TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX609976.1|CX609976 ANR1_15_H06.g1_A002 Anaerobic roots ... 190 2e-073
gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots ... 183 3e-045
gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves... 163 3e-039
gb|CD427426.1|CD427426 SA1_30_H03.g1_A002 Salicylic acid-tr... 111 1e-034
gb|AW922618.1|AW922618 DG1_46_C02.b1_A002 Dark Grown 1 (DG1... 111 1e-034
gb|CF480460.1|CF480460 POL1_65_H09.g1_A002 Pollen Sorghum b... 108 8e-034
gb|CF481222.1|CF481222 POL1_70_E04.g1_A002 Pollen Sorghum b... 107 2e-033
gb|CW226021.1|CW226021 104_663_11204668_116_37214_002 Sorgh... 107 2e-031
gb|CW313609.1|CW313609 104_803_11471374_148_35791_081 Sorgh... 107 2e-031
gb|CW303280.1|CW303280 104_787_11465156_116_35675_068 Sorgh... 107 4e-031
gb|CW492422.1|CW492422 fsbb001f282l05f0 Sorghum methylation... 107 1e-030
gb|CW184184.1|CW184184 104_600_11165019_116_36685_010 Sorgh... 107 6e-030
gb|CN149106.1|CN149106 WOUND1_60_F07.g1_A002 Wounded leaves... 103 1e-028
gb|CW309305.1|CW309305 104_798_11469125_116_36239_029 Sorgh... 79 1e-028
gb|CN148636.1|CN148636 WOUND1_57_G10.g1_A002 Wounded leaves... 101 4e-028
gb|CN142104.1|CN142104 WOUND1_3_H04.g1_A002 Wounded leaves ... 101 6e-028
gb|CF430327.1|CF430327 PH1_27_B12.g1_A002 Phosphorous-defic... 101 6e-028
gb|CN137957.1|CN137957 OX1_60_G12.g1_A002 Oxidatively-stres... 100 2e-027
gb|CN129625.1|CN129625 RHOH1_36_A11.g1_A002 Acid- and alkal... 98 5e-027
gb|CX613679.1|CX613679 GABR1_9_C08.g1_A002 GA- or brassinol... 96 2e-026
gb|CN152208.1|CN152208 WOUND1_80_C01.g1_A002 Wounded leaves... 104 1e-025
gb|CX617402.1|CX617402 GABR1_33_C02.g1_A002 GA- or brassino... 91 8e-025
gb|CN131232.1|CN131232 RHOH1_46_E06.g1_A002 Acid- and alkal... 89 3e-024
gb|CL166445.1|CL166445 104_362_10809380_114_31798_212 Sorgh... 82 7e-023
>gb|CX609976.1|CX609976 ANR1_15_H06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H06_A002 5', mRNA sequence
Length = 677
Score = 190 bits (409), Expect(2) = 2e-073
Identities = 82/113 (72%), Positives = 85/113 (75%)
Frame = +1 / +3
Query: 313 AGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXS 492
A RLNASF ELFIRESEAVQSKAGRYQSLQEIPFFAYRVP LAPPY+FT DLYPAA
Sbjct: 327 AAHRLNASFAELFIRESEAVQSKAGRYQSLQEIPFFAYRVPFTLAPPYDFTRDLYPAAAL 506
Query: 493 VNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
+NVNDAIWSMYF+ELLP L K GDDGNYAV S NY YVA
Sbjct: 507 LNVNDAIWSMYFNELLPLLAKNGDDGNYAVTVDANLACLQVLSRRINYGRYVA 665
Score = 177 bits (380), Expect(3) = 1e-071
Identities = 77/103 (74%), Positives = 83/103 (80%)
Frame = -3 / -1
Query: 651 CYVXXVVXXX*XXXKXXKICIXSYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQ 472
C+V +V * K KICI SYG+VAII L REQL+EVHAPYGV+NV * GSGIQ
Sbjct: 665 CHVPTIVDPS*KHLKTRKICINSYGIVAIITVLGQQREQLIEVHAPYGVINVK*CGSGIQ 486
Query: 471 IACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 343
I+CEVVWR QS RNSVSEEWNLL*ALVPSGLGLNGLGLADEEL
Sbjct: 485 ISCEVVWRCQSERNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 357
