TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA10g02.yg.2.1
(277 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorgh... 138 9e-053
gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum m... 138 1e-052
gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propi... 131 6e-051
gb|BG488317.1|BG488317 RHIZ2_62_B04.b1_A003 Rhizome2 (RHIZ2... 117 6e-038
gb|CW057648.1|CW057648 104_299_10518335_115_30171 Sorghum m... 145 3e-034
gb|CW434864.1|CW434864 fsbb001f150m06f0 Sorghum methylation... 145 3e-034
gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propi... 84 4e-033
gb|BF655583.1|BF655583 FM1_45_G09.b1_A003 Floral-Induced Me... 90 8e-031
gb|BG462954.1|BG462954 EM1_46_F12.b1_A002 Embryo 1 (EM1) So... 108 2e-028
gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorg... 115 2e-025
>gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185318, DNA
sequence
Length = 635
Score = 138 bits (296), Expect(2) = 9e-053
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = -3 / -2
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNG+P
Sbjct: 295 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGKP 128
Score = 134 bits (287), Expect(2) = 6e-052
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = -2 / -1
Query: 171 G*ECRSLHCAHTVWTTG*IPQEGSTVALPPRVCRWSSCAYP*HVQGSGRTGWKWEAS 1
G ECRSLHCAHTVW T *IPQEGS VALPPR+CRWSSCAYP HVQGSGR GWKWEAS
Sbjct: 296 GRECRSLHCAHTVWATR*IPQEGSAVALPPRICRWSSCAYPEHVQGSGRAGWKWEAS 126
Score = 127 bits (273), Expect(2) = 2e-046
Identities = 51/61 (83%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 2 LASHFQPVLPEPWTC*GYAQELHRQTLGGKATVLPS*GIYPVVHTVCAQCRLRHSHPSPL 181
LASHFQP LPEPWTC GYAQELHRQ LGGKAT LPS*GIY V HTVCAQCRLRHS P
Sbjct: 127 LASHFQPALPEPWTCSGYAQELHRQILGGKATALPS*GIYRVAHTVCAQCRLRHSRPPLH 306
Query: 182 H 184
H
Sbjct: 307 H 309
Score = 122 bits (262), Expect(2) = 8e-040
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = +1 / +3
Query: 1 TGLPFPTCSPRALDMLRICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM 150
TG PFPTCSPRALDM RICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM
Sbjct: 126 TGFPFPTCSPRALDMFRICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM 275
Score = 118 bits (253), Expect(2) = 7e-044
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = -1 / -3
Query: 166 RVPEPTLCAYRVDHGINTSRRKHCGLTSKSLSMELLRISLTCPRLWENRLEMGGQ 2
RVPEPTLCAYRV H INTSRRK CGLTSK+LSMELLRIS TCPRLWE+RLEMG Q
Sbjct: 291 RVPEPTLCAYRVGHAINTSRRKRCGLTSKNLSMELLRIS*TCPRLWESRLEMGSQ 127
Score = 115 bits (246), Expect(2) = 1e-037
Identities = 48/55 (87%), Positives = 49/55 (89%)
Frame = +3 / +2
Query: 3 WPPISNLFSQSLGHVKDMRKSSIDKLLEVRPQCFLLEVFIPWSTRYAHNVGSGTL 167
W PISNL SQSLGHV+DMRKSSIDK LEVRPQ FLLEVFI W TRYAHNVGSGTL
Sbjct: 128 WLPISNLLSQSLGHVQDMRKSSIDKFLEVRPQRFLLEVFIAWPTRYAHNVGSGTL 292
Score = 88.1 bits (186), Expect(2) = 9e-053
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -3 / -2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG
