TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 319 2e-086
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 302 4e-081
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 270 1e-071
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 255 3e-067
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 176 2e-066
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 244 1e-063
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 211 8e-054
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 124 4e-051
gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorgh... 158 1e-045
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 180 1e-044
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 152 4e-044
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 141 9e-042
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 159 8e-040
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 136 2e-039
gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorgh... 85 6e-038
gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle... 154 1e-036
gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed see... 85 2e-036
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 109 4e-033
gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorgh... 141 9e-033
gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorgh... 141 9e-033
gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle... 138 6e-032
gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle... 138 6e-032
gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficien... 121 8e-027
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 63 2e-022
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 319 bits (693), Expect = 2e-086
Identities = 125/152 (82%), Positives = 141/152 (92%)
Frame = +1 / +2
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 182 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 361
Query: 301 NIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDG 480
NIDPW I+GDDSS++V TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YNPGFWGMNIEDG
Sbjct: 362 NIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYNPGFWGMNIEDG 541
Query: 481 KTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
K Y+LVMYVKSP+TT LTVSLTSSDGLQNLAS
Sbjct: 542 KAYNLVMYVKSPETTDLTVSLTSSDGLQNLAS 637
Score = 258 bits (559), Expect = 4e-068
Identities = 113/149 (75%), Positives = 117/149 (78%)
Frame = -2 / -3
Query: 575 EARFCNPSELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQRTSI 396
EA+FCNPSELV+ETVK VV GDLTYITR FPSSMFMPQ PGL* PTPPAGQSLQRTSI
Sbjct: 636 EAKFCNPSELVNETVKSVVSGDLTYITRL*AFPSSMFMPQKPGL*TPTPPAGQSLQRTSI 457
Query: 395 LRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPPWPI 216
LRATMFRLKHD GSMFDGV GPPASKPLLLTSSAH+PPAP W I
Sbjct: 456 LRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLI 277
Query: 215 SSKNTPRNVSGIFRASFGEASTLRVTIWV 129
SSKN P NVSGIFRAS G ASTLRV +WV
Sbjct: 276 SSKNIPNNVSGIFRASCGVASTLRVAVWV 190
Score = 212 bits (459), Expect = 2e-054
Identities = 90/153 (58%), Positives = 108/153 (70%)
Frame = +3 / +1
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 178 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 357
Query: 297 IEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRR 476
I+H*P+ H W LL + GD*S++MFQ KH CS+DGGPL *L W CW LQP LGHEHRR
Sbjct: 358 IKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQPRFLGHEHRR 537
Query: 477 WKDISSSYVC*VAKNHMLDSFADKL*WVAESGF 575
W+ + S YVC*V+ N+ +SF +KL* +A+ GF
Sbjct: 538 WEGLQSCYVC*VSGNNGFNSFINKL*RIAKLGF 636
Score = 200 bits (431), Expect = 2e-050
Identities = 93/156 (59%), Positives = 109/156 (69%)
Frame = -1 / -2
Query: 579 T*SQILQPIRACQRNCQACGFWRLNIHN*MICLSIFYVHAPESRVVNANTASRAVIAEDL 400
+*SQ+LQ +RAC NC F RLNIHN ++ L IFYVHAP++ VVN NT S VI EDL
Sbjct: 640 S*SQVLQSVRAC**NC*IRCFRRLNIHNKIVSLPIFYVHAPKTWVVNTNTTSWTVITEDL 461
Query: 399 HP*SNDVSTET*RTISLHIDGGVVPNDEPGVNVRWSIGASCFETSVADQFCPYPTSSSVA 220
HP SN+VS ET* TIS H GV+ ND P VNV WS+ AS FETSV D+ CPY T +
Sbjct: 460 HPQSNNVSAET*CTISRHEYRGVISNDGPRVNV*WSMRASSFETSVIDKLCPYATGPCMV 281
Query: 219 HLLKEHPKECIGDLSSKLWRGINLEGYHLG*IQT*R 112
+LLK++PK C DL KLWRGINLEG LG + *R
Sbjct: 280 NLLKKYPK*CFRDLPGKLWRGINLEGCCLGGLYF*R 173
Score = 184 bits (397), Expect = 9e-046
Identities = 94/150 (62%), Positives = 101/150 (67%)
Frame = +2 / +3
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSRLMPR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT
Sbjct: 192 PRQQPSRLMPRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLT 371
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*KMERHI 490
G SL TP WRLIV HVS ET LL*GWRSS MT +L VL FTT GA*T*KM R
Sbjct: 372 RGPSLEMTPLYSWRLIVHHVSAETLLL*GWRSSVMTVQLVVLVFTTQVFGA*T*KMGRLT 551
Query: 491 I*LCMLSRQKPHA*QFR*QALMGCRIWLQV 580
I LCMLS +K *QF *QAL C+ WLQ+
Sbjct: 552 ILLCMLSLRKQRI*QFH*QALTDCKTWLQL 641
Score = 94.4 bits (200), Expect(2) = 2e-037
Identities = 44/74 (59%), Positives = 47/74 (63%)
Frame = -3 / -1
Query: 577 LKPDSATHQSLSAKLSSMWFLAT*HT*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCRGPP 398
LKP A QSL KL + F T*HT* D HLLCSCP+ GCK QH Q SH RGPP
Sbjct: 638 LKPSFAIRQSLLMKLLNPLFPET*HT*QDCKPSHLLCSCPKNLGCKHQHHQLDSHYRGPP 459
Query: 397 SLEQRCFD*NMTND 356
S EQ+CF *NM D
Sbjct: 458 SSEQQCFG*NMMYD 417
Score = 82.0 bits (173), Expect(2) = 2e-037
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -3 / -1
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALARHQP*GLPSG 131
GQC MEY GL LRNLC * LPI H+ L G SPQ+ Q M++GS QA+A HQP*GL SG
Sbjct: 371 GQCLMEYEGLQLRNLCY*QALPICHRPLHG*SPQKISQIMFQGSSGQAVAWHQP*GLLSG 192
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 302 bits (654), Expect = 4e-081
Identities = 117/144 (81%), Positives = 133/144 (92%)
Frame = +1 / +1
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 178 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 357
Query: 301 NIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDG 480
NIDPW I+GDDSS++V TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YNPGFWGMNIEDG
Sbjct: 358 NIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYNPGFWGMNIEDG 537
Query: 481 KTYHLVMYVKSPKTTCLTVSLTSS 552
K Y+LVMYVKSP+TT LTVSLTSS
Sbjct: 538 KAYNLVMYVKSPETTDLTVSLTSS 609
Score = 238 bits (516), Expect = 3e-062
Identities = 106/141 (75%), Positives = 109/141 (77%)
Frame = -2 / -3
Query: 551 ELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRL 372
ELV+ETVK VV GDLTYITR FPSSMFMPQ PGL* PTPPAGQSLQRTSILRATMFRL
Sbjct: 608 ELVNETVKSVVSGDLTYITRL*AFPSSMFMPQKPGL*TPTPPAGQSLQRTSILRATMFRL 429
Query: 371 KHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRN 192
KHD GSMFDGV GPPASKPLLLTSSAH+PPAP W ISSKN P N
Sbjct: 428 KHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNN 249
Query: 191 VSGIFRASFGEASTLRVTIWV 129
VSGIFRAS G ASTLRV +WV
Sbjct: 248 VSGIFRASCGVASTLRVAVWV 186
Score = 205 bits (443), Expect = 4e-052
Identities = 86/145 (59%), Positives = 102/145 (70%)