Score = 149 bits (321), Expect(3) = 1e-060
Identities = 70/95 (73%), Positives = 75/95 (78%)
Frame = +3 / +2
Query: 351 HPRVRGRSVQGRKVPKPTGDSILRLQSSFCSGASIQLHKRSVSRCXXSQR*RRHMEHVLR 530
HPRVRGRSVQGRKVPKPTGDSILRLQSSF SG SI+LHKRSVSRC + R* RHMEHVL+
Sbjct: 365 HPRVRGRSVQGRKVPKPTGDSILRLQSSFHSGTSIRLHKRSVSRCRIT*R**RHMEHVLQ 544
Query: 531 RAAPSAX*XWR*WQLRRSX*CRSCXSSXXFXXXQL 635
AAPSA *WQL R+ *C+SC SS F QL
Sbjct: 545 *AAPSAGQER**WQLCRNC*CKSCVSSGAFKKDQL 649
Score = 144 bits (308), Expect(2) = 1e-046
Identities = 64/92 (69%), Positives = 65/92 (70%)
Frame = -2 / -3
Query: 646 RXXRS*XXXXXXEXXQDLHQXLRRSCHHRHX*XAEGAARRSTCSIWRR*R*LXXQRDTDR 467
R S* E QDLHQ LR SCHH AEGAA STCSIWR *R*+ QRDTD
Sbjct: 660 RTYHS*SFLKAPEDTQDLHQQLRHSCHHHRSWPAEGAAH*STCSIWRH*R*VMRQRDTDL 481
Query: 466 L*SCMEAPEQKELCKRRMESPVGFGTFRPWTE 371
L*S ME PE KELCKRRMESPVGFGTFRPWTE
Sbjct: 480 L*SRMEVPE*KELCKRRMESPVGFGTFRPWTE 385
Score = 143 bits (306), Expect(2) = 3e-035
Identities = 62/69 (89%), Positives = 64/69 (92%)
Frame = -1 / -2
Query: 527 KYMLHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*TASDSRMK 348
KYMLHMASLTL+ AAGYRSLVK YGGAR +GTL*AKNGISCRLWYLPALD*TASDSRMK
Sbjct: 541 KYMLHMASLTLSNAAAGYRSLVKSYGGARVKGTL*AKNGISCRLWYLPALD*TASDSRMK 362
Query: 347 SSTKEALRR 321
SS KEALRR
Sbjct: 361 SSAKEALRR 335
Score = 111 bits (237), Expect(3) = 8e-028
Identities = 45/53 (84%), Positives = 45/53 (84%)
Frame = +2 / +1
Query: 386 EGTKAYRRFHSSLTEFLLLWRLHTTSQAICIPLPXQSTLTTPYGACTSTSCSL 544
EGTKAYRRFHSSLTEFL LW LHTTSQ ICIPLP TL TPYGACTS SCSL
Sbjct: 400 EGTKAYRRFHSSLTEFLSLWHLHTTSQEICIPLPHYLTLMTPYGACTSMSCSL 558
Score = 107 bits (229), Expect(2) = 2e-073
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / +3
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 141 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 320
Query: 313 AG 318
G
Sbjct: 321 DG 326
Score = 105 bits (224), Expect(3) = 1e-071
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / -2
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 325 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 173
Score = 88.6 bits (187), Expect(3) = 1e-060
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / +2
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 173 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 280
Score = 64.3 bits (134), Expect(2) = 1e-046
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3 / -1
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAE 193
LGPLDEAEHNGVLLPRQEVPHRV+AE
Sbjct: 278 LGPLDEAEHNGVLLPRQEVPHRVEAE 201
Score = 35.4 bits (71), Expect(3) = 1e-060
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1 / +3
Query: 88 KTTETAMAVRAIHTPLLLCTMVVVL 162
+ T TAMAVRAIHTP LL V +L
Sbjct: 87 RKTATAMAVRAIHTPPLLLCTVALL 161
Score = 29.0 bits (57), Expect(3) = 8e-028
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3 / +2
Query: 93 NRDSNGRARHPYAAPPVHHGGGADRPRVP 179
N +SNG ARH +AA H G A R P
Sbjct: 92 NSNSNGGARHSHAAAAPLHRGVAAADRRP 178
Score = 28.1 bits (55), Expect(3) = 1e-071