Sbjct: 397 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 296
Score = 88.1 bits (186), Expect(2) = 6e-052
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1 / -3
Query: 277 TGWTSSLVKCHLLTWTGAMVSRRRCYAPVPTMERG 173
TGWTSSLVKCHLLTWTGAMVS+RRCYAPVP MERG
Sbjct: 399 TGWTSSLVKCHLLTWTGAMVSQRRCYAPVPMMERG 295
Score = 76.7 bits (161), Expect(2) = 7e-044
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2 / -1
Query: 276 QGGPLHSSSVIS*RGLELW*ADGDVMLRFQRWRG 175
QGGPLHSSSVIS*RGLELW*A+GDVMLRFQ WRG
Sbjct: 398 QGGPLHSSSVIS*RGLELW*ANGDVMLRFQ*WRG 297
Score = 75.8 bits (159), Expect(2) = 2e-046
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3 / +2
Query: 174 PLSIVGTGA*HLRRLTIAPVHVRR*HLTSEEVHP 275
PLSI+GTGA*HLR LTIAPVHVRR*HLTSEEVHP
Sbjct: 296 PLSIIGTGA*HLRWLTIAPVHVRR*HLTSEEVHP 397
Score = 58.8 bits (122), Expect(2) = 1e-037
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1 / +3
Query: 199 HNISVGSP*LQSTSGDDT*RVKRSTL 276
HNISVGSP*LQSTSGDDT*RVKRSTL
Sbjct: 321 HNISVGSP*LQSTSGDDT*RVKRSTL 398
Score = 58.8 bits (122), Expect(2) = 8e-040
Identities = 23/34 (67%), Positives = 23/34 (67%)
Frame = +2 / +1
Query: 176 PLHRWNRSITXXXXXXXXXXRQEMTLDE*RGPPC 277
PLH WNRSIT RQEMTLDE*RGPPC
Sbjct: 298 PLHHWNRSITSPLAHHSSSPRQEMTLDE*RGPPC 399
>gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497773, DNA
sequence
Length = 706
Score = 138 bits (296), Expect(2) = 1e-052
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = -3 / -3
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNG+P
Sbjct: 578 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGKP 411
Score = 134 bits (287), Expect(2) = 6e-052
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = -2 / -2
Query: 171 G*ECRSLHCAHTVWTTG*IPQEGSTVALPPRVCRWSSCAYP*HVQGSGRTGWKWEAS 1
G ECRSLHCAHTVW T *IPQEGS VALPPR+CRWSSCAYP HVQGSGR GWKWEAS
Sbjct: 579 GRECRSLHCAHTVWATR*IPQEGSAVALPPRICRWSSCAYPEHVQGSGRAGWKWEAS 409
Score = 127 bits (273), Expect(2) = 3e-046
Identities = 51/61 (83%), Positives = 51/61 (83%)
Frame = +2 / +2
Query: 2 LASHFQPVLPEPWTC*GYAQELHRQTLGGKATVLPS*GIYPVVHTVCAQCRLRHSHPSPL 181
LASHFQP LPEPWTC GYAQELHRQ LGGKAT LPS*GIY V HTVCAQCRLRHS P
Sbjct: 410 LASHFQPALPEPWTCSGYAQELHRQILGGKATALPS*GIYRVAHTVCAQCRLRHSRPPLH 589
Query: 182 H 184
H
Sbjct: 590 H 592
Score = 122 bits (262), Expect(2) = 9e-040
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = +1 / +1
Query: 1 TGLPFPTCSPRALDMLRICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM 150
TG PFPTCSPRALDM RICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM
Sbjct: 409 TGFPFPTCSPRALDMFRICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM 558
Score = 118 bits (253), Expect(2) = 7e-044
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = -1 / -1
Query: 166 RVPEPTLCAYRVDHGINTSRRKHCGLTSKSLSMELLRISLTCPRLWENRLEMGGQ 2
RVPEPTLCAYRV H INTSRRK CGLTSK+LSMELLRIS TCPRLWE+RLEMG Q
Sbjct: 574 RVPEPTLCAYRVGHAINTSRRKRCGLTSKNLSMELLRIS*TCPRLWESRLEMGSQ 410
