMNE LPCQ* L*KN+ DHHTS
Sbjct: 639 ISGKLFPFCWNSYKDDL*ILESFPPLTGSW*QYVYKDDKMNELLPCQ*GL*KNQRDHHTS 460
Query: 397 TSKID*RHQGLKQYFSLS*QLKQHHQAX*YVILRLLPEXTLEYLEHQQQPE*NLXLXTEK 576
TSKID*RHQ LKQYFSLS*QLKQHHQ *YVIL LLPE TLEYLEHQQQ E*NL TEK
Sbjct: 459 TSKID*RHQDLKQYFSLS*QLKQHHQVP*YVILHLLPEKTLEYLEHQQQLE*NLLPVTEK 280
Query: 577 TFXXHNPXXXXSQXXX*ICS 636
TF NP SQ *ICS
Sbjct: 279 TFLLRNPPH*NSQMPS*ICS 220
Score = 240 bits (519), Expect = 1e-062
Identities = 109/141 (77%), Positives = 112/141 (79%)
Frame = +2 / -1
Query: 215 K*VVNCSLFGGTATRTICKFWSPFLL*MDLGSNMYTKTTR*MNRCHVNKSFERIGWTIIL 394
K*VVNCSLF GTATRTICKFWS FLL*+DLGSNMYTKTTR*MN CHVNK FERI TIIL
Sbjct: 641 K*VVNCSLFAGTATRTICKFWSHFLL*LDLGSNMYTKTTR*MNCCHVNKGFERIRGTIIL 462
Query: 395 PPQRLIEGIRV*SNIFHCLSN*SNIIKLXNM*YCAFSRXKLLNIWSXXXXXXXXXXXXLK 574
PPQRLIEGIR+*SNIFHCLSN*SNIIK NM*YC FSR KLLNIWS LK
Sbjct: 461 PPQRLIEGIRI*SNIFHCLSN*SNIIKFLNM*YCTFSRRKLLNIWSTNNNWNRTCYQ*LK 282
Query: 575 KLFXXIILLXXXLKXXAESVA 637
KLF +ILL LK AESVA
Sbjct: 281 KLFCYVILLIRILKCQAESVA 219
Score = 132 bits (282), Expect(3) = 2e-036
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = -2 / +1
Query: 420 MPSINL*GGSMMVHPILSKLLLTWQRFIHLVVFVYILLPRSI*RRKGLQNLQIVLVAVPP 241
MPSINL*GGSMMV ILSK LLTWQ+FIHLVVFVYILLPRS *RRK LQNLQIVLVAVP
Sbjct: 436 MPSINL*GGSMMVPLILSKPLLTWQQFIHLVVFVYILLPRSS*RRK*LQNLQIVLVAVPA 615
Query: 240 KREQFTTY 217
KREQFTTY
Sbjct: 616 KREQFTTY 639
Score = 32.7 bits (65), Expect(3) = 2e-036
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / +1
Query: 528 QIFKSXLREKAQYYI 484
QIFKS LREK QYYI
Sbjct: 328 QIFKSFLREKVQYYI 372
Score = 27.2 bits (53), Expect(3) = 2e-036
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 636 ATDSAXXLRXXXXRIMXXKSFFS 568
ATDSA LR RI KSFFS
Sbjct: 220 ATDSAWHLRILMRRIT*QKSFFS 288
>gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948100, DNA
sequence
Length = 599
Score = 130 bits (278), Expect(2) = 1e-034
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = -1 / +1
Query: 187 ESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQ 8
+S+ RSG+LTLGALESAVL KFRSLNHVPVWKDERPPSIRGGDDL +YRIYPVGLTQRQ
Sbjct: 382 QSMLCRSGRLTLGALESAVLSKFRSLNHVPVWKDERPPSIRGGDDL*VYRIYPVGLTQRQ 561
Query: 7 AL 2
AL
Sbjct: 562 AL 567
Score = 116 bits (247), Expect(2) = 2e-032
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = -2 / +2
Query: 171 DQAS*LWEPWNPQCSVNLGPSTTFLYGRMKGHRALEVGMT*NYTEFTQSV*RNVRLC 1
D+A *LWEPWN QCSVNLGPS TFLYGRMK HR LEVGMT YTEFT+SV* NVRLC
Sbjct: 398 DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEVGMTCKYTEFTRSV*HNVRLC 568
Score = 109 bits (232), Expect(2) = 1e-028
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = +1 / -2
Query: 1 TKPDVALDRLGKFCIISGHPHL*CSVAFHPSIQERG*GT*IYRALRIPRLPELTGLI 171
TKPDV LDR GKFCI++GHPHL* SV FHPSIQER *GT*IY AL+IPRLPELTG I
Sbjct: 568 TKPDVVLDRPGKFCILTGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPI 398
Score = 105 bits (224), Expect(2) = 6e-026
Identities = 46/55 (83%), Positives = 47/55 (85%)
Frame = +2 / -3
Query: 2 QSLTLR*TDWVNSV*FQVIPTSNARWPFILPYRNVVEGPKFTEHCGFQGSQS*LA 166
QSLTL *TD VNSV QVIPTSN RW FILPYRNV+EGPKFTEHC FQGSQS* A
Sbjct: 567 QSLTLC*TDRVNSVYLQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PA 403
