TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 340 e-115
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 185 7e-060
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 185 7e-060
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 185 9e-059
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 185 3e-056
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 178 1e-055
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 210 1e-053
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 84 5e-049
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 184 9e-046
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 128 5e-044
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 171 1e-041
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 97 9e-038
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 155 6e-037
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 132 1e-036
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 96 2e-030
gb|CW434095.1|CW434095 fsbb001f149j24k0 Sorghum methylation... 67 6e-030
gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorgh... 103 1e-029
gb|CL700550.1|CL700550 SP__Ba0062J20.r SP__Ba Sorghum propi... 77 9e-026
gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorgh... 96 1e-025
gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorgh... 96 1e-025
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 340 bits (736), Expect(4) = e-115
Identities = 139/157 (88%), Positives = 145/157 (92%)
Frame = +1 / +2
Query: 49 ASGVSLLHALLVVFWALSSRRAEGQNPSGHLSVDASPQNARKIPDKMFGIFFEEINHAGA 228
AS + L + + WALSSR AEGQN +G LSV+ASPQNARKIPDKMFGIFFEEINHAGA
Sbjct: 26 ASLLRALVVVCALCWALSSRCAEGQNSNGQLSVNASPQNARKIPDKMFGIFFEEINHAGA 205
Query: 229 GGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCG 408
GGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLC
Sbjct: 206 GGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCA 385
Query: 409 SKKTNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
SKKTNACPSGGVGVYNPGYWGMNIEKGKVYKVSLH+R
Sbjct: 386 SKKTNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHIR 496
Score = 302 bits (653), Expect(4) = e-107
Identities = 127/154 (82%), Positives = 134/154 (87%)
Frame = -3 / -1
Query: 552 KGSSQGQCI**PNMQAHLINLPLFNVHAPVARIIDPNTSRWTGISFFRTTKNFHPKCNWV 373
+G+SQG C+**PNMQAHLINL FNVHAPV RIIDPNTS GISF R+TKNFHPKCN V
Sbjct: 529 QGNSQGHCV**PNMQAHLINLSFFNVHAPVTRIIDPNTS*RAGISFLRSTKNFHPKCNRV 350
Query: 372 TFKT*CPISSNNDT*FIPNDQPRINIRRCIRPTSLKSSVAYKLCPQPTSSSMVDLLEKDA 193
TFK *CPISSNNDT*FIPNDQP INI RCIRPT L+SSVAYKLCPQPTSSSMVDLLEKD
Sbjct: 349 TFKA*CPISSNNDT*FIPNDQPWINIGRCIRPTGLESSVAYKLCPQPTSSSMVDLLEKDT 170
Query: 192 KHLIRDLPSVLRRGIHAQVARWVLPLRTTRRQCP 91
KHLIRDLPS+L RGIH Q+ VLPLRT RRQCP
Sbjct: 169 KHLIRDLPSILWRGIHTQLTI*VLPLRTPRRQCP 68
Score = 292 bits (632), Expect(4) = e-103
Identities = 127/158 (80%), Positives = 136/158 (86%)
Frame = +2 / +3
Query: 77 CLLCSGHCLLVVRRGRTHLAT*AWMPRRRTLGRSLIRCLASFSRRSTMLELVGCGQSL*A 256
C C+GHCLL VRRGRT + +* MPR R LGRSLIRCL SFSRRSTMLELVGCGQSL*A
Sbjct: 54 CAPCAGHCLLGVRRGRTQMVS*V*MPRHRMLGRSLIRCLVSFSRRSTMLELVGCGQSL*A 233
Query: 257 TEDLRLVGLIHLRILIRG*SLGMNQVSLLELIGHHVLNVTQLHFGWKFFVVLKKLMPVHR 436
TED R VGLIHL ILI G*SLGMNQVSLLELIGHH LNVT+LHFGWKFFV+L+KLMP +
Sbjct: 234 TEDSRPVGLIHLPILIHG*SLGMNQVSLLELIGHHALNVTRLHFGWKFFVLLRKLMPARQ 413
Query: 437 EVLGSIILATGA*TLKRGRFIR*ACMLGHQMHCP*LLP 550
EVLGSIIL TGA*TLK+ RFIR*AC+LGHQ CP*L P
Sbjct: 414 EVLGSIILVTGA*TLKKERFIR*ACILGHQTQCP*LFP 527
Score = 257 bits (556), Expect(3) = 5e-089
Identities = 105/130 (80%), Positives = 110/130 (84%)
Frame = +3 / +1
Query: 72 CTACCVLGIVFSSCGGAEPIWPPERGCLAAER*EDP**DVWHLFRGDQPCWSWWVVGRAC 251
C VLGIVFS CGGAE W E CLA E *EDP**DVW+LFRGDQPCWSWWVVGRAC
Sbjct: 49 CCVRPVLGIVFSVCGGAELKWSAECECLATEC*EDP**DVWYLFRGDQPCWSWWVVGRAC 228
Query: 252 KQQRI*GWWA*YTFEY*SVADHWG*IKYHCWN*SDIMF*T*PSCTSDGSSLWF*KN*CLS 431
KQQRI G WA*YTF+Y*S+ADHWG*IKYHCWN*SDIM *T*P CTSDGSSL F*+N*CL
Sbjct: 229 KQQRIRGRWA*YTFQY*SMADHWG*IKYHCWN*SDIML*T*PGCTSDGSSLCF*EN*CLP 408
Query: 432 IGRCWGL*SW 461
+ RCWGL*SW
Sbjct: 409 VRRCWGL*SW 438
Score = 240 bits (519), Expect(4) = 2e-087
Identities = 104/120 (86%), Positives = 107/120 (89%)
Frame = -1 / -2
Query: 425 ALVFLEPQRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTS 246
ALVFLE QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSI EGVLGPPASNPLLLTS
Sbjct: 402 ALVFLEAQRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSILEGVLGPPASNPLLLTS 223
Query: 245 SAHNPPAPAWLISSKKMPNILSGIFLAFCGEASTLRWPDGFCPSARREDNAQNTTSSAWS 66