Frame = +3 / +3
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 174 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 353
Query: 297 IEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRR 476
I+H*P+ H W LL + GD*S++MFQ KH CS+DGGPL *L W CW LQP LGHEHRR
Sbjct: 354 IKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQPRFLGHEHRR 533
Query: 477 WKDISSSYVC*VAKNHMLDSFADKL 551
W+ + S YVC*V+ N+ +SF +KL
Sbjct: 534 WEGLQSCYVC*VSGNNGFNSFINKL 608
Score = 188 bits (406), Expect = 5e-047
Identities = 88/147 (59%), Positives = 101/147 (68%)
Frame = -1 / -2
Query: 552 RACQRNCQACGFWRLNIHN*MICLSIFYVHAPESRVVNANTASRAVIAEDLHP*SNDVST 373
RAC NC F RLNIHN ++ L IFYVHAP++ VVN NT S VI EDLHP SN+VS
Sbjct: 609 RAC**NC*IRCFRRLNIHNKIVSLPIFYVHAPKTWVVNTNTTSWTVITEDLHPQSNNVSA 430
Query: 372 ET*RTISLHIDGGVVPNDEPGVNVRWSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKE 193
ET* TIS H GV+ ND P VNV WS+ AS FETSV D+ CPY T + +LLK++PK
Sbjct: 429 ET*CTISRHEYRGVISNDGPRVNV*WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK* 250
Query: 192 CIGDLSSKLWRGINLEGYHLG*IQT*R 112
C DL KLWRGINLEG LG + *R
Sbjct: 249 CFRDLPGKLWRGINLEGCCLGGLYF*R 169
Score = 171 bits (368), Expect = 9e-042
Identities = 90/141 (63%), Positives = 95/141 (67%)
Frame = +2 / +2
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSRLMPR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT
Sbjct: 188 PRQQPSRLMPRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLT 367
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*KMERHI 490
G SL TP WRLIV HVS ET LL*GWRSS MT +L VL FTT GA*T*KM R
Sbjct: 368 RGPSLEMTPLYSWRLIVHHVSAETLLL*GWRSSVMTVQLVVLVFTTQVFGA*T*KMGRLT 547
Query: 491 I*LCMLSRQKPHA*QFR*QAL 553
I LCMLS +K *QF *QAL
Sbjct: 548 ILLCMLSLRKQRI*QFH*QAL 610
Score = 86.6 bits (183), Expect(2) = 5e-035
Identities = 40/66 (60%), Positives = 43/66 (65%)
Frame = -3 / -1
Query: 553 QSLSAKLSSMWFLAT*HT*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCRGPPSLEQRCFD 374
QSL KL + F T*HT* D HLLCSCP+ GCK QH Q SH RGPPS EQ+CF
Sbjct: 610 QSLLMKLLNPLFPET*HT*QDCKPSHLLCSCPKNLGCKHQHHQLDSHYRGPPSSEQQCFG 431
Query: 373 *NMTND 356
*NM D
Sbjct: 430 *NMMYD 413
Score = 82.0 bits (173), Expect(2) = 5e-035
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -3 / -1
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALARHQP*GLPSG 131
GQC MEY GL LRNLC * LPI H+ L G SPQ+ Q M++GS QA+A HQP*GL SG
Sbjct: 367 GQCLMEYEGLQLRNLCY*QALPICHRPLHG*SPQKISQIMFQGSSGQAVAWHQP*GLLSG 188
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 270 bits (585), Expect = 1e-071
Identities = 102/127 (80%), Positives = 117/127 (92%)
Frame = +1 / +3
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 150 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 329
Query: 301 NIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDG 480
NIDPW I+GDDSS++V TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YNPGFWGMNIEDG
Sbjct: 330 NIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYNPGFWGMNIEDG 509
Query: 481 KTYHLVM 501
K Y+LVM
Sbjct: 510 KAYNLVM 530
Score = 211 bits (457), Expect = 5e-054
Identities = 93/125 (74%), Positives = 95/125 (76%)
Frame = -2 / -1
Query: 503 YITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXX 324
YITR FPSSMFMPQ PGL* PTPPAGQSLQRTSILRATMFRLKHD
Sbjct: 532 YITRL*AFPSSMFMPQKPGL*TPTPPAGQSLQRTSILRATMFRLKHDVRSVATNIEESSP 353
Query: 323 XXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGIFRASFGEASTLR 144
GSMFDGV GPPASKPLLLTSSAH+PPAP W ISSKN P NVSGIFRAS G ASTLR
Sbjct: 352 MMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVASTLR 173
Query: 143 VTIWV 129
V +WV
Sbjct: 172 VAVWV 158
Score = 188 bits (406), Expect = 5e-047
Identities = 78/129 (60%), Positives = 90/129 (69%)
Frame = +3 / +2
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 146 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 325
Query: 297 IEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRR 476
I+H*P+ H W LL + GD*S++MFQ KH CS+DGGPL *L W CW LQP LGHEHRR
Sbjct: 326 IKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQPRFLGHEHRR 505
Query: 477 WKDISSSYV 503
W+ + S YV
Sbjct: 506 WEGLQSCYV 532
Score = 172 bits (370), Expect = 5e-042
Identities = 78/130 (60%), Positives = 91/130 (70%)
Frame = -1 / -3
Query: 501 HN*MICLSIFYVHAPESRVVNANTASRAVIAEDLHP*SNDVSTET*RTISLHIDGGVVPN 322
HN ++ L IFYVHAP++ VVN NT S VI EDLHP SN+VS ET* TIS H GV+ N
Sbjct: 530 HNKIVSLPIFYVHAPKTWVVNTNTTSWTVITEDLHPQSNNVSAET*CTISRHEYRGVISN 351
Query: 321 DEPGVNVRWSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKECIGDLSSKLWRGINLEG 142
D P VNV WS+ AS FETSV D+ CPY T + +LLK++PK C DL KLWRGINLEG
Sbjct: 350 DGPRVNV*WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK*CFRDLPGKLWRGINLEG 171
Query: 141 YHLG*IQT*R 112
LG + *R
Sbjct: 170 CCLGGLYF*R 141
Score = 152 bits (327), Expect = 4e-036
Identities = 79/124 (63%), Positives = 83/124 (66%)
Frame = +2 / +1
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSRLMPR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT
Sbjct: 160 PRQQPSRLMPRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLT 339
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*KMERHI 490
G SL TP WRLIV HVS ET LL*GWRSS MT +L VL FTT GA*T*KM R
Sbjct: 340 RGPSLEMTPLYSWRLIVHHVSAETLLL*GWRSSVMTVQLVVLVFTTQVFGA*T*KMGRLT 519
Query: 491 I*LC 502
I LC
Sbjct: 520 ILLC 531
Score = 82.0 bits (173), Expect(2) = 6e-031
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -3 / -2
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALARHQP*GLPSG 131
GQC MEY GL LRNLC * LPI H+ L G SPQ+ Q M++GS QA+A HQP*GL SG
Sbjct: 339 GQCLMEYEGLQLRNLCY*QALPICHRPLHG*SPQKISQIMFQGSSGQAVAWHQP*GLLSG 160
Score = 72.9 bits (153), Expect(2) = 6e-031
Identities = 31/49 (63%), Positives = 33/49 (67%)
Frame = -3 / -2
Query: 502 T*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCRGPPSLEQRCFD*NMTND 356
T* D HLLCSCP+ GCK QH Q SH RGPPS EQ+CF *NM D
Sbjct: 531 T*QDCKPSHLLCSCPKNLGCKHQHHQLDSHYRGPPSSEQQCFG*NMMYD 385
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 255 bits (553), Expect = 3e-067
Identities = 96/119 (80%), Positives = 110/119 (92%)
Frame = +1 / +2
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 305 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 484
Query: 301 NIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIED 477
NIDPW I+GDDSS++V TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YNPGFWGMNIED
Sbjct: 485 NIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYNPGFWGMNIED 661
Score = 200 bits (431), Expect = 2e-050
Identities = 87/116 (75%), Positives = 89/116 (76%)
Frame = -2 / -2
Query: 476 SSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFD 297
SSMFMPQ PGL* PTPPAGQSLQRTSILRATMFRLKHD GSMFD
Sbjct: 660 SSMFMPQKPGL*TPTPPAGQSLQRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFD 481
Query: 296 GVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGIFRASFGEASTLRVTIWV 129
GV GPPASKPLLLTSSAH+PPAP W ISSKN P NVSGIFRAS G ASTLRV +WV