Score = 102 bits (217), Expect(2) = 2e-025
Identities = 46/57 (80%), Positives = 49/57 (85%)
Frame = -3 / +3
Query: 173 EIRPVNSGSLGIRSAR*I*VPQPRSCMEG*KATEH*RWG*PEIIQNLPSRSNATSGF 3
+I PVNSGSLGI SA+*I*VPQ RSCMEG*K TE+*RWG*P IQNLP RSN TSGF
Sbjct: 396 QIGPVNSGSLGICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PVSIQNLPGRSNTTSGF 566
Score = 46.0 bits (94), Expect(2) = 2e-032
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 220 LFIRERGRFKSESIYMRSGQLTL 152
LFIRERGRFKSESIYMR G T+
Sbjct: 3 LFIRERGRFKSESIYMRYGSSTI 71
Score = 40.0 bits (81), Expect(2) = 1e-028
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 156 VNWPDLM*MLSDLNRPLSRINK 221
V P L+*MLSDLNRPLSRINK
Sbjct: 67 VELPYLI*MLSDLNRPLSRINK 2
Score = 38.6 bits (78), Expect(2) = 1e-034
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -3 / +2
Query: 221 LIYPRERAV*VREHLHEI 168
LIYPR+RAV*VREHL+E+
Sbjct: 2 LIYPRKRAV*VREHLYEV 55
Score = 35.9 bits (72), Expect(2) = 2e-025
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -2 / +1
Query: 222 TYLSEREGGLSQRAF 178
TYLSE+EGGLSQRAF
Sbjct: 1 TYLSEKEGGLSQRAF 45
Score = 34.5 bits (69), Expect(2) = 6e-026
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2 / -1
Query: 173 HVNAL*LKPPSLSDK* 220
H+NAL*LKPPS SDK*
Sbjct: 50 HINAL*LKPPSFSDK* 3
>gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222816, DNA
sequence
Length = 668
Score = 134 bits (287), Expect = 1e-030
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -1 / +3
Query: 187 ESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQ 8
+S+ RSG+LTLGALESAVL KFRSLNHVPVWKDERPPSIRGGDDLK+YRIYPVGLTQRQ
Sbjct: 120 QSMLCRSGRLTLGALESAVLSKFRSLNHVPVWKDERPPSIRGGDDLKVYRIYPVGLTQRQ 299
Query: 7 AL 2
AL
Sbjct: 300 AL 305
Score = 118 bits (252), Expect = 9e-026
Identities = 48/57 (84%), Positives = 50/57 (87%)
Frame = -2 / +1
Query: 171 DQAS*LWEPWNPQCSVNLGPSTTFLYGRMKGHRALEVGMT*NYTEFTQSV*RNVRLC 1
D+A *LWEPWN QCSVNLGPS TFLYGRMK HR LEVGMT* YTEFT+SV* NVRLC
Sbjct: 136 DRAG*LWEPWNLQCSVNLGPSITFLYGRMKDHRVLEVGMT*KYTEFTRSV*HNVRLC 306
Score = 110 bits (235), Expect = 2e-023
Identities = 48/57 (84%), Positives = 50/57 (87%)
Frame = +1 / -3
Query: 1 TKPDVALDRLGKFCIISGHPHL*CSVAFHPSIQERG*GT*IYRALRIPRLPELTGLI 171
TKPDV LDR GKFCI+SGHPHL* SV FHPSIQER *GT*IY AL+IPRLPELTG I
Sbjct: 306 TKPDVVLDRPGKFCILSGHPHL*YSVVFHPSIQERD*GT*IY*ALQIPRLPELTGPI 136
Score = 108 bits (230), Expect = 1e-022
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = +2 / -1
Query: 2 QSLTLR*TDWVNSV*FQVIPTSNARWPFILPYRNVVEGPKFTEHCGFQGSQS*LA 166
QSLTL *TD VNSV FQVIPTSN RW FILPYRNV+EGPKFTEHC FQGSQS* A
Sbjct: 305 QSLTLC*TDRVNSVYFQVIPTSNTRWSFILPYRNVIEGPKFTEHCRFQGSQS*PA 141
Score = 105 bits (224), Expect = 6e-022
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +2
Query: 173 EIRPVNSGSLGIRSAR*I*VPQPRSCMEG*KATEH*RWG*PEIIQNLPSRSNATSGF 3
+I PVNSGSLGI SA+*I*VPQ RSCMEG*K TE+*RWG*PE IQNLP RSN TSGF
Sbjct: 134 QIGPVNSGSLGICSAQ*I*VPQSRSCMEG*KTTEY*RWG*PESIQNLPGRSNTTSGF 304
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 693,331,824
Number of Sequences: 832831
Number of extensions: 9303805
Number of successful extensions: 59319
Number of sequences better than 1.0e-020: 4
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)