SAHNPPAPAWLISSKK+PNILSGIFLAFCGEA TL P FCPSA REDNAQ+ + S
Sbjct: 222 SAHNPPAPAWLISSKKIPNILSGIFLAFCGEAFTLS*PFEFCPSAHREDNAQHRAHTTTS 43
Score = 239 bits (517), Expect(3) = 3e-084
Identities = 108/154 (70%), Positives = 114/154 (74%)
Frame = -2 / -3
Query: 547 KQSRTVHLMT*HAGSPYKXXXXXXXXXXXQDYRPQHLPMDRH*FF*NHKELPSEVQLGYV 368
KQSRT+ LMT*+AGSPYK QDYRPQHL RH*F * HKELPSEVQ GYV
Sbjct: 524 KQSRTLCLMT*YAGSPYKPFLFQCSCPSNQDYRPQHLLTGRH*FS*KHKELPSEVQPGYV 345
Query: 367 QNMMSDQFQQ*YLIHPQ*SATDQYSKVY*AHQPQILCCLQALPTTHQLQHG*SPRKRCQT 188
Q+MMSDQFQQ*YLIHPQ*SA DQY KVY*AH+P+ILCCLQALPTTHQLQHG*SPRKR QT
Sbjct: 344 QSMMSDQFQQ*YLIHPQ*SAMDQYWKVY*AHRPRILCCLQALPTTHQLQHG*SPRKRYQT 165
Query: 187 SYQXXXXXXXXXXXXXXGQMGSAPPHDEKTMPRT 86
SYQ + SAPPH EKTMP T
Sbjct: 164 SYQGSS*HSVARHSHSADHLSSAPPHTEKTMPST 63
Score = 85.4 bits (180), Expect(4) = e-115
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +3 / +2
Query: 567 GYKKLAAHTITGSKKTFAKWTKVEFHLRSNQNNSNSR 677
G +KLAAHTITGSKKTFAKWTK+EFHLRSNQNN+NSR
Sbjct: 542 GLQKLAAHTITGSKKTFAKWTKIEFHLRSNQNNTNSR 652
Score = 78.0 bits (164), Expect(3) = 3e-084
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = -3 / -3
Query: 675 LSCCYFGWISNEILPLSILQRFSCYL*WYEQRAFCSPSELVKGSSQGQCI 526
LS CYFGWISNEIL LSILQRFSCYL*W EQ+ F L + S+ C+
Sbjct: 650 LSWCYFGWISNEILSLSILQRFSCYL*WCEQQVFVDHRSLSRKQSRTLCL 501
Score = 77.1 bits (162), Expect(4) = e-107
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1 / -1
Query: 677 P*VAVILVGSQMKFYLCPFCKGFLATCDGMSSE 579
P*V VILVGSQMKFYLCPFCKGFLATCDG+SS+
Sbjct: 652 P*VGVILVGSQMKFYLCPFCKGFLATCDGVSSK 554
Score = 70.7 bits (148), Expect(4) = e-103
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = +2 / +1
Query: 575 KARCSYHHR*QENLCKMDKGRISFEIQPK*QQLK 676
K CS+HHR*QENLCKMDK RISFEIQPK* QLK
Sbjct: 550 KTCCSHHHR*QENLCKMDKDRISFEIQPK*HQLK 651
Score = 68.0 bits (142), Expect(3) = 5e-089
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +1 / +3
Query: 574 KSSLLIPSQVARKPLQNGQR*NFI*DPTKITATQ 675
K+ LL PSQVARKPLQNGQR*NFI*DPTKIT TQ
Sbjct: 549 KNLLLTPSQVARKPLQNGQR*NFI*DPTKITPTQ 650
Score = 56.5 bits (117), Expect(4) = 2e-087
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 575 FVAHRSLSREAVKDSASDDLTCRLTL*TFPFSMFM 471
F L +E VKD+ SDDL CRLTL*TFPFSMFM
Sbjct: 552 FCRPSELVKETVKDTVSDDLICRLTL*TFPFSMFM 448
Score = 49.6 bits (102), Expect(4) = e-103
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3 / +1
Query: 33 NGRAESQWRVLAPCTACCV 89
NGRAESQWR LAPCT+CCV
Sbjct: 1 NGRAESQWRFLAPCTSCCV 57
Score = 49.2 bits (101), Expect(4) = 2e-087
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2 / -2
Query: 640 NSTFVHFAKVFLLPVMV*AASFL*P 566
NS FVHFAKVFLLPVMV*AASF P
Sbjct: 615 NSIFVHFAKVFLLPVMV*AASFCRP 541
Score = 45.5 bits (93), Expect(4) = e-107
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -2 / -3
Query: 91 RTQQAVHGARTRHWLSARP 35
RTQQ VHGAR RHWLSARP
Sbjct: 59 RTQQLVHGARKRHWLSARP 3
Score = 43.2 bits (88), Expect(3) = 5e-089
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2 / +3
Query: 35 WACREPVACPCSMHCLLCS 91
WACREP+A PCS+H LLC+
Sbjct: 3 WACREPMALPCSVH*LLCA 59
Score = 35.9 bits (72), Expect(4) = 2e-087
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -1 / -2
Query: 89 NTTSSAWSKDTPLALCTPI 33
+TT+SA SK+ PLALCTPI
Sbjct: 57 HTTTSARSKEAPLALCTPI 1
Score = 35.0 bits (70), Expect(3) = 3e-084
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3 / -1
Query: 87 HNKQCMEQGHATGSLHAH 34
HN C EQG A GSLHAH
Sbjct: 55 HNN*CTEQGSAIGSLHAH 2
Score = 25.8 bits (50), Expect(4) = e-115
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 507 PAC*VIRCTVLDCF 548
PA *VIR +VLDCF
Sbjct: 484 PAY*VIRHSVLDCF 525
Score = 24.9 bits (48), Expect(4) = e-115
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 546 FP*QAPMGYKKL 581
FP*QAPM YK L
Sbjct: 522 FP*QAPMVYKNL 557
Score = 23.1 bits (44), Expect(4) = e-107
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / -2
Query: 579 AFCSPSELVK 550
+FC PSELVK
Sbjct: 555 SFCRPSELVK 526
Score = 22.6 bits (43), Expect(4) = e-103
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 551 LTSSDGLQK 577
LTSSDGLQK
Sbjct: 527 LTSSDGLQK 553
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 185 bits (399), Expect(2) = 7e-060
Identities = 74/89 (83%), Positives = 81/89 (91%)
Frame = +1 / +2
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 206 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 385
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN VALRMEVLC
Sbjct: 386 GDDSSIFVATDRTSCFSRNIVALRMEVLC 472