Sbjct: 480 GV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVASTLRVAVWV 313
Score = 176 bits (379), Expect = 3e-043
Identities = 74/120 (61%), Positives = 84/120 (70%)
Frame = +3 / +1
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 301 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 480
Query: 297 IEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRR 476
I+H*P+ H W LL + GD*S++MFQ KH CS+DGGPL *L W CW LQP LGHEHRR
Sbjct: 481 IKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQPRFLGHEHRR 660
Score = 164 bits (354), Expect = 7e-040
Identities = 75/122 (61%), Positives = 86/122 (70%)
Frame = -1 / -1
Query: 477 IFYVHAPESRVVNANTASRAVIAEDLHP*SNDVSTET*RTISLHIDGGVVPNDEPGVNVR 298
IFYVHAP++ VVN NT S VI EDLHP SN+VS ET* TIS H GV+ ND P VNV
Sbjct: 661 IFYVHAPKTWVVNTNTTSWTVITEDLHPQSNNVSAET*CTISRHEYRGVISNDGPRVNV* 482
Query: 297 WSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKECIGDLSSKLWRGINLEGYHLG*IQT 118
WS+ AS FETSV D+ CPY T + +LLK++PK C DL KLWRGINLEG LG +
Sbjct: 481 WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK*CFRDLPGKLWRGINLEGCCLGGLYF 302
Query: 117 *R 112
*R
Sbjct: 301 *R 296
Score = 144 bits (310), Expect = 9e-034
Identities = 74/115 (64%), Positives = 78/115 (67%)
Frame = +2 / +3
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSRLMPR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT
Sbjct: 315 PRQQPSRLMPRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLT 494
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*K 475
G SL TP WRLIV HVS ET LL*GWRSS MT +L VL FTT GA*T*K
Sbjct: 495 RGPSLEMTPLYSWRLIVHHVSAETLLL*GWRSSVMTVQLVVLVFTTQVFGA*T*K 659
Score = 82.0 bits (173), Expect(2) = 2e-029
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -3 / -3
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALARHQP*GLPSG 131
GQC MEY GL LRNLC * LPI H+ L G SPQ+ Q M++GS QA+A HQP*GL SG
Sbjct: 494 GQCLMEYEGLQLRNLCY*QALPICHRPLHG*SPQKISQIMFQGSSGQAVAWHQP*GLLSG 315
Score = 67.9 bits (142), Expect(2) = 2e-029
Identities = 27/40 (67%), Positives = 29/40 (72%)
Frame = -3 / -3
Query: 475 LLCSCPRIQGCKCQHRQPGSHCRGPPSLEQRCFD*NMTND 356
LLCSCP+ GCK QH Q SH RGPPS EQ+CF *NM D
Sbjct: 659 LLCSCPKNLGCKHQHHQLDSHYRGPPSSEQQCFG*NMMYD 540
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 176 bits (380), Expect(2) = 2e-066
Identities = 69/89 (77%), Positives = 78/89 (87%)
Frame = +1 / +2
Query: 145 LKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIV 324
L V+ASP+ ARKIPD G+FFEE+ H GAGG+WAELVSNRGFEAGGPNTPSNIDPWLI+
Sbjct: 116 LSVNASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 295
Query: 325 GDDSSVYVETDRSSCFSRNIVALRMEVLC 411
GD+SS+ V TDR+SCF RN VALRMEVLC
Sbjct: 296 GDESSIIVGTDRTSCFERNPVALRMEVLC 382
Score = 105 bits (224), Expect(3) = 3e-035
Identities = 51/88 (57%), Positives = 54/88 (61%)
Frame = -2 / -2
Query: 410 QRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPA 231
QRTSI AT R KHD S GS+ +GVLGPPAS PLLLTSSAH PPA
Sbjct: 381 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSILEGVLGPPASNPLLLTSSAHNPPA 202
Query: 230 PPWPISSKNTPRNVSGIFRASFGEASTL 147
P W ISSK P +SGIF A GEA TL
Sbjct: 201 PAWLISSKKIPNILSGIFLAFCGEAFTL 118
Score = 97.1 bits (206), Expect(2) = 2e-066
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +1 / +2
Query: 412 NDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
N CP+GGVG+YNPG+WGMNIE GK Y + ++++S T LTVSLTSSDGLQ LA+
Sbjct: 398 NACPSGGVGVYNPGYWGMNIEKGKVYKVSLHIRSSDTVSLTVSLTSSDGLQKLAA 562
Score = 46.8 bits (96), Expect(3) = 3e-035
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -2 / -2
Query: 482 FPSSMFMPQNPGL*MPTPPAGQSL 411
FP SMFMPQ PGL* PTPP GQ+L
Sbjct: 468 FPFSMFMPQ*PGL*TPTPPDGQAL 397
Score = 35.4 bits (71), Expect(3) = 3e-035
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 572 ARFCNPSELVSETVKHVVFGDL 507
A FC PSELV ETVK V DL
Sbjct: 558 ASFCRPSELVKETVKDTVSDDL 493
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 244 bits (527), Expect = 1e-063
Identities = 90/110 (81%), Positives = 104/110 (94%)
Frame = +1 / +1
Query: 154 DASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDD 333
+A+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPSNIDPW I+GDD
Sbjct: 202 EATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPSNIDPWSIIGDD 381
Query: 334 SSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDGK 483
SS+++ TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YNPGFWGMNIEDGK
Sbjct: 382 SSIFMATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYNPGFWGMNIEDGK 531
Score = 189 bits (407), Expect = 4e-047
Identities = 83/110 (75%), Positives = 84/110 (76%)
Frame = -2 / -2
Query: 482 FPSSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSM 303
FPSSMFMPQ PGL* PTPPAGQSLQRTSILRATMFRLKHD GSM
Sbjct: 530 FPSSMFMPQKPGL*TPTPPAGQSLQRTSILRATMFRLKHDVRSVAMNIEESSPMMDHGSM 351
Query: 302 FDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGIFRASFGEAS 153
FDGV GPPASKPLLLTSSAH+PPAP W ISSKN P NVSGIFRAS G AS
Sbjct: 350 FDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVAS 201
Score = 159 bits (343), Expect = 2e-038
Identities = 66/107 (61%), Positives = 75/107 (70%)
Frame = +3 / +3
Query: 162 AKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYSIEH*PLAHRWGRLLR 341
A AC +DP I W + *GD P R W MGR Q QRFRS RP YSI+H*P+ H W LL
Sbjct: 210 ATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYSIKH*PVVHHWR*LLY 389
Query: 342 LCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRRWK 482
+ GD*S++MFQ KH CS+DGGPL *L W CW LQP LGHEHRRW+
Sbjct: 390 IHGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQPRFLGHEHRRWE 530
Score = 152 bits (328), Expect = 3e-036
Identities = 67/110 (60%), Positives = 78/110 (70%)
Frame = -1 / -1
Query: 483 LSIFYVHAPESRVVNANTASRAVIAEDLHP*SNDVSTET*RTISLHIDGGVVPNDEPGVN 304
L IFYVHAP++ VVN NT S VI EDLHP SN+VS ET* TIS H GV+ ND P VN
Sbjct: 531 LPIFYVHAPKTWVVNTNTTSWTVITEDLHPQSNNVSAET*CTISRHEYRGVISNDGPRVN 352
Query: 303 VRWSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKECIGDLSSKLWRGI 154
V WS+ AS FETSV D+ CPY T + +LLK++PK C DL KLWRG+
Sbjct: 351 V*WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK*CFRDLPGKLWRGL 202
Score = 132 bits (284), Expect = 3e-030
Identities = 68/107 (63%), Positives = 72/107 (67%)
Frame = +2 / +2
Query: 158 PRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLTPGSSLGTTP 337
PR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT G SL TP
Sbjct: 206 PRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLTRGPSLEMTP 385
Query: 338 PSMWRLIVRHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*KM 478
WRLIV HVS ET LL*GWRSS MT +L VL FTT GA*T*KM
Sbjct: 386 LYSWRLIVHHVSAETLLL*GWRSSVMTVQLVVLVFTTQVFGA*T*KM 526
Score = 71.5 bits (150), Expect(2) = 1e-025
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -3 / -3
Query: 478 HLLCSCPRIQGCKCQHRQPGSHCRGPPSLEQRCFD*NMTND 356
HLLCSCP+ GCK QH Q SH RGPPS EQ+CF *NM D
Sbjct: 526 HLLCSCPKNLGCKHQHHQLDSHYRGPPSSEQQCFG*NMMYD 404