Score = 115 bits (246), Expect(2) = 1e-037
Identities = 48/55 (87%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 3 WPPISNLFSQSLGHVKDMRKSSIDKLLEVRPQCFLLEVFIPWSTRYAHNVGSGTL 167
W PISNL SQSLGHV+DMRKSSIDK LEVRPQ FLLEVFI W TRYAHNVGSGTL
Sbjct: 411 WLPISNLLSQSLGHVQDMRKSSIDKFLEVRPQRFLLEVFIAWPTRYAHNVGSGTL 575
Score = 88.1 bits (186), Expect(2) = 6e-052
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1 / -1
Query: 277 TGWTSSLVKCHLLTWTGAMVSRRRCYAPVPTMERG 173
TGWTSSLVKCHLLTWTGAMVS+RRCYAPVP MERG
Sbjct: 682 TGWTSSLVKCHLLTWTGAMVSQRRCYAPVPMMERG 578
Score = 88.1 bits (186), Expect(2) = 1e-052
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -3 / -3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG
Sbjct: 680 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 579
Score = 76.7 bits (161), Expect(2) = 7e-044
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2 / -2
Query: 276 QGGPLHSSSVIS*RGLELW*ADGDVMLRFQRWRG 175
QGGPLHSSSVIS*RGLELW*A+GDVMLRFQ WRG
Sbjct: 681 QGGPLHSSSVIS*RGLELW*ANGDVMLRFQ*WRG 580
Score = 75.8 bits (159), Expect(2) = 3e-046
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3 / +3
Query: 174 PLSIVGTGA*HLRRLTIAPVHVRR*HLTSEEVHP 275
PLSI+GTGA*HLR LTIAPVHVRR*HLTSEEVHP
Sbjct: 579 PLSIIGTGA*HLRWLTIAPVHVRR*HLTSEEVHP 680
Score = 58.8 bits (122), Expect(2) = 1e-037
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1 / +1
Query: 199 HNISVGSP*LQSTSGDDT*RVKRSTL 276
HNISVGSP*LQSTSGDDT*RVKRSTL
Sbjct: 604 HNISVGSP*LQSTSGDDT*RVKRSTL 681
Score = 58.8 bits (122), Expect(2) = 9e-040
Identities = 23/34 (67%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 176 PLHRWNRSITXXXXXXXXXXRQEMTLDE*RGPPC 277
PLH WNRSIT RQEMTLDE*RGPPC
Sbjct: 581 PLHHWNRSITSPLAHHSSSPRQEMTLDE*RGPPC 682
>gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0012G11 5', DNA sequence
Length = 734
Score = 131 bits (281), Expect(2) = 1e-050
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = -3 / -1
Query: 170 GESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
GESAGAYIVRIPCGPRD LKKEALWPYLQEFVDGALAHILNMSKALGEQVGNG+P
Sbjct: 458 GESAGAYIVRIPCGPRDNPLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGKP 291
Score = 131 bits (280), Expect(2) = 6e-051
Identities = 49/57 (85%), Positives = 50/57 (87%)
Frame = -2 / -3
Query: 171 G*ECRSLHCAHTVWTTG*IPQEGSTVALPPRVCRWSSCAYP*HVQGSGRTGWKWEAS 1
G ECRSLHCAHTVW T * PQEGS VALPPR+CRWSSCAYP HVQGSGR GWKWEAS
Sbjct: 459 GRECRSLHCAHTVWATR*PPQEGSAVALPPRICRWSSCAYPEHVQGSGRAGWKWEAS 289
Score = 124 bits (265), Expect(2) = 3e-045
Identities = 50/61 (81%), Positives = 50/61 (81%)
Frame = +2 / +2
Query: 2 LASHFQPVLPEPWTC*GYAQELHRQTLGGKATVLPS*GIYPVVHTVCAQCRLRHSHPSPL 181
LASHFQP LPEPWTC GYAQELHRQ LGGKAT LPS*G Y V HTVCAQCRLRHS P
Sbjct: 290 LASHFQPALPEPWTCSGYAQELHRQILGGKATALPS*GGYRVAHTVCAQCRLRHSRPPLH 469
Query: 182 H 184
H
Sbjct: 470 H 472
Score = 118 bits (252), Expect(2) = 2e-038
Identities = 47/50 (94%), Positives = 47/50 (94%)
Frame = +1 / +1