Score = 150 bits (322), Expect(2) = 3e-041
Identities = 66/89 (74%), Positives = 72/89 (80%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPA
Sbjct: 471 QRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPA 292
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A CG ASTLR
Sbjct: 291 PAWLISSKNIPNNVSGIFRASCGVASTLR 205
Score = 66.6 bits (139), Expect(2) = 7e-060
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1 / +2
Query: 421 NACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
N CP+GGVGVYNPG+WGMNIE GK Y + ++V+
Sbjct: 473 NDCPAGGVGVYNPGFWGMNIEDGKAYNLVMYVK 571
Score = 39.6 bits (80), Expect(2) = 3e-041
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3 / -2
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWTGIS 418
N+ +++LP+F VHAP +++ NT+ WT I+
Sbjct: 568 NIHNKIVSLPIFYVHAPKTWVVNTNTTSWTVIT 470
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 185 bits (399), Expect(2) = 7e-060
Identities = 74/89 (83%), Positives = 81/89 (91%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 202 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 381
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN VALRMEVLC
Sbjct: 382 GDDSSIFVATDRTSCFSRNIVALRMEVLC 468
Score = 150 bits (322), Expect(2) = 3e-041
Identities = 66/89 (74%), Positives = 72/89 (80%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPA
Sbjct: 467 QRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPA 288
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A CG ASTLR
Sbjct: 287 PAWLISSKNIPNNVSGIFRASCGVASTLR 201
Score = 66.6 bits (139), Expect(2) = 7e-060
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 421 NACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
N CP+GGVGVYNPG+WGMNIE GK Y + ++V+
Sbjct: 469 NDCPAGGVGVYNPGFWGMNIEDGKAYNLVMYVK 567
Score = 39.6 bits (80), Expect(2) = 3e-041
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3 / -2
Query: 516 NMQAHLINLPLFNVHAPVARIIDPNTSRWTGIS 418
N+ +++LP+F VHAP +++ NT+ WT I+
Sbjct: 564 NIHNKIVSLPIFYVHAPKTWVVNTNTTSWTVIT 466
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 185 bits (399), Expect(2) = 9e-059
Identities = 74/89 (83%), Positives = 81/89 (91%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 174 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 353
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN VALRMEVLC
Sbjct: 354 GDDSSIFVATDRTSCFSRNIVALRMEVLC 440
Score = 150 bits (322), Expect(2) = 1e-040
Identities = 66/89 (74%), Positives = 72/89 (80%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPA
Sbjct: 439 QRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPA 260
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A CG ASTLR
Sbjct: 259 PAWLISSKNIPNNVSGIFRASCGVASTLR 173
Score = 62.9 bits (131), Expect(2) = 9e-059
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1 / +3
Query: 421 NACPSGGVGVYNPGYWGMNIEKGKVYKV 504
N CP+GGVGVYNPG+WGMNIE GK Y +
Sbjct: 441 NDCPAGGVGVYNPGFWGMNIEDGKAYNL 524
Score = 37.7 bits (76), Expect(2) = 1e-040
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3 / -3
Query: 501 LINLPLFNVHAPVARIIDPNTSRWTGIS 418
+++LP+F VHAP +++ NT+ WT I+
Sbjct: 521 IVSLPIFYVHAPKTWVVNTNTTSWTVIT 438
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 185 bits (399), Expect(2) = 3e-056
Identities = 74/89 (83%), Positives = 81/89 (91%)
Frame = +1 / +2
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 329 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 508
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN VALRMEVLC
Sbjct: 509 GDDSSIFVATDRTSCFSRNIVALRMEVLC 595
Score = 150 bits (322), Expect(2) = 2e-038
Identities = 66/89 (74%), Positives = 72/89 (80%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPA
Sbjct: 594 QRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPA 415
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A CG ASTLR
Sbjct: 414 PAWLISSKNIPNNVSGIFRASCGVASTLR 328
Score = 54.7 bits (113), Expect(2) = 3e-056
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1 / +2
Query: 421 NACPSGGVGVYNPGYWGMNIE 483
N CP+GGVGVYNPG+WGMNIE
Sbjct: 596 NDCPAGGVGVYNPGFWGMNIE 658
Score = 29.9 bits (59), Expect(2) = 2e-038
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3 / -1
Query: 486 LFNVHAPVARIIDPNTSRWTGIS 418
+F VHAP +++ NT+ WT I+
Sbjct: 661 IFYVHAPKTWVVNTNTTSWTVIT 593
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 178 bits (384), Expect(2) = 1e-055
Identities = 70/86 (81%), Positives = 79/86 (91%)
Frame = +1 / +1