Score = 66.0 bits (138), Expect(2) = 1e-025
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = -3 / -3
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALA 161
GQC MEY GL LRNLC * LPI H+ L G SPQ+ Q M++GS QA+A
Sbjct: 358 GQCLMEYEGLQLRNLCY*QALPICHRPLHG*SPQKISQIMFQGSSGQAVA 209
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 211 bits (456), Expect = 8e-054
Identities = 83/106 (78%), Positives = 94/106 (88%)
Frame = +1 / +1
Query: 112 ASGLNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPN 291
AS L +TQ TL VDASP+LARKIPDT G+FFEE+ H GAGGIWAELVSNRGFEAGG +
Sbjct: 172 ASELEATQTATLTVDASPQLARKIPDTLFGIFFEEINHAGAGGIWAELVSNRGFEAGGLH 351
Query: 292 TPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAG 429
TPSNIDPW I+GDDSS+YVETDR+SCFSRNI+ALRMEVLC++CP G
Sbjct: 352 TPSNIDPWSIIGDDSSIYVETDRTSCFSRNIIALRMEVLCDNCPTG 489
Score = 153 bits (330), Expect(2) = 1e-038
Identities = 68/106 (64%), Positives = 72/106 (67%)
Frame = -2 / -2
Query: 428 PAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSS 249
P GQ QRTSILRA MFRLKHD GSMFDGV PPASKPLLLTSS
Sbjct: 488 PVGQLSQRTSILRAMMFRLKHDVRSVSTYIEESSPMMDHGSMFDGVWRPPASKPLLLTSS 309
Query: 248 AHIPPAPPWPISSKNTPRNVSGIFRASFGEASTLRVTIWVEFRPDA 111
AH+PPAP W ISSK P +VSGIFRAS GEAST+RV +WV DA
Sbjct: 308 AHMPPAPAWLISSKKIPNSVSGIFRASCGEASTVRVAVWVASNSDA 171
Score = 152 bits (328), Expect = 3e-036
Identities = 64/105 (60%), Positives = 75/105 (71%)
Frame = +3 / +3
Query: 114 VRSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQY 293
+R +PDG+P G CLA ACS+DP Y W +L*GD P RSWW MG T QRF S RP Y
Sbjct: 174 IRVGGHPDGDPHGRCLAAACSEDP*YTIWDLL*GDQPCRSWWHMG*TC**QRF*SWRPPY 353
Query: 294 SIEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGW 428
SI+H*P+ H W L +CGD*S +MFQSKH CS+DGGPL+*L W
Sbjct: 354 SIKH*PMVHHWR*LFYICGD*SDIMFQSKHHCSEDGGPLR*LSYW 488
Score = 136 bits (291), Expect = 4e-031
Identities = 65/102 (63%), Positives = 74/102 (72%)
Frame = -1 / -1
Query: 426 SRAVIAEDLHP*SNDVSTET*RTISLHIDGGVVPNDEPGVNVRWSIGASCFETSVADQFC 247
SR VIA+DLHP SNDVSTET* ISLHI V+ ND P VNV WS+ AS F+TSV ++F
Sbjct: 486 SRTVIAKDLHPQSNDVSTET*CPISLHIYRRVISNDGPWVNV*WSMEASSFKTSVTNKFS 307
Query: 246 PYPTSSSVAHLLKEHPKECIGDLSSKLWRGINLEGYHLG*IQ 121
PY TSS + LLKE PK CI DL SKL RGI+ EG LG +Q
Sbjct: 306 PYATSSCMVDLLKEDPK*CIRDLPSKLRRGIDREGRRLGGLQ 181
Score = 130 bits (278), Expect = 2e-029
Identities = 65/99 (65%), Positives = 69/99 (69%)
Frame = +2 / +2
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSR MPR+SLL RS IH LG SLRR +ELV YG N TEV K EA ILH+TLT
Sbjct: 191 PRRRPSRSMPRRSLLGRSLIHYLGSSLRRSTMQELVAYGLNLLVTEVLKLEASILHQTLT 370
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL*GWRSSAMTARL 427
G SL T MWRLI HVSVETSLL*GWRS A+T L
Sbjct: 371 HGPSLEMTLLYMWRLIGHHVSVETSLL*GWRSFAITVLL 487
Score = 92.1 bits (195), Expect(2) = 7e-023
Identities = 41/60 (68%), Positives = 45/60 (75%)
Frame = -3 / -3
Query: 310 GQCSMEYWGLLLRNLCC*PVLPISHQLLRGPSPQRTPQGMYRGSFEQALARHQP*GLPSG 131
GQC MEY GL L+NLC * V PI HQLL G SPQR Q +Y+GS EQA ARH+P*G PSG
Sbjct: 370 GQCLMEYGGLQLQNLCY*QVQPICHQLLHG*SPQRRSQIVYQGSSEQAAARHRP*GSPSG 191
Score = 35.8 bits (72), Expect(2) = 7e-023
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3 / -3
Query: 418 SHCRGPPSLEQRCFD*NMTND 356
S+ +GPPS EQ CFD*NM +D
Sbjct: 478 SYRKGPPSSEQ*CFD*NMMSD 416
Score = 26.7 bits (52), Expect(2) = 1e-038
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 31 WNPCASTCQ 5
W PCASTCQ
Sbjct: 103 WYPCASTCQ 77
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 124 bits (265), Expect(2) = 4e-051
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = +1 / +2
Query: 235 GGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLC 411
GG+WAELVSNRGFEAGG NTPSNIDPWLI+GD+S++ V TDRSSCF+ N +ALRMEVLC
Sbjct: 8 GGLWAELVSNRGFEAGGSNTPSNIDPWLIIGDESNIIVATDRSSCFASNPIALRMEVLC 184
Score = 98.5 bits (209), Expect(2) = 4e-051
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = +1 / +2
Query: 412 NDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
N CP+GGVGIYNPG+WGMNIE K Y + M+++S ++ LTVSLTSSDGLQNLAS
Sbjct: 200 NACPSGGVGIYNPGYWGMNIERTKVYRVTMHIRSSESVKLTVSLTSSDGLQNLAS 364
Score = 64.7 bits (135), Expect(2) = 2e-022
Identities = 32/55 (58%), Positives = 35/55 (63%)
Frame = -2 / -1
Query: 575 EARFCNPSELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSL 411
EARF PSELV ETV DL + F SMFMPQ PGL*+PTPP GQ+L
Sbjct: 363 EARF*RPSELVKETVSFTDSDDLMCMVTL*TFVLSMFMPQ*PGL*IPTPPDGQAL 199
Score = 61.5 bits (128), Expect(2) = 2e-022
Identities = 30/60 (50%), Positives = 33/60 (55%)
Frame = -2 / -1
Query: 410 QRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPA 231
Q TSI A K D + GSMF+GVL PPASKPLLLTSSAH PP+
Sbjct: 183 QSTSIRSAIGLLAKQDDRSVATIILDSSPMINHGSMFEGVLEPPASKPLLLTSSAHNPPS 4
>gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 616
Score = 158 bits (341), Expect(2) = 1e-045
Identities = 58/66 (87%), Positives = 64/66 (96%)
Frame = +1 / -3
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYN 447
GFEAGGP+TPSNIDPW I+GDDSS++V TDR+SCFSRNIVALRMEVLCNDCPAGGVG+YN
Sbjct: 584 GFEAGGPHTPSNIDPWSIIGDDSSIFVATDRTSCFSRNIVALRMEVLCNDCPAGGVGVYN 405
Query: 448 PGFWGM 465
PGFWGM
Sbjct: 404 PGFWGM 387
Score = 106 bits (227), Expect(2) = 8e-027
Identities = 43/66 (65%), Positives = 49/66 (74%)
Frame = +3 / -2
Query: 267 RFRSRRPQYSIEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQ 446
RFRS RP YSI+H*P+ H W LL + GD*S++MFQ KH CS+DGGPL *L W CW LQ
Sbjct: 585 RFRSWRPSYSIKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCSEDGGPL**LSSWWCWCLQ 406
Query: 447 PWILGH 464
P LGH
Sbjct: 405 PRFLGH 388
Score = 105 bits (224), Expect(2) = 4e-028
Identities = 46/66 (69%), Positives = 46/66 (69%)
Frame = -2 / +1
Query: 464 MPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLG 285
MPQ PGL* PTPPAGQSLQRTSILRATMFRLKHD GSMFDGV G
Sbjct: 388 MPQKPGL*TPTPPAGQSLQRTSILRATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*G 567
Query: 284 PPASKP 267
PPASKP
Sbjct: 568 PPASKP 585
Score = 47.3 bits (97), Expect(2) = 1e-045
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1 / -3
Query: 466 NIEDGKTYHLVMYVKSPKTTCLT 534
NIEDGK Y+LVMYVKSP+TT LT
Sbjct: 71 NIEDGKAYNLVMYVKSPETTDLT 3
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = -2 / +1
Query: 536 TVKHVVFGDLTYITR*YVFPSSMF 465
TVK VV GDLTYITR FPSSMF
Sbjct: 1 TVKSVVSGDLTYITRL*AFPSSMF 72
Score = 35.8 bits (72), Expect(2) = 8e-027
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3 / -2
Query: 465 EHRRWKDISSSYVC*VAKNHMLDS 536
EHRRW+ + S YVC*V+ N+ +S
Sbjct: 72 EHRRWEGLQSCYVC*VSGNNGFNS 1
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 180 bits (389), Expect = 1e-044
Identities = 69/91 (75%), Positives = 82/91 (90%)
Frame = +1 / +1
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 178 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 357
Query: 301 NIDPWLIVGDDSSVYVETDRSSCFSRNIVAL 393
NIDPW I+GDDSS++V TDR+SCFSRNIVAL
Sbjct: 358 NIDPWSIIGDDSSIFVATDRTSCFSRNIVAL 450