Query: 1 TGLPFPTCSPRALDMLRICARAPSTNSWR*GHSASFLRYLSRGPHGMRTM 150
TG PFPTCSPRALDM RICARAPSTNSWR*GHSASFLR LSRGPHGMRTM
Sbjct: 289 TGFPFPTCSPRALDMFRICARAPSTNSWR*GHSASFLRGLSRGPHGMRTM 438
Score = 113 bits (241), Expect(2) = 3e-042
Identities = 46/55 (83%), Positives = 48/55 (87%)
Frame = -1 / -2
Query: 166 RVPEPTLCAYRVDHGINTSRRKHCGLTSKSLSMELLRISLTCPRLWENRLEMGGQ 2
RVPEPTLCAYRV H I SRRK CGLTSK+LSMELLRIS TCPRLWE+RLEMG Q
Sbjct: 454 RVPEPTLCAYRVGHAITPSRRKRCGLTSKNLSMELLRIS*TCPRLWESRLEMGSQ 290
Score = 109 bits (232), Expect(2) = 1e-035
Identities = 46/55 (83%), Positives = 47/55 (85%)
Frame = +3 / +3
Query: 3 WPPISNLFSQSLGHVKDMRKSSIDKLLEVRPQCFLLEVFIPWSTRYAHNVGSGTL 167
W PISNL SQSLGHV+DMRKSSIDK LEVRPQ FLLE I W TRYAHNVGSGTL
Sbjct: 291 WLPISNLLSQSLGHVQDMRKSSIDKFLEVRPQRFLLEGVIAWPTRYAHNVGSGTL 455
Score = 88.1 bits (186), Expect(2) = 1e-050
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -3 / -1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG
Sbjct: 560 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 459
Score = 88.1 bits (186), Expect(2) = 6e-051
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1 / -2
Query: 277 TGWTSSLVKCHLLTWTGAMVSRRRCYAPVPTMERG 173
TGWTSSLVKCHLLTWTGAMVS+RRCYAPVP MERG
Sbjct: 562 TGWTSSLVKCHLLTWTGAMVSQRRCYAPVPMMERG 458
Score = 76.7 bits (161), Expect(2) = 3e-042
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2 / -3
Query: 276 QGGPLHSSSVIS*RGLELW*ADGDVMLRFQRWRG 175
QGGPLHSSSVIS*RGLELW*A+GDVMLRFQ WRG
Sbjct: 561 QGGPLHSSSVIS*RGLELW*ANGDVMLRFQ*WRG 460
Score = 75.8 bits (159), Expect(2) = 3e-045
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3 / +3
Query: 174 PLSIVGTGA*HLRRLTIAPVHVRR*HLTSEEVHP 275
PLSI+GTGA*HLR LTIAPVHVRR*HLTSEEVHP
Sbjct: 459 PLSIIGTGA*HLRWLTIAPVHVRR*HLTSEEVHP 560
Score = 58.8 bits (122), Expect(2) = 1e-035
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1 / +1
Query: 199 HNISVGSP*LQSTSGDDT*RVKRSTL 276
HNISVGSP*LQSTSGDDT*RVKRSTL
Sbjct: 484 HNISVGSP*LQSTSGDDT*RVKRSTL 561
Score = 58.8 bits (122), Expect(2) = 2e-038
Identities = 23/34 (67%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 176 PLHRWNRSITXXXXXXXXXXRQEMTLDE*RGPPC 277
PLH WNRSIT RQEMTLDE*RGPPC
Sbjct: 461 PLHHWNRSITSPLAHHSSSPRQEMTLDE*RGPPC 562
>gb|BG488317.1|BG488317 RHIZ2_62_B04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 467
Score = 117 bits (251), Expect(2) = 6e-038
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = -3 / +1
Query: 197 SGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQV 18
S N G +GES+GAYIVRIP GPRDKY+ KE LWP++QEFVDGAL HI+ MSK LGEQ+
Sbjct: 88 SSENFGHELGESSGAYIVRIPFGPRDKYIPKEHLWPHIQEFVDGALVHIMQMSKVLGEQI 267
Query: 17 GNGRP 3
G+G+P
Sbjct: 268 GSGQP 282
Score = 58.3 bits (121), Expect(2) = 6e-038
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -3 / +1
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
R DL TRQ+S+PDVDWSYGEPTEML S++ G
Sbjct: 4 RGDLLTRQISAPDVDWSYGEPTEMLSPISSENFG 105