Query: 148 DASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDE 327
+A+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW IIGD+
Sbjct: 202 EATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSIIGDD 381
Query: 328 SSIIVGTDRTSCFERNPVALRMEVLC 405
SSI + TDRTSCF RN VALRMEVLC
Sbjct: 382 SSIFMATDRTSCFSRNIVALRMEVLC 459
Score = 141 bits (302), Expect(2) = 4e-037
Identities = 62/86 (72%), Positives = 68/86 (79%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSV I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPA
Sbjct: 458 QRTSILRATMFRLKHDVRSVAMNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPA 279
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAS 147
PAWLISSK +PN +SGIF A CG AS
Sbjct: 278 PAWLISSKNIPNNVSGIFRASCGVAS 201
Score = 59.3 bits (123), Expect(2) = 1e-055
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1 / +1
Query: 421 NACPSGGVGVYNPGYWGMNIEKGK 492
N CP+GGVGVYNPG+WGMNIE GK
Sbjct: 460 NDCPAGGVGVYNPGFWGMNIEDGK 531
Score = 35.0 bits (70), Expect(2) = 4e-037
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3 / -1
Query: 492 LPLFNVHAPVARIIDPNTSRWTGIS 418
LP+F VHAP +++ NT+ WT I+
Sbjct: 531 LPIFYVHAPKTWVVNTNTTSWTVIT 457
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 210 bits (454), Expect = 1e-053
Identities = 79/97 (81%), Positives = 89/97 (91%)
Frame = +1 / +2
Query: 229 GGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCG 408
GGLWAELVSNRGFEAGG NTPSNIDPWLIIGDES+IIV TDR+SCF NP+ALRMEVLCG
Sbjct: 8 GGLWAELVSNRGFEAGGSNTPSNIDPWLIIGDESNIIVATDRSSCFASNPIALRMEVLCG 187
Query: 409 SKKTNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
+ NACPSGGVG+YNPGYWGMNIE+ KVY+V++H+R
Sbjct: 188 ASGANACPSGGVGIYNPGYWGMNIERTKVYRVTMHIR 298
Score = 132 bits (283), Expect = 5e-030
Identities = 59/99 (59%), Positives = 69/99 (69%)
Frame = -3 / -3
Query: 525 **PNMQAHLINLPLFNVHAPVARIIDPNTSRWTGISFFRTTKNFHPKCNWVTFKT*CPIS 346
**PN+ + INL FNVHAPV RI+D N+S W IS + K FHPKCNWVT KT PI
Sbjct: 304 **PNVHGNSINLCSFNVHAPVTRIVDSNSS*WASISSTSSAKYFHPKCNWVTSKTG*PIC 125
Query: 345 SNNDT*FIPNDQPRINIRRCIRPTSLKSSVAYKLCPQPT 229
+N+ FIPNDQP +N+ R IR TS K+SVA KL PQ T
Sbjct: 124 CHNNIGFIPNDQPWVNV*RSIRTTSFKTSVANKLRPQST 8
Score = 129 bits (276), Expect = 5e-029
Identities = 62/99 (62%), Positives = 70/99 (70%)
Frame = +2 / +3
Query: 230 VGCGQSL*ATEDLRLVGLIHLRILIRG*SLGMNQVSLLELIGHHVLNVTQLHFGWKFFVV 409
V CG+SL ATE L+LV LI L+ L G*SLGMN + L + IGH VL VTQLHFGWK+F
Sbjct: 9 VDCGRSLLATEVLKLVVLILLQTLTHG*SLGMNPILLWQQIGHPVLLVTQLHFGWKYFAE 188
Query: 410 LKKLMPVHREVLGSIILATGA*TLKRGRFIR*ACMLGHQ 526
L +LM H+E L S IL TGA*TLK RFI C LGHQ
Sbjct: 189 LVELMLAHQEELESTILVTGA*TLKEQRFIELPCTLGHQ 305
Score = 115 bits (246), Expect(2) = 5e-030
Identities = 51/67 (76%), Positives = 56/67 (83%)
Frame = -1 / -1
Query: 425 ALVFLEPQRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTS 246
AL L PQ TSIRSA GL +K D RSV T+ILDSSPMI+HGS+FEGVL PPAS PLLLTS
Sbjct: 204 ALAPLAPQSTSIRSAIGLLAKQDDRSVATIILDSSPMINHGSMFEGVLEPPASKPLLLTS 25
Query: 245 SAHNPPA 225
SAHNPP+
Sbjct: 24 SAHNPPS 4
Score = 109 bits (233), Expect = 4e-023
Identities = 46/77 (59%), Positives = 57/77 (74%)
Frame = +3 / +1
Query: 231 WVVGRACKQQRI*GWWA*YTFEY*SVADHWG*IKYHCWN*SDIMF*T*PSCTSDGSSLWF 410
W+VG AC QQR * WW *Y+F++* + DHWG*I+Y+C N S I+F *P+CTSDGS+L
Sbjct: 10 WIVGGAC*QQRF*SWWF*YSFKH*PMVDHWG*IQYYCGNRSVILFC**PNCTSDGSTLRS 189
Query: 411 *KN*CLSIGRCWGL*SW 461
* +*CL I R W L SW
Sbjct: 190 *WS*CLPIRRSWNLQSW 240
Score = 37.7 bits (76), Expect(2) = 5e-030
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -1 / -1
Query: 557 LSREAVKDSASDDLTCRLTL*TFPFSMFM 471
L +E V + SDDL C +TL*TF SMFM
Sbjct: 336 LVKETVSFTDSDDLMCMVTL*TFVLSMFM 250
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 84.0 bits (177), Expect(3) = 2e-030
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +1 / -2
Query: 49 ASGVSLLHALLVVFWALSSRRAEGQNPSGHLSVDASPQNARKIPDKMFGIFFE 207
AS + L + + WALSSR AEGQN +G LSV+ASPQNARKIPDKMFGIFFE
Sbjct: 565 ASLLRALVVVCALCWALSSRCAEGQNSNGQLSVNASPQNARKIPDKMFGIFFE 407
Score = 77.1 bits (162), Expect(4) = 7e-046
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = -1 / +3
Query: 209 SSKKMPNILSGIFLAFCGEASTLRWPDGFCPSARREDNAQNTTSSAWS 66
+SKK+PNILSGIFLAFCGEA TL P FCPSA REDNAQ+ + S
Sbjct: 405 TSKKIPNILSGIFLAFCGEAFTLS*PFEFCPSAHREDNAQHRAHTTTS 548
Score = 75.3 bits (158), Expect(4) = 5e-049
Identities = 31/44 (70%), Positives = 34/44 (77%)
Frame = +2 / -3
Query: 77 CLLCSGHCLLVVRRGRTHLAT*AWMPRRRTLGRSLIRCLASFSR 208
C C+GHCLL VRRGRT + +* MPR R LGRSLIRCL SFSR
Sbjct: 537 CAPCAGHCLLGVRRGRTQMVS*V*MPRHRMLGRSLIRCLVSFSR 406