Score = 141 bits (302), Expect = 1e-032
Identities = 61/88 (69%), Positives = 63/88 (71%)
Frame = -2 / -2
Query: 392 RATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPPWPIS 213
RATMFRLKHD GSMFDGV GPPASKPLLLTSSAH+PPAP W IS
Sbjct: 449 RATMFRLKHDVRSVATNIEESSPMMDHGSMFDGV*GPPASKPLLLTSSAHMPPAPAWLIS 270
Query: 212 SKNTPRNVSGIFRASFGEASTLRVTIWV 129
SKN P NVSGIFRAS G ASTLRV +WV
Sbjct: 269 SKNIPNNVSGIFRASCGVASTLRVAVWV 186
Score = 126 bits (270), Expect = 3e-028
Identities = 54/92 (58%), Positives = 63/92 (68%)
Frame = +3 / +3
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 174 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 353
Query: 297 IEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCS 392
I+H*P+ H W LL + GD*S++MFQ KH CS
Sbjct: 354 IKH*PVVHHWR*LLYIRGD*SYIMFQPKHCCS 449
Score = 119 bits (255), Expect = 3e-026
Identities = 55/93 (59%), Positives = 64/93 (68%)
Frame = -1 / -1
Query: 390 SNDVSTET*RTISLHIDGGVVPNDEPGVNVRWSIGASCFETSVADQFCPYPTSSSVAHLL 211
SN+VS ET* TIS H GV+ ND P VNV WS+ AS FETSV D+ CPY T + +LL
Sbjct: 447 SNNVSAET*CTISRHEYRGVISNDGPRVNV*WSMRASSFETSVIDKLCPYATGPCMVNLL 268
Query: 210 KEHPKECIGDLSSKLWRGINLEGYHLG*IQT*R 112
K++PK C DL KLWRGINLEG LG + *R
Sbjct: 267 KKYPK*CFRDLPGKLWRGINLEGCCLGGLYF*R 169
Score = 105 bits (225), Expect = 5e-022
Identities = 54/87 (62%), Positives = 57/87 (65%)
Frame = +2 / +2
Query: 131 PRW*PSRLMPRQSLLERSPIHSLGCSLRRWATEELVGYGQNWSATEVSKQEAPILHRTLT 310
PR PSRLMPR SL RS H LG LRR + V YGQ+ S TEVSK EA ILH+TLT
Sbjct: 188 PRQQPSRLMPRHSLPGRSLKHYLGYFLRRLTMQGPVAYGQSLSITEVSKLEALILHQTLT 367
Query: 311 PGSSLGTTPPSMWRLIVRHVSVETSLL 391
G SL TP WRLIV HVS ET LL
Sbjct: 368 RGPSLEMTPLYSWRLIVHHVSAETLLL 448
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 152 bits (327), Expect(3) = 4e-044
Identities = 56/66 (84%), Positives = 63/66 (95%)
Frame = +1 / -3
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYN 447
GFEAGG +TPSNIDPW I+GDDSS+YVETDR+SCFSRNI+ALRMEVLC++CP GGVGIYN
Sbjct: 281 GFEAGGLHTPSNIDPWSIIGDDSSIYVETDRTSCFSRNIIALRMEVLCDNCPTGGVGIYN 102
Query: 448 PGFWGM 465
PGFWGM
Sbjct: 101 PGFWGM 84
Score = 108 bits (231), Expect(2) = 4e-025
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = +3 / -2
Query: 276 SRRPQYSIEH*PLAHRWGRLLRLCGD*SFVMFQSKHRCSKDGGPLQ*LPGWRCWHLQPWI 455
S RP YSI+H*P+ H W L +CGD*S +MFQSKH CS+DGGPL+*L W CW+LQP +
Sbjct: 273 SWRPPYSIKH*PMVHHWR*LFYICGD*SDIMFQSKHHCSEDGGPLR*LSYWWCWYLQPRV 94
Query: 456 LGH 464
LGH
Sbjct: 93 LGH 85
Score = 95.3 bits (202), Expect(2) = 1e-025
Identities = 42/72 (58%), Positives = 44/72 (61%)
Frame = -2 / +1
Query: 482 FPSSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSM 303
+ S MPQNPGL*+PTPP GQ QRTSILRA MFRLKHD GSM
Sbjct: 67 YDKSRTMPQNPGL*IPTPPVGQLSQRTSILRAMMFRLKHDVRSVSTYIEESSPMMDHGSM 246
Query: 302 FDGVLGPPASKP 267
FDGV PPAS P
Sbjct: 247 FDGVWRPPASNP 282
Score = 94.4 bits (200), Expect(2) = 1e-021
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = -1 / +3
Query: 465 HAPESRVVNANTASRAVIAEDLHP*SNDVSTET*RTISLHIDGGVVPNDEPGVNVRWSIG 286
HAPE VVN NT SR VIA+DLHP SNDVSTET* ISLHI V+ ND P VNV WS+
Sbjct: 84 HAPEPWVVNTNTTSRTVIAKDLHPQSNDVSTET*CPISLHIYRRVISNDGPWVNV*WSME 263
Query: 285 ASCFE 271
AS F+
Sbjct: 264 ASSFK 278
Score = 44.1 bits (90), Expect(3) = 4e-044
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -2
Query: 214 EMGHGGAGGIWAELVSNRGFEA 279
E+ H GAGGIWAELVSNRG A
Sbjct: 528 EINHAGAGGIWAELVSNRGDSA 463
Score = 43.6 bits (89), Expect(2) = 1e-025
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -2 / +2
Query: 278 ASKPLLLTSSAHIPPAPPWPIS 213
A PLLLTSSAH+PPAP W IS
Sbjct: 464 AESPLLLTSSAHMPPAPAWLIS 529
Score = 31.3 bits (62), Expect(2) = 1e-021
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 277 LRNLCC*PVLPISHQLLRGPSP 212
L +LC * V PI HQLL G SP
Sbjct: 465 LNHLCY*QVQPICHQLLHG*SP 530
Score = 28.5 bits (56), Expect(2) = 4e-025
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 213 GDGPRRSWWDMGRT 254
GD P RSWW MG T
Sbjct: 529 GDQPCRSWWHMG*T 488
Score = 23.5 bits (45), Expect(3) = 4e-044
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / -2
Query: 169 LARKIPDTFLGVFFE 213
L + PDT G+FFE
Sbjct: 708 LLGRSPDTLFGIFFE 664
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 141 bits (303), Expect(3) = 9e-042
Identities = 52/72 (72%), Positives = 63/72 (87%)
Frame = +1 / -3
Query: 250 ELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAG 429
+++ GFEAGGP TPSNIDPW I+GD+SS+YV T+ +SCF+RNIVALRMEVLC++C G
Sbjct: 14191 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRTG 14012
Query: 430 GVGIYNPGFWGM 465
GVGIYNPGFWGM
Sbjct: 14011 GVGIYNPGFWGM 13976
Score = 86.6 bits (183), Expect(3) = 2e-023
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -2 / +3
Query: 464 MPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLG 285
MPQNPGL*MPTPP Q QRTSILRAT+F +K + GSMF+GV G
Sbjct: 13977 MPQNPGL*MPTPPVRQLSQRTSILRATIFLVKQEAASVVTYMEDSSPMMFHGSMFEGV*G 14156
Query: 284 PPASKP 267
PPASKP
Sbjct: 14157 PPASKP 14174
Score = 44.5 bits (91), Expect(3) = 9e-042
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1 / -2
Query: 466 NIEDGKTYHLVMYVKSPKTTCLTVSLTSS 552
NIE+GKTY+LVMYV+S ++ LT SLT S
Sbjct: 13610 NIEEGKTYNLVMYVRSLESVELTASLTCS 13524
Score = 41.3 bits (84), Expect(3) = 9e-042
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -1
Query: 214 EMGHGGAGGIWAELVSNRG 270
E+ H GAGGIW ELVSNRG
Sbjct: 14712 EINHAGAGGIWEELVSNRG 14656
Score = 39.9 bits (81), Expect(3) = 2e-023
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -2 / +1
Query: 563 CNPSELVSETVKHVVFGDLTYITR*YVFPSSMF 465
C E VSE V DLTY+TR VFPSSMF
Sbjct: 13513 CESLEQVSEAVNSTDSSDLTYMTRL*VFPSSMF 13611
Score = 38.1 bits (77), Expect(3) = 2e-023
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / +2
Query: 269 PLLLTSSAHIPPAPPWPIS 213
PLLLTSS+ IPPAP W IS
Sbjct: 14657 PLLLTSSSQIPPAPAWLIS 14713
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 159 bits (342), Expect(2) = 8e-040
Identities = 60/84 (71%), Positives = 73/84 (86%)
Frame = +1 / +3
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 204 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 383
Query: 301 NIDPWLIVGDDSSVYVETDRSSCF 372
NIDPW I+GDDSS++V TDR+ F
Sbjct: 384 NIDPWSIIGDDSSIFVATDRTIMF 455
Score = 122 bits (261), Expect(2) = 3e-029
Identities = 51/61 (83%), Positives = 53/61 (86%)
Frame = -2 / -3
Query: 311 GSMFDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGIFRASFGEASTLRVTIW 132
GSMFDGV GPPASKPLLLTSSAH+PPAP W ISSKN P NVSGIFRAS G ASTLRV +W
Sbjct: 394 GSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVASTLRVAVW 215
Query: 131 V 129
V
Sbjct: 214 V 212
Score = 107 bits (229), Expect(2) = 6e-023
Identities = 47/82 (57%), Positives = 55/82 (67%)
Frame = +3 / +2
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 200 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 379
Query: 297 IEH*PLAHRWGRLLRLCGD*SF 362
I+H*P+ H W LL + GD*S+
Sbjct: 380 IKH*PVVHHWR*LLYIRGD*SY 445
Score = 107 bits (228), Expect = 2e-022