>gb|CW057648.1|CW057648 104_299_10518335_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518335, DNA
sequence
Length = 574
Score = 145 bits (311), Expect = 3e-034
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = -3 / +2
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEAL 96
RVDL TRQ+S PDVDW+YGEP EM+ D +G GAYIVR+PCGPRDKYL KE+L
Sbjct: 101 RVDLLTRQISCPDVDWTYGEPVEMITHHHADDGDLGSGGGAYIVRLPCGPRDKYLPKESL 280
Query: 95 WPYLQEFVDGALAHILNMSKALGEQV 18
WP++ EFVD ALAH+ N+++ALG+Q+
Sbjct: 281 WPHIPEFVDRALAHVTNVARALGDQL 358
>gb|CW434864.1|CW434864 fsbb001f150m06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150m06, DNA
sequence
Length = 490
Score = 145 bits (311), Expect = 3e-034
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEAL 96
RVDL TRQ+S PDVDW+YGEP EM+ D +G GAYIVR+PCGPRDKYL KE+L
Sbjct: 165 RVDLLTRQISCPDVDWTYGEPVEMITHHHADDGDLGSGGGAYIVRLPCGPRDKYLPKESL 344
Query: 95 WPYLQEFVDGALAHILNMSKALGEQV 18
WP++ EFVD ALAH+ N+++ALG+Q+
Sbjct: 345 WPHIPEFVDRALAHVTNVARALGDQL 422
>gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0076G02 3', DNA sequence
Length = 596
Score = 84.5 bits (178), Expect(2) = 4e-033
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
RVDLFTRQVSSPDVDWSYGEPTEMLCSGSND EG
Sbjct: 405 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDEEG 506
Score = 83.1 bits (175), Expect(2) = 3e-030
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = -1 / +1
Query: 277 TGWTSSLVKCHLLTWTGAMVSRRRCYAPVPTMERG 173
TGWTSSLVKCHLLTWTGAMVS+RRCYAP P M+RG
Sbjct: 403 TGWTSSLVKCHLLTWTGAMVSQRRCYAPDPMMKRG 507
Score = 75.8 bits (159), Expect(2) = 4e-033
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = -3 / +3
Query: 188 NDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQ 81
++ E GESAGAYIVRIPCG RDKYLKKEALWPYLQ
Sbjct: 489 SNDEEGGESAGAYIVRIPCGSRDKYLKKEALWPYLQ 596
Score = 71.2 bits (149), Expect(2) = 1e-026
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3 / -1
Query: 174 PLSIVGTGA*HLRRLTIAPVHVRR*HLTSEEVHP 275
PL I+G+GA*HLR LTIAPVHVRR*HLTSEEVHP
Sbjct: 506 PLFIIGSGA*HLRWLTIAPVHVRR*HLTSEEVHP 405
Score = 67.0 bits (140), Expect(2) = 4e-025
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -2 / +2
Query: 276 QGGPLHSSSVIS*RGLELW*ADGDVMLRFQRWRG 175
QGGPLHSSSVIS*RGLELW*A+GDVMLR Q RG
Sbjct: 404 QGGPLHSSSVIS*RGLELW*ANGDVMLRIQ**RG 505
Score = 66.6 bits (139), Expect(2) = 3e-030
Identities = 26/30 (86%), Positives = 26/30 (86%)
Frame = -2 / +2
Query: 171 G*ECRSLHCAHTVWTTG*IPQEGSTVALPP 82
G ECRSLHCAHTVW T *IPQEGS VALPP
Sbjct: 506 GRECRSLHCAHTVWVTR*IPQEGSAVALPP 595
Score = 66.6 bits (139), Expect(2) = 1e-026
Identities = 27/34 (79%), Positives = 27/34 (79%)
Frame = +2 / -3
Query: 83 GGKATVLPS*GIYPVVHTVCAQCRLRHSHPSPLH 184
GGKAT LPS*GIY V HTVCAQCRLRHS P H
Sbjct: 594 GGKATALPS*GIYRVTHTVCAQCRLRHSRPPLHH 493
Score = 65.2 bits (136), Expect(2) = 4e-025
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = -1 / +1
Query: 184 MERGWVRVPEPTLCAYRVDHGINTSRRKHCGLTS 83
M + RVPEPTLCAYRV H INTSRRK CGLTS