Score = 72.5 bits (152), Expect(4) = 3e-039
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -3 / +2
Query: 207 LEKDAKHLIRDLPSVLRRGIHAQVARWVLPLRTTRRQCP 91
LEKD KHLIRDLPS+L RGIH Q+ VLPLRT RRQCP
Sbjct: 407 LEKDTKHLIRDLPSILWRGIHTQLTI*VLPLRTPRRQCP 523
Score = 71.2 bits (149), Expect(4) = 3e-042
Identities = 32/46 (69%), Positives = 33/46 (71%)
Frame = +3 / -1
Query: 72 CTACCVLGIVFSSCGGAEPIWPPERGCLAAER*EDP**DVWHLFRG 209
C VLGIVFS CGGAE W E CLA E *EDP**DVW+LFRG
Sbjct: 542 CCVRPVLGIVFSVCGGAELKWSAECECLATEC*EDP**DVWYLFRG 405
Score = 65.7 bits (137), Expect(4) = 5e-049
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +1 / -1
Query: 262 GFEAGGPNTPSNIDPWLIIGDESSI 336
GFEAGGPNTPSNIDPWLIIGDESSI
Sbjct: 77 GFEAGGPNTPSNIDPWLIIGDESSI 3
Score = 62.0 bits (129), Expect(4) = 7e-046
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -1 / +1
Query: 338 MILDSSPMISHGSIFEGVLGPPASNP 261
MILDSSPMISHGSI EGVLGPPASNP
Sbjct: 1 MILDSSPMISHGSILEGVLGPPASNP 78
Score = 58.8 bits (122), Expect(4) = 5e-049
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3 / -3
Query: 207 GDQPCWSWWVVGRACKQQR 263
GDQPCWSWWVVGRACKQQR
Sbjct: 243 GDQPCWSWWVVGRACKQQR 187
Score = 56.5 bits (117), Expect(4) = 3e-042
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / -3
Query: 261 RI*GWWA*YTFEY*SVADHWG*IKYH 338
RI G WA*YTF+Y*S+ADHWG*IKYH
Sbjct: 78 RIRGRWA*YTFQY*SMADHWG*IKYH 1
Score = 54.2 bits (112), Expect(4) = 5e-049
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 24 SSHNGRAESQWRVLAPCTACCV 89
S HNGRAESQWR LAPCT+CCV
Sbjct: 599 SLHNGRAESQWRFLAPCTSCCV 534
Score = 53.8 bits (111), Expect(4) = 7e-046
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -2 / +1
Query: 91 RTQQAVHGARTRHWLSARPLCEL 23
RTQQ VHGAR RHWLSARPLC+L
Sbjct: 532 RTQQLVHGARKRHWLSARPLCKL 600
Score = 53.8 bits (111), Expect(3) = 5e-021
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = -3 / +3
Query: 306 RINIRRCIRPTSLKSSVAYKLCPQPTSSSMVDLLEKDAK 190
++ + + +R + +SVAYKLCPQPTSSSMVDLL+ K
Sbjct: 144 QVQVSKQVRASFFTTSVAYKLCPQPTSSSMVDLLQVQPK 260
Score = 53.3 bits (110), Expect(4) = 3e-042
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +1 / -1
Query: 190 FGIFFEEINHAGAGGLWAELVSNRGFE 270
F ++ EINHAGAGGLWAELVSNRG E
Sbjct: 260 FWLYL*EINHAGAGGLWAELVSNRGSE 180
Score = 51.5 bits (106), Expect(4) = 3e-039
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3 / +3
Query: 336 DT*FIPNDQPRINIRRCIRPTSLKS 262
DT*FIPNDQP INI RCIRPT L+S
Sbjct: 3 DT*FIPNDQPWINIGRCIRPTGLES 77
Score = 50.6 bits (104), Expect(4) = 3e-039
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -2 / +2
Query: 262 LCCLQALPTTHQLQHG*SP 206
LCCLQALPTTHQLQHG*SP
Sbjct: 188 LCCLQALPTTHQLQHG*SP 244
Score = 50.6 bits (104), Expect(4) = 7e-046
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -1 / +1
Query: 272 ASNPLLLTSSAHNPPAPAWLIS 207
+S PLLLTSSAHNPPAPAWLIS
Sbjct: 178 SSLPLLLTSSAHNPPAPAWLIS 243
Score = 50.1 bits (103), Expect(4) = 3e-042
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2 / -3
Query: 23 *LTQWACREPVACPCSMHCLLCS 91
*LTQWACREP+A PCS+H LLC+
Sbjct: 600 *LTQWACREPMALPCSVH*LLCA 532
Score = 47.8 bits (98), Expect(3) = 5e-021
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = -2 / +1
Query: 211 SPRKRCQTSYQXXXXXXXXXXXXXXGQMGSAPPHDEKTMPRT 86
+PRKR QTSYQ + SAPPH EKTMP T
Sbjct: 403 TPRKRYQTSYQGSS*HSVARHSHSADHLSSAPPHTEKTMPST 528
Score = 46.0 bits (94), Expect(4) = 3e-039
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / +2
Query: 87 HNKQCMEQGHATGSLHAHCVSY 22
HN C EQG A GSLHAHCVSY
Sbjct: 536 HNN*CTEQGSAIGSLHAHCVSY 601
Score = 45.5 bits (93), Expect(3) = 2e-030
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -2
Query: 260 EDLRLVGLIHLRILIRG*SLGMNQVS 337
+D R VGLIHL ILI G*SLGMNQVS
Sbjct: 79 QDSRPVGLIHLPILIHG*SLGMNQVS 2
Score = 44.1 bits (90), Expect(3) = 2e-030
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -2
Query: 206 RRSTMLELVGCGQSL*ATE 262
RRSTMLELVGCGQSL*ATE
Sbjct: 244 RRSTMLELVGCGQSL*ATE 188
Score = 40.0 bits (81), Expect(3) = 5e-021
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 89 NTTSSAWSKDTPLALCTPIV*A 24
+TT+SA SK+ PLALCTPIV*A
Sbjct: 534 HTTTSARSKEAPLALCTPIV*A 599
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 184 bits (397), Expect = 9e-046
Identities = 76/94 (80%), Positives = 83/94 (88%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L+VDASPQ ARKIPD +FGIFFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 205 LTVDASPQLARKIPDTLFGIFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 384