Identities = 48/83 (57%), Positives = 56/83 (67%)
Frame = -1 / -2
Query: 360 TISLHIDGGVVPNDEPGVNVRWSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKECIGD 181
TIS H GV+ ND P VNV WS+ AS FETSV D+ CPY T + +LLK++PK C D
Sbjct: 443 TISRHEYRGVISNDGPRVNV*WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK*CFRD 264
Query: 180 LSSKLWRGINLEGYHLG*IQT*R 112
L KLWRGINLEG LG + *R
Sbjct: 263 LPGKLWRGINLEGCCLGGLYF*R 195
Score = 27.1 bits (53), Expect(2) = 3e-029
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / -2
Query: 392 RATMFRLKHD 363
RATMFRLKHD
Sbjct: 476 RATMFRLKHD 447
Score = 25.8 bits (50), Expect(2) = 8e-040
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 364 SCFSRNIVAL 393
SCFSRNIVAL
Sbjct: 448 SCFSRNIVAL 477
Score = 21.6 bits (41), Expect(2) = 6e-023
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 363 VMFQSKHRCS 392
+MFQ KH CS
Sbjct: 447 IMFQPKHCCS 476
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 136 bits (293), Expect(2) = 2e-039
Identities = 51/69 (73%), Positives = 61/69 (88%)
Frame = +1 / +3
Query: 121 LNSTQMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPS 300
+ +TQ TLKVDA+P+LARKIP+T G+FFEE+ H GAGGIWAELV+NRGFEAGGP+TPS
Sbjct: 450 IEATQTATLKVDATPQLARKIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGPHTPS 629
Query: 301 NIDPWLIVG 327
NIDPW I+G
Sbjct: 630 NIDPWSIIG 656
Score = 122 bits (261), Expect(2) = 5e-029
Identities = 51/61 (83%), Positives = 53/61 (86%)
Frame = -2 / -3
Query: 311 GSMFDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGIFRASFGEASTLRVTIW 132
GSMFDGV GPPASKPLLLTSSAH+PPAP W ISSKN P NVSGIFRAS G ASTLRV +W
Sbjct: 640 GSMFDGV*GPPASKPLLLTSSAHMPPAPAWLISSKNIPNNVSGIFRASCGVASTLRVAVW 461
Query: 131 V 129
V
Sbjct: 460 V 458
Score = 99.9 bits (212), Expect(2) = 6e-022
Identities = 43/72 (59%), Positives = 50/72 (69%)
Frame = -1 / -2
Query: 327 PNDEPGVNVRWSIGASCFETSVADQFCPYPTSSSVAHLLKEHPKECIGDLSSKLWRGINL 148
PND P VNV WS+ AS FETSV D+ CPY T + +LLK++PK C DL KLWRGINL
Sbjct: 656 PNDGPRVNV*WSMRASSFETSVIDKLCPYATGPCMVNLLKKYPK*CFRDLPGKLWRGINL 477
Query: 147 EGYHLG*IQT*R 112
EG LG + *R
Sbjct: 476 EGCCLGGLYF*R 441
Score = 99.0 bits (210), Expect(2) = 1e-023
Identities = 41/70 (58%), Positives = 47/70 (67%)
Frame = +3 / +2
Query: 117 RSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GDGPRRSWWDMGRTGQQQRFRSRRPQYS 296
R+ +PD NPQG*C A AC +DP I W + *GD P R W MGR Q QRFRS RP YS
Sbjct: 446 RNRGHPDSNPQG*CHATACPEDP*NIIWDIF*GD*PCRGRWHMGRACQ*QRFRSWRPSYS 625
Query: 297 IEH*PLAHRW 326
I+H*P+ H W
Sbjct: 626 IKH*PVVHHW 655
Score = 46.8 bits (96), Expect(2) = 2e-039
Identities = 17/23 (73%), Positives = 22/23 (95%)
Frame = +1 / +1
Query: 322 VGDDSSVYVETDRSSCFSRNIVA 390
+GDDSS+++ TDR+SCFSRNIVA
Sbjct: 652 LGDDSSIFMATDRTSCFSRNIVA 720
Score = 31.3 bits (62), Expect(2) = 1e-023
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 333 LLRLCGD*SFVMFQSKHRC 389
LL + GD*S++MFQ KH C
Sbjct: 663 LLYIHGD*SYIMFQPKHCC 719
Score = 26.2 bits (51), Expect(2) = 5e-029
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1 / -1
Query: 390 SNDVSTET*RTISLHIDGGVV 328
SN+VS ET* TIS H GV+
Sbjct: 720 SNNVSAET*CTISRHEYRGVI 658
Score = 24.8 bits (48), Expect(2) = 6e-022
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 389 ATMFRLKHD 363
ATMFRLKHD
Sbjct: 719 ATMFRLKHD 693
>gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 679
Score = 85.2 bits (180), Expect(3) = 6e-038
Identities = 33/41 (80%), Positives = 34/41 (82%)
Frame = +3 / +1
Query: 96 QMSRRSVRSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GD 218
Q S+RSEFNPDGNPQG*CL KACSKDP YIPWGV *GD
Sbjct: 148 QQMSSSIRSEFNPDGNPQG*CLTKACSKDP*YIPWGVF*GD 270
Score = 84.8 bits (179), Expect(3) = 8e-036
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = -2 / -2
Query: 218 ISSKNTPRNVSGIFRASFGEASTLRVTIWVEFRPDA 111
I+SKNTPRN+SGIFRASFGEASTLRVTIWVEFRPDA
Sbjct: 270 ITSKNTPRNISGIFRASFGEASTLRVTIWVEFRPDA 163
Score = 79.8 bits (168), Expect(3) = 2e-034
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = -3 / -3
Query: 217 SPQRTPQGMYRGSFEQALARHQP*GLPSGLNSDLTLL 107
SPQ+TPQG+Y+GSFEQAL RHQP*GLPSGLNSDL LL
Sbjct: 269 SPQKTPQGIYQGSFEQALVRHQP*GLPSGLNSDLMLL 159
Score = 78.4 bits (165), Expect(3) = 3e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 112 ASGLNSTQMVTLKVDASPKLARKIPDTFLGVFFEEM 219
ASGLNSTQMVTLKVDASPKLARKIPD FLGVFFE M
Sbjct: 164 ASGLNSTQMVTLKVDASPKLARKIPDIFLGVFFEVM 271
Score = 70.1 bits (147), Expect(3) = 2e-024
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = -1 / -1
Query: 231 SSVAHLLKEHPKECIGDLSSKLWRGINLEGYHLG*IQT* 115
S H LK+HPKE I DLSSKLW GINLEGYHLG*IQT*
Sbjct: 283 SKKQHHLKKHPKEYIRDLSSKLW*GINLEGYHLG*IQT* 167
Score = 67.4 bits (141), Expect(3) = 9e-025
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2 / +3
Query: 110 ERQV*IQPRW*PSRLMPRQSLLERSPIHSLGCSLR 214
+ QV*IQPRW*PSRLMP QSLLERS I+SLGC LR
Sbjct: 162 QHQV*IQPRW*PSRLMPHQSLLERSLIYSLGCFLR 266
Score = 61.0 bits (127), Expect(3) = 6e-038
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +2 / +3
Query: 8 ASRSARVPIRWKDRPVPSSTSCSYFSA*PANV*EER 115
AS+SA VPI WKD PVP STSCS FSA*PANV*+ +
Sbjct: 63 ASQSAWVPIPWKDSPVPPSTSCS*FSA*PANV*QHQ 170
Score = 58.7 bits (122), Expect(3) = 2e-034
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -1 / -1
Query: 105 *TFAGYAEK*EQEVDEGTGRSFHRIGTRALRLA 7
*TFAGYAE *EQEVD GTG SFH IGT AL LA
Sbjct: 160 *TFAGYAEN*EQEVDGGTGESFHGIGTHAL*LA 62
Score = 58.7 bits (122), Expect(3) = 8e-036
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -3 / -3
Query: 112 LLLDICWLCREVXXXXXXXXXAVLPSNWNPCASTCQS 2
+LLDICWLCR++ VLP NWNPCA TC++
Sbjct: 167 MLLDICWLCRKLGARSGRRYGGVLPWNWNPCALTCEA 57
Score = 54.1 bits (112), Expect(3) = 3e-033
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +1 / +2
Query: 10 KSKRTGSNSMEGPPRTLIHXXXXXXCIASKCLGGA 114
KSKR GSNSMEG PRT +H CIASKCL +
Sbjct: 65 KSKRMGSNSMEGLPRTAVHFLLLIFCIASKCLAAS 169
Score = 50.5 bits (104), Expect(3) = 6e-038
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1 / +2
Query: 202 VFFEEMGHGGAGGIWAELVSNRG 270
V +EMG+GGAGGIWAELVSNRG
Sbjct: 371 VILQEMGNGGAGGIWAELVSNRG 439
Score = 48.2 bits (99), Expect(3) = 3e-033
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2 / +3
Query: 212 RRWATEELVGYGQNWSATEV 271
RRWATEELV YGQNWS TEV
Sbjct: 381 RRWATEELVEYGQNWSVTEV 440
Score = 45.9 bits (94), Expect(3) = 2e-034
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2 / -2
Query: 269 PLLLTSSAHIPPAPPWPISSKNT 201
PLLLTSSAHIPPAPP PIS T
Sbjct: 438 PLLLTSSAHIPPAPPLPISCSIT 370
Score = 45.9 bits (94), Expect(3) = 8e-036
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1 / -1
Query: 270 TSVADQFCPYPTSSSVAHLLK 208
TSV DQFCPY TSSSVAHLL+
Sbjct: 439 TSVTDQFCPYSTSSSVAHLLQ 377
Score = 45.0 bits (92), Expect(3) = 9e-025
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 213 GDGPRRSWWDMGRTGQQQR 269
GDG RRSWW+MGRTGQ QR
Sbjct: 382 GDGQRRSWWNMGRTGQ*QR 438
Score = 42.7 bits (87), Expect(3) = 2e-024
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / -2