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 161 STTTMVHRRSGVWMARTAIAVSVVL 87
S T+ GV MARTAIAV+V L
Sbjct: 160 SNATVQRSSGGV*MARTAIAVAVFL 86
Score = 27.2 bits (53), Expect(2) = 3e-035
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / -3
Query: 271 TWPSR*G*TQW 239
TW SR*G*TQW
Sbjct: 279 TWSSR*G*TQW 247
Score = 25.4 bits (49), Expect(3) = 8e-028
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / +1
Query: 167 ASCPRPPPGSA 199
ASC RPPP SA
Sbjct: 175 ASCRRPPPSSA 207
>gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H06_A002 3', mRNA sequence
Length = 719
Score = 183 bits (394), Expect = 3e-045
Identities = 81/120 (67%), Positives = 83/120 (69%)
Frame = +1 / +1
Query: 337 FVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAIW 516
F ELFIRESEAVQSKAGRYQSLQEIPFFAYRVP LAPPYNFT DLYPAA +NVNDAIW
Sbjct: 1 FAELFIRESEAVQSKAGRYQSLQEIPFFAYRVPFTLAPPYNFTRDLYPAAALLNVNDAIW 180
Query: 517 SMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVAXXXXXXXXXXXTSLI 696
SMYF+ELLP L K GDDGNYAV S NY YVA TSLI
Sbjct: 181 SMYFNELLPLLAKNGDDGNYAVTVDADLACLQVLSRRINYGRYVAEVKFRGDQQTYTSLI 360
Score = 177 bits (382), Expect = 1e-043
Identities = 80/118 (67%), Positives = 87/118 (73%)
Frame = -3 / -3
Query: 696 D*AGXXXXXXXXXXXCYVXXVVXXX*XXXKXXKICIXSYGVVAIIAXLXXPREQLVEVHA 517
+*AG C+V +V * K KICI SYG+VAII L REQL+EVHA
Sbjct: 360 N*AGIGLLVSSELHFCHVPTIVDPS*KHLKTCKICINSYGIVAIITVLGQQREQLIEVHA 181
Query: 516 PYGVVNVD*XGSGIQIACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 343
PYGV+NV * GSGIQI+CEVVWR QS RNSVSEEWNLL*ALVPSGLGLNGLGLADEEL
Sbjct: 180 PYGVINVK*CGSGIQISCEVVWRCQSERNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 7
Score = 161 bits (346), Expect = 1e-038
Identities = 79/115 (68%), Positives = 82/115 (71%)
Frame = +3 / +3
Query: 351 HPRVRGRSVQGRKVPKPTGDSILRLQSSFCSGASIQLHKRSVSRCXXSQR*RRHMEHVLR 530
HPRVRGRSVQGRKVPKPTGDSILRLQSSF SG SIQLHKRSVSRC + R* RHMEHVL+
Sbjct: 15 HPRVRGRSVQGRKVPKPTGDSILRLQSSFHSGTSIQLHKRSVSRCRIT*R**RHMEHVLQ 194
Query: 531 RAAPSAX*XWR*WQLRRSX*CRSCXSSXXFXXXQLRXXRSXXXVXXXXAXXYQLN 695
AAPSA *WQL R+ *CRSC SS F QL R V A YQLN
Sbjct: 195 *AAPSAGQER**WQLCRNC*CRSCMSSGAFKKDQLW*VRGRSEVQRRPADLYQLN 359
Score = 159 bits (341), Expect = 6e-038
Identities = 71/108 (65%), Positives = 72/108 (66%)
Frame = -2 / -2
Query: 694 LSWYXXAXXXXTXXXLRXXRS*XXXXXXEXXQDLHQXLRRSCHHRHX*XAEGAARRSTCS 515
LSWY A T R S* E QDLHQ LR SCHH AEGAA STCS
Sbjct: 358 LSWYRSAGLL*TSLLPRTYHS*SFLKAPEDMQDLHQQLRHSCHHHRSWPAEGAAH*STCS 179
Query: 514 IWRR*R*LXXQRDTDRL*SCMEAPEQKELCKRRMESPVGFGTFRPWTE 371
IWR *R*+ QRDTD L*SCME PE KELCKRRMESPVGFGTFRPWTE
Sbjct: 178 IWRH*R*VMRQRDTDLL*SCMEVPE*KELCKRRMESPVGFGTFRPWTE 35
Score = 133 bits (284), Expect = 4e-030
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = -1 / -1
Query: 527 KYMLHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*TASDSRMK 348
KYMLHMASLTL+ AAGYRSLVKLYGGAR +GTL*AKNGISCRLWYLPALD*TASDSRMK
Sbjct: 191 KYMLHMASLTLSNAAAGYRSLVKLYGGARVKGTL*AKNGISCRLWYLPALD*TASDSRMK 12