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
GD+SSI V TDRTSCF RN +ALRMEVLC + T
Sbjct: 385 GDDSSIYVETDRTSCFSRNIIALRMEVLCDNCPT 486
Score = 149 bits (321), Expect = 3e-035
Identities = 65/89 (73%), Positives = 72/89 (80%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A R KHDVRSV T I +SSPM+ HGS+F+GV PPAS PLLLTSSAH PPA
Sbjct: 470 QRTSILRAMMFRLKHDVRSVSTYIEESSPMMDHGSMFDGVWRPPASKPLLLTSSAHMPPA 291
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSKK+PN +SGIF A CGEAST+R
Sbjct: 290 PAWLISSKKIPNSVSGIFRASCGEASTVR 204
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 128 bits (274), Expect(2) = 5e-044
Identities = 51/62 (82%), Positives = 54/62 (87%)
Frame = +1 / +3
Query: 130 SGHLSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPW 309
+ L+VD S QNA+ IP MFGIFFEEINHAGAGGLWAELVSNRGFEAGG NTPSNIDPW
Sbjct: 387 TAQLTVDVSSQNAQTIPGNMFGIFFEEINHAGAGGLWAELVSNRGFEAGGSNTPSNIDPW 566
Query: 310 LI 315
LI
Sbjct: 567 LI 572
Score = 108 bits (231), Expect(2) = 2e-032
Identities = 46/58 (79%), Positives = 49/58 (84%)
Frame = -1 / -2
Query: 314 ISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSGIFLAFCGEASTL 141
I+HGS+FEGVL PPAS PLLLTSSAHNPPAPAWLISSKKMPNI GI AF E ST+
Sbjct: 571 INHGSMFEGVLEPPASKPLLLTSSAHNPPAPAWLISSKKMPNIFPGIV*AF*DETSTV 398
Score = 87.2 bits (184), Expect(2) = 2e-027
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +3 / +2
Query: 147 GCLAAER*EDP**DVWHLFRGDQPCWSWWVVGRACKQQRI*GWWA*YTFEY*SVADHWG 323
GC +E ++P VWHL G+QPCWSWW+VG AC QQR * WW *Y+F++* + D G
Sbjct: 404 GCFISECSDNPWEYVWHLL*GNQPCWSWWIVGGAC*QQRF*SWWF*YSFKH*PMVDXLG 580
Score = 86.3 bits (182), Expect(2) = 8e-026
Identities = 38/63 (60%), Positives = 48/63 (76%)
Frame = -3 / -1
Query: 321 PNDQPRINIRRCIRPTSLKSSVAYKLCPQPTSSSMVDLLEKDAKHLIRDLPSVLRRGIHA 142
P DQP +N+ R IR TS K+SVA KL PQ TSSSMVD L++DAKH+ RD S+LR IH+
Sbjct: 578 PXDQPWVNV*RSIRTTSFKTSVANKLRPQSTSSSMVDFLKEDAKHIPRDCLSILR*NIHS 399
Query: 141 QVA 133
Q++
Sbjct: 398 QLS 390
Score = 70.7 bits (148), Expect(2) = 5e-044
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +1 / +1
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGSKKTNAC 429
GDES+IIV TDR+SCF NP+ALRMEVLCG+ NAC
Sbjct: 577 GDESNIIVATDRSSCFASNPIALRMEVLCGASGANAC 687
Score = 56.5 bits (117), Expect(2) = 2e-027
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2 / +2
Query: 317 LGMNQVSLLELIGHHVLNVTQLHFGWKFFVVLKKLM 424
LGMN + L + IGH VL VTQLHFGWK+F L +LM
Sbjct: 575 LGMNPILLWQQIGHPVLLVTQLHFGWKYFAELVELM 682
Score = 51.9 bits (107), Expect(2) = 8e-026
Identities = 25/36 (69%), Positives = 27/36 (75%)
Frame = -1 / -1
Query: 425 ALVFLEPQRTSIRSATGLRSKHDVRSVPTMILDSSP 318
AL L PQ TSIRSA GL +K D RSV T+ILDSSP
Sbjct: 683 ALAPLAPQSTSIRSAIGLLAKQDDRSVATIILDSSP 576
Score = 51.9 bits (107), Expect(2) = 2e-032
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -2 / -2
Query: 427 RH*FF*NHKELPSEVQLGYVQNMMSDQFQQ*YLIHPQ 317
+H* * K LPSEVQLGY QN M+D Q*Y IHPQ
Sbjct: 685 KH*LH*LRKVLPSEVQLGY*QNRMTDLLPQ*YWIHPQ 575
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 171 bits (367), Expect = 1e-041
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 202 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 381
Query: 319 GDESSIIVGTDRTSCFERNPVAL 387
GD+SSI V TDRTSCF RN VAL
Sbjct: 382 GDDSSIFVATDRTSCFSRNIVAL 450
Score = 141 bits (302), Expect = 1e-032
Identities = 61/82 (74%), Positives = 67/82 (81%)
Frame = -1 / -2
Query: 383 ATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISS 204
AT R KHDVRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPAPAWLISS
Sbjct: 446 ATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISS 267
Query: 203 KKMPNILSGIFLAFCGEASTLR 138
K +PN +SGIF A CG ASTLR
Sbjct: 266 KNIPNNVSGIFRASCGVASTLR 201
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 97.3 bits (206), Expect(4) = 9e-038
Identities = 40/53 (75%), Positives = 44/53 (83%)
Frame = +1 / -3
Query: 262 GFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
GFEAGG +TPSNIDPW IIGD+SSI V TDRTSCF RN +ALRMEVLC + T
Sbjct: 281 GFEAGGLHTPSNIDPWSIIGDDSSIYVETDRTSCFSRNIIALRMEVLCDNCPT 123
Score = 49.2 bits (101), Expect(4) = 9e-038
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 208 EINHAGAGGLWAELVSNRGFEA 273
EINHAGAGG+WAELVSNRG A
Sbjct: 528 EINHAGAGGIWAELVSNRGDSA 463
Score = 45.5 bits (93), Expect(4) = 9e-038
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1 / -3
Query: 427 CPSGGVGVYNPGYWGM 474
CP+GGVG+YNPG+WGM
Sbjct: 131 CPTGGVGIYNPGFWGM 84
Score = 24.4 bits (47), Expect(4) = 9e-038