Query: 104 RHLLAMQXXXXXXXXXXRGGPSIELEPVRFDL 9
RHLLAMQ RG PS+ELEP+RFDL
Sbjct: 159 RHLLAMQKIRSKKWTAVRGSPSMELEPMRFDL 64
Score = 39.5 bits (80), Expect(3) = 9e-025
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +3 / +1
Query: 9 QVEAHGFQFDGRTXXXXXXXXXXTSLHSQQMS 104
QV+AHGFQF GRT LHSQQMS
Sbjct: 64 QVKAHGFQFHGRTPPYRRPLLAPNFLHSQQMS 159
Score = 38.1 bits (77), Expect(3) = 2e-024
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / -3
Query: 268 LCC*PVLPISHQLLRGPSP 212
LC *PVLPI HQLLR PSP
Sbjct: 437 LCY*PVLPIFHQLLRCPSP 381
>gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 154 bits (331), Expect = 1e-036
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = +1 / +2
Query: 364 SCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSL 543
+CFSRNI+ALRMEVLC++CP GGVGIYNPGFWGMNIEDGK Y+LVMYVKSP+TT L VSL
Sbjct: 8 ACFSRNIIALRMEVLCDNCPTGGVGIYNPGFWGMNIEDGKAYNLVMYVKSPETTDLIVSL 187
Query: 544 TSSDGLQNLAS 576
TSSDGLQNLAS
Sbjct: 188 TSSDGLQNLAS 220
Score = 137 bits (295), Expect = 1e-031
Identities = 59/70 (84%), Positives = 61/70 (87%)
Frame = -2 / -2
Query: 575 EARFCNPSELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQRTSI 396
EARFCNPSELVSET+K VV GDLTYITR FPSSMFMPQNPGL*+PTPP GQ QRTSI
Sbjct: 219 EARFCNPSELVSETIKSVVSGDLTYITRL*AFPSSMFMPQNPGL*IPTPPVGQLSQRTSI 40
Query: 395 LRATMFRLKH 366
LRA MFRLKH
Sbjct: 39 LRAMMFRLKH 10
Score = 133 bits (285), Expect = 2e-030
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3 / +1
Query: 366 MFQSKHRCSKDGGPLQ*LPGWRCWHLQPWILGHEHRRWKDISSSYVC*VAKNHMLDSFAD 545
MFQSKH CS+DGGPL+*L W CW+LQP +LGHEHRRWK + S YVC*V +N+ LDSF +
Sbjct: 10 MFQSKHHCSEDGGPLR*LSYWWCWYLQPRVLGHEHRRWKGLQSCYVC*VTRNNRLDSFTN 189
Query: 546 KL*WVAESGF 575
KL*WVA+SGF
Sbjct: 190 KL*WVAKSGF 219
Score = 113 bits (242), Expect = 2e-024
Identities = 52/71 (73%), Positives = 56/71 (78%)
Frame = -1 / -1
Query: 579 T*SQILQPIRACQRNCQACGFWRLNIHN*MICLSIFYVHAPESRVVNANTASRAVIAEDL 400
+*SQILQPIRAC N Q FW LNIHN ++ LSIFYVHAPE VVN NT SR VIA+DL
Sbjct: 223 S*SQILQPIRAC**NYQVGCFW*LNIHNKIVGLSIFYVHAPEPWVVNTNTTSRTVIAKDL 44
Query: 399 HP*SNDVSTET 367
HP SNDVSTET
Sbjct: 43 HPQSNDVSTET 11
Score = 113 bits (241), Expect = 3e-024
Identities = 50/71 (70%), Positives = 52/71 (73%)
Frame = -3 / -3
Query: 577 LKPDSATHQSLSAKLSSMWFLAT*HT*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCRGPP 398
LKPD ATHQSL KLSS FL T*HT* D FHLLCSCPR GCK QH Q S+ +GPP
Sbjct: 221 LKPDFATHQSLLVKLSSRLFLVT*HT*QDCRPFHLLCSCPRTLGCKYQHHQ*DSYRKGPP 42
Query: 397 SLEQRCFD*NM 365
S EQ CFD*NM
Sbjct: 41 SSEQ*CFD*NM 9
Score = 112 bits (240), Expect = 4e-024
Identities = 54/73 (73%), Positives = 57/73 (78%)
Frame = +2 / +3
Query: 362 RHVSVETSLL*GWRSSAMTARLAVLAFTTLDSGA*T*KMERHII*LCMLSRQKPHA*QFR 541
RHVSVETSLL*GWRS A+T L VL FTT SGA*T*KMER I LCMLS QK * F
Sbjct: 6 RHVSVETSLL*GWRSFAITVLLVVLVFTTQGSGA*T*KMERPTILLCMLSHQKQPT**FH 185
Query: 542 *QALMGCRIWLQV 580
*QALMGC+IWLQ+
Sbjct: 186 *QALMGCKIWLQL 224
>gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_G04_A012 5', mRNA sequence
Length = 507
Score = 85.2 bits (180), Expect(3) = 2e-036
Identities = 33/41 (80%), Positives = 34/41 (82%)
Frame = +3 / +1
Query: 96 QMSRRSVRSEFNPDGNPQG*CLAKACSKDPRYIPWGVL*GD 218
Q S+RSEFNPDGNPQG*CL KACSKDP YIPWGV *GD
Sbjct: 220 QQMSSSIRSEFNPDGNPQG*CLTKACSKDP*YIPWGVF*GD 342
Score = 84.8 bits (179), Expect(3) = 7e-035
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = -2 / -1
Query: 218 ISSKNTPRNVSGIFRASFGEASTLRVTIWVEFRPDA 111
I+SKNTPRN+SGIFRASFGEASTLRVTIWVEFRPDA
Sbjct: 342 ITSKNTPRNISGIFRASFGEASTLRVTIWVEFRPDA 235
Score = 79.8 bits (168), Expect(3) = 4e-033
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = -3 / -2
Query: 217 SPQRTPQGMYRGSFEQALARHQP*GLPSGLNSDLTLL 107
SPQ+TPQG+Y+GSFEQAL RHQP*GLPSGLNSDL LL
Sbjct: 341 SPQKTPQGIYQGSFEQALVRHQP*GLPSGLNSDLMLL 231
Score = 78.4 bits (165), Expect(3) = 6e-032
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 112 ASGLNSTQMVTLKVDASPKLARKIPDTFLGVFFEEM 219
ASGLNSTQMVTLKVDASPKLARKIPD FLGVFFE M
Sbjct: 236 ASGLNSTQMVTLKVDASPKLARKIPDIFLGVFFEVM 343
Score = 70.1 bits (147), Expect(3) = 6e-024
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = -1 / -3
Query: 231 SSVAHLLKEHPKECIGDLSSKLWRGINLEGYHLG*IQT* 115
S H LK+HPKE I DLSSKLW GINLEGYHLG*IQT*
Sbjct: 355 SKKQHHLKKHPKEYIRDLSSKLW*GINLEGYHLG*IQT* 239
Score = 67.4 bits (141), Expect(3) = 4e-024
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2 / +3
Query: 110 ERQV*IQPRW*PSRLMPRQSLLERSPIHSLGCSLR 214
+ QV*IQPRW*PSRLMP QSLLERS I+SLGC LR
Sbjct: 234 QHQV*IQPRW*PSRLMPHQSLLERSLIYSLGCFLR 338
Score = 61.0 bits (127), Expect(3) = 2e-036
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +2 / +3
Query: 8 ASRSARVPIRWKDRPVPSSTSCSYFSA*PANV*EER 115
AS+SA VPI WKD PVP STSCS FSA*PANV*+ +
Sbjct: 135 ASQSAWVPIPWKDSPVPPSTSCS*FSA*PANV*QHQ 242
Score = 58.7 bits (122), Expect(3) = 4e-033
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -1 / -3
Query: 105 *TFAGYAEK*EQEVDEGTGRSFHRIGTRALRLA 7
*TFAGYAE *EQEVD GTG SFH IGT AL LA
Sbjct: 232 *TFAGYAEN*EQEVDGGTGESFHGIGTHAL*LA 134
Score = 58.7 bits (122), Expect(3) = 7e-035
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -3 / -2
Query: 112 LLLDICWLCREVXXXXXXXXXAVLPSNWNPCASTCQS 2
+LLDICWLCR++ VLP NWNPCA TC++
Sbjct: 239 MLLDICWLCRKLGARSGRRYGGVLPWNWNPCALTCEA 129
Score = 54.1 bits (112), Expect(3) = 6e-032
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +1 / +2
Query: 10 KSKRTGSNSMEGPPRTLIHXXXXXXCIASKCLGGA 114
KSKR GSNSMEG PRT +H CIASKCL +
Sbjct: 137 KSKRMGSNSMEGLPRTAVHFLLLIFCIASKCLAAS 241
Score = 45.4 bits (93), Expect(3) = 2e-036
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1 / +2
Query: 202 VFFEEMGHGGAGGIWAELVSN 264
V +EMG+GGAGGIWAELVSN
Sbjct: 443 VILQEMGNGGAGGIWAELVSN 505
Score = 44.1 bits (90), Expect(3) = 6e-032
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 212 RRWATEELVGYGQNWSAT 265
RRWATEELV YGQNWS T
Sbjct: 453 RRWATEELVEYGQNWSVT 506
Score = 42.7 bits (87), Expect(3) = 4e-024
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 213 GDGPRRSWWDMGRTGQQQ 266
GDG RRSWW+MGRTGQ Q
Sbjct: 454 GDGQRRSWWNMGRTGQ*Q 507
Score = 42.7 bits (87), Expect(3) = 6e-024
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / -1
Query: 104 RHLLAMQXXXXXXXXXXRGGPSIELEPVRFDL 9
RHLLAMQ RG PS+ELEP+RFDL
Sbjct: 231 RHLLAMQKIRSKKWTAVRGSPSMELEPMRFDL 136
Score = 42.7 bits (87), Expect(3) = 7e-035
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -2 / -1
Query: 266 LLLTSSAHIPPAPPWPISSKNT 201
LLLTSSAHIPPAPP PIS T
Sbjct: 507 LLLTSSAHIPPAPPLPISCSIT 442
Score = 41.8 bits (85), Expect(3) = 4e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1 / -3
Query: 264 VADQFCPYPTSSSVAHLLK 208
V DQFCPY TSSSVAHLL+
Sbjct: 505 VTDQFCPYSTSSSVAHLLQ 449
Score = 39.5 bits (80), Expect(3) = 4e-024
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +3 / +1
Query: 9 QVEAHGFQFDGRTXXXXXXXXXXTSLHSQQMS 104
QV+AHGFQF GRT LHSQQMS
Sbjct: 136 QVKAHGFQFHGRTPPYRRPLLAPNFLHSQQMS 231