Sbjct: 493 MMKRGARVPEPTLCAYRVGHAINTSRRKRCGLTS 594
>gb|BF655583.1|BF655583 FM1_45_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 433
Score = 90.4 bits (191), Expect(2) = 8e-031
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = -3 / +3
Query: 197 SGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHI 51
S N G +GES+GAYIVRIP GPRDKY+ KE LWP++QEFVDGAL HI
Sbjct: 285 SSENFGHELGESSGAYIVRIPFGPRDKYIPKEHLWPHIQEFVDGALVHI 431
Score = 61.6 bits (128), Expect(2) = 8e-031
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = -3 / +3
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEG 174
RVDL TRQ+S+PDVDWSYGEPTEML S++ G
Sbjct: 201 RVDLLTRQISAPDVDWSYGEPTEMLSPISSENFG 302
>gb|BG462954.1|BG462954 EM1_46_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 576
Score = 108 bits (230), Expect(2) = 2e-028
Identities = 40/65 (61%), Positives = 52/65 (80%)
Frame = -3 / +1
Query: 197 SGSNDGEGMGESAGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQV 18
SG N + GE++GAYI+R+P GP+DKYL KE LWP++QEFVDGAL+HI+ MSKA+GE+
Sbjct: 73 SGKNSKQEKGENSGAYIIRLPFGPKDKYLAKEHLWPFIQEFVDGALSHIVRMSKAIGEET 252
Query: 17 GNGRP 3
G P
Sbjct: 253 GRVHP 267
Score = 35.9 bits (72), Expect(2) = 2e-028
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -3 / +1
Query: 260 TRQVSSPDVDWSYGEPTEMLCSGS 189
TRQ+ +P+ D SYGEP E+L S S
Sbjct: 4 TRQILAPNFDRSYGEPAELLVSTS 75
>gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 461
Score = 115 bits (245), Expect = 2e-025
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +1 / -1
Query: 1 TGLPFPTCSPRALDMLRICARAPSTNSWR*GHSASFLRYLSRGPHGMR 144
TG PFPTCSPRALDM RICARAPSTNSWR*GHSASFLRYLSRGPHG R
Sbjct: 146 TGFPFPTCSPRALDMFRICARAPSTNSWR*GHSASFLRYLSRGPHGPR 3
Score = 114 bits (244), Expect = 5e-025
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = -3 / +1
Query: 143 RIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
R PCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNG+P
Sbjct: 4 RGPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGKP 144
Score = 107 bits (229), Expect = 3e-023
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -2 / +3
Query: 138 TVWTTG*IPQEGSTVALPPRVCRWSSCAYP*HVQGSGRTGWKWEAS 1
TVW T *IPQEGS VALPPR+CRWSSCAYP HVQGSGR GWKWEAS
Sbjct: 9 TVWATR*IPQEGSAVALPPRICRWSSCAYPEHVQGSGRAGWKWEAS 146
Score = 100 bits (212), Expect = 8e-021
Identities = 40/46 (86%), Positives = 40/46 (86%)
Frame = +2 / -2
Query: 2 LASHFQPVLPEPWTC*GYAQELHRQTLGGKATVLPS*GIYPVVHTV 139
LASHFQP LPEPWTC GYAQELHRQ LGGKAT LPS*GIY V HTV
Sbjct: 145 LASHFQPALPEPWTCSGYAQELHRQILGGKATALPS*GIYRVAHTV 8
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 408,216,613
Number of Sequences: 832831
Number of extensions: 6065607
Number of successful extensions: 592459
Number of sequences better than 1.0e-020: 11
length of database: 163,786,556
effective HSP length: 50
effective length of database: 122,145,006
effective search space used: 5007945246
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)