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 178 PDKMFGIFFE 207
PD +FGIFFE
Sbjct: 693 PDTLFGIFFE 664
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 155 bits (333), Expect = 6e-037
Identities = 61/77 (79%), Positives = 69/77 (89%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 228 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 407
Query: 319 GDESSIIVGTDRTSCFE 369
GD+SSI V TDRT F+
Sbjct: 408 GDDSSIFVATDRTIMFQ 458
Score = 128 bits (274), Expect = 9e-029
Identities = 55/73 (75%), Positives = 61/73 (83%)
Frame = -1 / -3
Query: 356 VRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSG 177
VRSV T I +SSPM+ HGS+F+GV GPPAS PLLLTSSAH PPAPAWLISSK +PN +SG
Sbjct: 445 VRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSG 266
Query: 176 IFLAFCGEASTLR 138
IF A CG ASTLR
Sbjct: 265 IFRASCGVASTLR 227
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 132 bits (283), Expect(2) = 1e-036
Identities = 51/61 (83%), Positives = 57/61 (93%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDA+PQ ARKIP+ +FGIFFEEINHAGAGG+WAELV+NRGFEAGGP+TPSNIDPW II
Sbjct: 474 LKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSII 653
Query: 319 G 321
G
Sbjct: 654 G 656
Score = 114 bits (244), Expect(2) = 1e-027
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = -1 / -3
Query: 320 PMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSGIFLAFCGEASTL 141
PM+ HGS+F+GV GPPAS PLLLTSSAH PPAPAWLISSK +PN +SGIF A CG ASTL
Sbjct: 655 PMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVASTL 476
Query: 140 R 138
R
Sbjct: 475 R 473
Score = 41.8 bits (85), Expect(2) = 1e-036
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1 / +1
Query: 316 IGDESSIIVGTDRTSCFERNPVA 384
+GD+SSI + TDRTSCF RN VA
Sbjct: 652 LGDDSSIFMATDRTSCFSRNIVA 720
Score = 29.9 bits (59), Expect(2) = 1e-027
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / -2
Query: 383 ATGLRSKHDVRSVPTMILDSSP 318
AT R KHDVRSV I +SSP
Sbjct: 719 ATMFRLKHDVRSVAMNIEESSP 654
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 96.4 bits (204), Expect(4) = 2e-030
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = +1 / -3
Query: 244 ELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
+++ GFEAGGP TPSNIDPW IIGDESSI V T+ SCF RN VALRMEVLC + +T
Sbjct: 14191 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRT 14015
Score = 46.4 bits (95), Expect(4) = 2e-030
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -1
Query: 208 EINHAGAGGLWAELVSNRG 264
EINHAGAGG+W ELVSNRG
Sbjct: 14712 EINHAGAGGIWEELVSNRG 14656
Score = 41.4 bits (84), Expect(4) = 2e-030
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / -3
Query: 427 CPSGGVGVYNPGYWGM 474
C +GGVG+YNPG+WGM
Sbjct: 14023 CRTGGVGIYNPGFWGM 13976
Score = 29.9 bits (59), Expect(4) = 2e-030
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1 / -3
Query: 118 GQNPSGHLSVDASPQNARKIPDKMFGIFFE 207
G S L VD S R+IP +FG+FFE
Sbjct: 15310 GCTQSATLDVDVSWCFRREIPKTLFGLFFE 15221
>gb|CW434095.1|CW434095 fsbb001f149j24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149j24, DNA
sequence
Length = 594
Score = 66.6 bits (139), Expect(4) = 6e-030
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3 / -2
Query: 591 TITGSKKTFAKWTKVEFHLRSNQNNSNSR 677
T GSKKTFAKWTK+EFHLRSNQNN+NSR
Sbjct: 203 TFRGSKKTFAKWTKIEFHLRSNQNNTNSR 117
Score = 63.4 bits (132), Expect(4) = 1e-024
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -1 / +3
Query: 677 P*VAVILVGSQMKFYLCPFCKGFLATCD 594
P*V VILVGSQMKFYLCPFCKGFLAT +
Sbjct: 117 P*VGVILVGSQMKFYLCPFCKGFLATSE 200
Score = 51.0 bits (105), Expect(4) = 1e-024
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -3 / +2
Query: 552 KGSSQGQCI**PNMQAHLINLPLFNV 475
+G+SQG C+**PNMQAHLINL FNV
Sbjct: 326 QGNSQGHCV**PNMQAHLINLSFFNV 403
Score = 49.2 bits (101), Expect(4) = 6e-030
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1 / -1
Query: 427 CPSGGVGVYNPGYWGM 474
CPSGGVGVYNPGYWGM
Sbjct: 594 CPSGGVGVYNPGYWGM 547
Score = 48.3 bits (99), Expect(4) = 6e-030
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +2 / -1
Query: 476 TLKRGRFIR*ACMLGHQMHCP*LLP 550
TLK+ RFIR*AC+LGHQ CP*L P
Sbjct: 402 TLKKERFIR*ACILGHQTQCP*LFP 328
Score = 32.2 bits (64), Expect(4) = 1e-024
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3 / +1
Query: 474 HAPVARIIDPNTS 436
HAPV RIIDPNTS
Sbjct: 547 HAPVTRIIDPNTS 585
Score = 24.9 bits (48), Expect(4) = 6e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 546 FP*QAPMGYKKL 581
FP*QAPM YK L
Sbjct: 333 FP*QAPMVYKNL 298
Score = 24.0 bits (46), Expect(4) = 1e-024