Score = 36.3 bits (73), Expect(3) = 6e-024
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -3 / -2
Query: 265 CC*PVLPISHQLLRGPSP 212
C *PVLPI HQLLR PSP
Sbjct: 506 CY*PVLPIFHQLLRCPSP 453
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 109 bits (234), Expect(2) = 4e-033
Identities = 43/63 (68%), Positives = 48/63 (76%)
Frame = +1 / +3
Query: 133 QMVTLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDP 312
Q L VD S + A+ IP G+FFEE+ H GAGG+WAELVSNRGFEAGG NTPSNIDP
Sbjct: 384 QTAQLTVDVSSQNAQTIPGNMFGIFFEEINHAGAGGLWAELVSNRGFEAGGSNTPSNIDP 563
Query: 313 WLI 321
WLI
Sbjct: 564 WLI 572
Score = 52.8 bits (109), Expect(2) = 4e-033
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +1 / +1
Query: 325 GDDSSVYVETDRSSCFSRNIVALRMEVLC 411
GD+S++ V TDRSSCF+ N +ALRMEVLC
Sbjct: 577 GDESNIIVATDRSSCFASNPIALRMEVLC 663
>gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154749, DNA
sequence
Length = 731
Score = 141 bits (303), Expect = 9e-033
Identities = 52/72 (72%), Positives = 63/72 (87%)
Frame = +1 / +2
Query: 250 ELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAG 429
+++ GFEAGGP TPSNIDPW I+GD+SS+YV T+ +SCF+RNIVALRMEVLC++C G
Sbjct: 209 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRTG 388
Query: 430 GVGIYNPGFWGM 465
GVGIYNPGFWGM
Sbjct: 389 GVGIYNPGFWGM 424
>gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187778, DNA
sequence
Length = 654
Score = 141 bits (303), Expect = 9e-033
Identities = 52/72 (72%), Positives = 63/72 (87%)
Frame = +1 / +3
Query: 250 ELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAG 429
+++ GFEAGGP TPSNIDPW I+GD+SS+YV T+ +SCF+RNIVALRMEVLC++C G
Sbjct: 384 DIIYPLGFEAGGPYTPSNIDPWNIIGDESSIYVTTEAASCFTRNIVALRMEVLCDNCRTG 563
Query: 430 GVGIYNPGFWGM 465
GVGIYNPGFWGM
Sbjct: 564 GVGIYNPGFWGM 599
>gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 138 bits (297), Expect = 6e-032
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1 / +1
Query: 406 LCNDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
LCNDCPAGGVGIYNPGFWGMNIEDGK Y+LVMYVKSPK TCLTVSLTSSDGLQNLAS
Sbjct: 1 LCNDCPAGGVGIYNPGFWGMNIEDGKAYNLVMYVKSPKNTCLTVSLTSSDGLQNLAS 171
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = -2 / -3
Query: 575 EARFCNPSELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQ 408
EARFCNPSELVSETVKHV FGDLTYITR Y FPSSMFMPQNPGL*MPTPPAGQSLQ
Sbjct: 170 EARFCNPSELVSETVKHVFFGDLTYITRLYAFPSSMFMPQNPGL*MPTPPAGQSLQ 3
Score = 109 bits (232), Expect = 5e-023
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = +3 / +3
Query: 408 LQ*LPGWRCWHLQPWILGHEHRRWKDISSSYVC*VAKNHMLDSFADKL*WVAESGFR 578
LQ*LP CWHLQP ILGHEHRRW+ I SSYVC*VAK +MLDSF +KL WVA+SGFR
Sbjct: 3 LQ*LPSRWCWHLQPRILGHEHRRWEGIQSSYVC*VAKKYMLDSFTNKLRWVAKSGFR 173
Score = 108 bits (230), Expect = 9e-023
Identities = 48/67 (71%), Positives = 50/67 (74%)
Frame = -1 / -2
Query: 606 LESPATIMVT*SQILQPIRACQRNCQACGFWRLNIHN*MICLSIFYVHAPESRVVNANTA 427
L P V SQILQPI AC NCQAC FWRLNIHN*++CL IFYVHAPES VVNANT
Sbjct: 201 LRLPCNYYVNGSQILQPI*AC**NCQACIFWRLNIHN*IVCLPIFYVHAPESWVVNANTT 22
Query: 426 SRAVIAE 406
AVIAE
Sbjct: 21 GWAVIAE 1
Score = 107 bits (228), Expect = 2e-022
Identities = 44/56 (78%), Positives = 46/56 (82%)
Frame = -3 / -1
Query: 574 KPDSATHQSLSAKLSSMWFLAT*HT*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCR 407
KPD ATH SL KLSSM+FLAT*HT*LD M HLLCSCPRI GCKCQH + GSHCR
Sbjct: 169 KPDFATHLSLLVKLSSMYFLAT*HT*LDCMPSHLLCSCPRILGCKCQHHRLGSHCR 2
Score = 22.6 bits (43), Expect(2) = 6e-030
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / -2
Query: 607 LGIPCNYYGN 578
L +PCNYY N
Sbjct: 201 LRLPCNYYVN 172
>gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 138 bits (297), Expect = 6e-032
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1 / +1
Query: 406 LCNDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
LCNDCPAGGVGIYNPGFWGMNIEDGK Y+LVMYVKSPK TCLTVSLTSSDGLQNLAS
Sbjct: 1 LCNDCPAGGVGIYNPGFWGMNIEDGKAYNLVMYVKSPKNTCLTVSLTSSDGLQNLAS 171
Score = 129 bits (276), Expect(2) = 5e-030
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = -2 / -3
Query: 575 EARFCNPSELVSETVKHVVFGDLTYITR*YVFPSSMFMPQNPGL*MPTPPAGQSLQ 408
EARFCNPSELVSETVKHV FGDLTYITR Y FPSSMFMPQNPGL*MPTPPAGQSLQ
Sbjct: 170 EARFCNPSELVSETVKHVFFGDLTYITRLYAFPSSMFMPQNPGL*MPTPPAGQSLQ 3
Score = 109 bits (232), Expect = 5e-023
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = +3 / +3
Query: 408 LQ*LPGWRCWHLQPWILGHEHRRWKDISSSYVC*VAKNHMLDSFADKL*WVAESGFR 578
LQ*LP CWHLQP ILGHEHRRW+ I SSYVC*VAK +MLDSF +KL WVA+SGFR
Sbjct: 3 LQ*LPSRWCWHLQPRILGHEHRRWEGIQSSYVC*VAKKYMLDSFTNKLRWVAKSGFR 173
Score = 108 bits (230), Expect = 9e-023
Identities = 48/67 (71%), Positives = 50/67 (74%)
Frame = -1 / -2
Query: 606 LESPATIMVT*SQILQPIRACQRNCQACGFWRLNIHN*MICLSIFYVHAPESRVVNANTA 427
L P V SQILQPI AC NCQAC FWRLNIHN*++CL IFYVHAPES VVNANT
Sbjct: 201 LRLPCNYYVNGSQILQPI*AC**NCQACIFWRLNIHN*IVCLPIFYVHAPESWVVNANTT 22
Query: 426 SRAVIAE 406
AVIAE
Sbjct: 21 GWAVIAE 1
Score = 107 bits (228), Expect = 2e-022
Identities = 44/56 (78%), Positives = 46/56 (82%)
Frame = -3 / -1
Query: 574 KPDSATHQSLSAKLSSMWFLAT*HT*LDDMSFHLLCSCPRIQGCKCQHRQPGSHCR 407
KPD ATH SL KLSSM+FLAT*HT*LD M HLLCSCPRI GCKCQH + GSHCR
Sbjct: 169 KPDFATHLSLLVKLSSMYFLAT*HT*LDCMPSHLLCSCPRILGCKCQHHRLGSHCR 2
Score = 22.6 bits (43), Expect(2) = 5e-030
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / -2
Query: 607 LGIPCNYYGN 578
L +PCNYY N
Sbjct: 201 LRLPCNYYVN 172
>gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_E04_A002 5', mRNA sequence
Length = 266
Score = 121 bits (260), Expect = 8e-027
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = +1 / +1
Query: 247 AELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPA 426
A L NRGFEAGG +TPSNIDPW I+GDDSS+YVETDR+SCFS NI+ALRMEVLC++CP
Sbjct: 82 AALDRNRGFEAGGLHTPSNIDPWSIIGDDSSIYVETDRTSCFSPNIIALRMEVLCDNCPT 261
Query: 427 G 429
G
Sbjct: 262 G 264
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 63.3 bits (132), Expect(3) = 2e-022
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +1 / -1
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSV 342
GFEAGGPNTPSNIDPWLI+GD+SS+
Sbjct: 77 GFEAGGPNTPSNIDPWLIIGDESSI 3
Score = 44.1 bits (90), Expect(3) = 2e-022
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1 / -1
Query: 214 EMGHGGAGGIWAELVSNRGFE 276
E+ H GAGG+WAELVSNRG E
Sbjct: 242 EINHAGAGGLWAELVSNRGSE 180
Score = 38.6 bits (78), Expect(3) = 2e-022
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1 / -2
Query: 145 LKVDASPKLARKIPDTFLGVFFE 213
L V+ASP+ ARKIPD G+FFE
Sbjct: 475 LSVNASPQNARKIPDKMFGIFFE 407
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.317 0.136 0.423
Matrix: BLOSUM62
Number of Hits to DB: 874,372,658
Number of Sequences: 832831
Number of extensions: 14010206
Number of successful extensions: 157817
Number of sequences better than 1.0e-020: 27
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 18318138425
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)