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / +2
Query: 586 AASFL*PIGACQG 548
++ FL* IGACQG
Sbjct: 293 SSKFL*TIGACQG 331
>gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 616
Score = 103 bits (219), Expect(2) = 1e-029
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / -3
Query: 262 GFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLC 405
GFEAGGP+TPSNIDPW IIGD+SSI V TDRTSCF RN VALRMEVLC
Sbjct: 584 GFEAGGPHTPSNIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLC 441
Score = 47.8 bits (98), Expect(2) = 1e-029
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 421 NACPSGGVGVYNPGYWGM 474
N CP+GGVGVYNPG+WGM
Sbjct: 440 NDCPAGGVGVYNPGFWGM 387
>gb|CL700550.1|CL700550 SP__Ba0062J20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0062J20 3', DNA sequence
Length = 578
Score = 77.1 bits (162), Expect(2) = 3e-024
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = -1 / -2
Query: 209 SSKKMPNILSGIFLAFCGEASTLRWPDGFCPSARREDNAQNTTSSAWS 66
+SKK+PNILSGIFLAFCGEA TL P FCPSA REDNAQ+ + S
Sbjct: 394 TSKKIPNILSGIFLAFCGEAFTLS*PFEFCPSAHREDNAQHRAHTTTS 251
Score = 75.3 bits (158), Expect(3) = 9e-026
Identities = 31/44 (70%), Positives = 34/44 (77%)
Frame = +2 / +1
Query: 77 CLLCSGHCLLVVRRGRTHLAT*AWMPRRRTLGRSLIRCLASFSR 208
C C+GHCLL VRRGRT + +* MPR R LGRSLIRCL SFSR
Sbjct: 262 CAPCAGHCLLGVRRGRTQMVS*V*MPRHRMLGRSLIRCLVSFSR 393
Score = 72.5 bits (152), Expect(2) = 4e-021
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -3 / -1
Query: 207 LEKDAKHLIRDLPSVLRRGIHAQVARWVLPLRTTRRQCP 91
LEKD KHLIRDLPS+L RGIH Q+ VLPLRT RRQCP
Sbjct: 392 LEKDTKHLIRDLPSILWRGIHTQLTI*VLPLRTPRRQCP 276
Score = 71.2 bits (149), Expect(3) = 1e-022
Identities = 32/46 (69%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 72 CTACCVLGIVFSSCGGAEPIWPPERGCLAAER*EDP**DVWHLFRG 209
C VLGIVFS CGGAE W E CLA E *EDP**DVW+LFRG
Sbjct: 257 CCVRPVLGIVFSVCGGAELKWSAECECLATEC*EDP**DVWYLFRG 394
Score = 57.4 bits (119), Expect(3) = 9e-026
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3 / +2
Query: 18 SRSSHNGRAESQWRVLAPCTACCV 89
+ SSHNGRAESQWR LAPCT+CCV
Sbjct: 194 AHSSHNGRAESQWRFLAPCTSCCV 265
Score = 55.6 bits (115), Expect(2) = 3e-024
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -2 / -3
Query: 91 RTQQAVHGARTRHWLSARPLCEL 23
RTQQ VHGAR RHWLSARPLCEL
Sbjct: 267 RTQQLVHGARKRHWLSARPLCEL 199
Score = 53.8 bits (111), Expect(3) = 1e-022
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2 / +1
Query: 20 S*LTQWACREPVACPCSMHCLLCS 91
S*LTQWACREP+A PCSMH LLC+
Sbjct: 196 S*LTQWACREPMALPCSMH*LLCA 267
Score = 49.6 bits (102), Expect(2) = 4e-021
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 87 HNKQCMEQGHATGSLHAHCVSYD 19
HN CMEQG A GSLHAHCVSY+
Sbjct: 263 HNN*CMEQGSAIGSLHAHCVSYE 195
Score = 24.9 bits (48), Expect(3) = 9e-026
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +1
Query: 207 GDQPCWS 227
GDQPCWS
Sbjct: 556 GDQPCWS 576
Score = 22.1 bits (42), Expect(3) = 1e-022
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 190 FGIFFEEINHAGA 228
F ++ EINHAGA
Sbjct: 539 FWLYL*EINHAGA 577
>gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154749, DNA
sequence
Length = 731
Score = 96.4 bits (204), Expect(2) = 1e-025
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = +1 / +2
Query: 244 ELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
+++ GFEAGGP TPSNIDPW IIGDESSI V T+ SCF RN VALRMEVLC + +T
Sbjct: 209 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRT 385
Score = 41.4 bits (84), Expect(2) = 1e-025
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / +2
Query: 427 CPSGGVGVYNPGYWGM 474
C +GGVG+YNPG+WGM
Sbjct: 377 CRTGGVGIYNPGFWGM 424
>gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187778, DNA
sequence
Length = 654
Score = 96.4 bits (204), Expect(2) = 1e-025
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = +1 / +3
Query: 244 ELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
+++ GFEAGGP TPSNIDPW IIGDESSI V T+ SCF RN VALRMEVLC + +T
Sbjct: 384 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRT 560
Score = 41.4 bits (84), Expect(2) = 1e-025
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGM 474
C +GGVG+YNPG+WGM
Sbjct: 552 CRTGGVGIYNPGFWGM 599
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 933,391,224
Number of Sequences: 832831
Number of extensions: 14755777
Number of successful extensions: 130208
Number of sequences better than 1.0e-020: 23
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20317139622
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)