Query: 347 SS 342
SS
Sbjct: 11 SS 6
Score = 111 bits (237), Expect = 1e-023
Identities = 45/53 (84%), Positives = 45/53 (84%)
Frame = +2 / +2
Query: 386 EGTKAYRRFHSSLTEFLLLWRLHTTSQAICIPLPXQSTLTTPYGACTSTSCSL 544
EGTKAYRRFHSSLTEFL LW LHTTSQ ICIPLP TL TPYGACTS SCSL
Sbjct: 50 EGTKAYRRFHSSLTEFLSLWHLHTTSQEICIPLPHYLTLMTPYGACTSMSCSL 208
>gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C01_A002 3', mRNA sequence
Length = 694
Score = 163 bits (350), Expect = 3e-039
Identities = 72/110 (65%), Positives = 74/110 (67%)
Frame = +1 / +1
Query: 367 AVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAIWSMYFDELLPR 546
AVQSKAGRYQSLQEIPFFAYRVP LAPPYNFT DLYPAA +NVNDAIWSMYF+ELLP
Sbjct: 1 AVQSKAGRYQSLQEIPFFAYRVPFTLAPPYNFTRDLYPAAALLNVNDAIWSMYFNELLPL 180
Query: 547 LXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVAXXXXXXXXXXXTSLI 696
L K GDDGNYAV S NY YVA TSLI
Sbjct: 181 LAKNGDDGNYAVTVDADLACLQVLSRRINYGRYVAEVKFRGDQQTYTSLI 330
Score = 160 bits (344), Expect = 2e-038
Identities = 72/110 (65%), Positives = 79/110 (71%)
Frame = -3 / -2
Query: 696 D*AGXXXXXXXXXXXCYVXXVVXXX*XXXKXXKICIXSYGVVAIIAXLXXPREQLVEVHA 517
+*AG C+V +V * K KICI SYG+VAII L REQL+EVHA
Sbjct: 330 N*AGIGLLVSSELHFCHVPTIVDPS*KHLKTCKICINSYGIVAIITVLGQQREQLIEVHA 151
Query: 516 PYGVVNVD*XGSGIQIACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNG 367
PYGV+NV * GSGIQI+CEVVWR QS RNSVSEEWNLL*ALVPSGLGLNG
Sbjct: 150 PYGVINVK*CGSGIQISCEVVWRCQSERNSVSEEWNLL*ALVPSGLGLNG 1
Score = 159 bits (341), Expect = 6e-038
Identities = 71/108 (65%), Positives = 72/108 (66%)
Frame = -2 / -1
Query: 694 LSWYXXAXXXXTXXXLRXXRS*XXXXXXEXXQDLHQXLRRSCHHRHX*XAEGAARRSTCS 515
LSWY A T R S* E QDLHQ LR SCHH AEGAA STCS
Sbjct: 328 LSWYRSAGLL*TSLLPRTYHS*SFLKAPEDMQDLHQQLRHSCHHHRSWPAEGAAH*STCS 149
Query: 514 IWRR*R*LXXQRDTDRL*SCMEAPEQKELCKRRMESPVGFGTFRPWTE 371
IWR *R*+ QRDTD L*SCME PE KELCKRRMESPVGFGTFRPWTE
Sbjct: 148 IWRH*R*VMRQRDTDLL*SCMEVPE*KELCKRRMESPVGFGTFRPWTE 5
Score = 145 bits (311), Expect = 8e-034
Identities = 73/109 (66%), Positives = 76/109 (69%)
Frame = +3 / +3
Query: 369 RSVQGRKVPKPTGDSILRLQSSFCSGASIQLHKRSVSRCXXSQR*RRHMEHVLRRAAPSA 548
RSVQGRKVPKPTGDSILRLQSSF SG SIQLHKRSVSRC + R* RHMEHVL+ AAPSA
Sbjct: 3 RSVQGRKVPKPTGDSILRLQSSFHSGTSIQLHKRSVSRCRIT*R**RHMEHVLQ*AAPSA 182
Query: 549 X*XWR*WQLRRSX*CRSCXSSXXFXXXQLRXXRSXXXVXXXXAXXYQLN 695
*WQL R+ *CRSC SS F QL R V A YQLN
Sbjct: 183 GQER**WQLCRNC*CRSCMSSGAFKKDQLW*VRGRSEVQRRPADLYQLN 329
Score = 114 bits (243), Expect = 2e-024
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = -1 / -3
Query: 527 KYMLHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*T 369
KYMLHMASLTL+ AAGYRSLVKLYGGAR +GTL*AKNGISCRLWYLPALD*T
Sbjct: 161 KYMLHMASLTLSNAAAGYRSLVKLYGGARVKGTL*AKNGISCRLWYLPALD*T 3
Score = 111 bits (237), Expect = 1e-023
Identities = 45/53 (84%), Positives = 45/53 (84%)
Frame = +2 / +2
Query: 386 EGTKAYRRFHSSLTEFLLLWRLHTTSQAICIPLPXQSTLTTPYGACTSTSCSL 544
EGTKAYRRFHSSLTEFL LW LHTTSQ ICIPLP TL TPYGACTS SCSL
Sbjct: 20 EGTKAYRRFHSSLTEFLSLWHLHTTSQEICIPLPHYLTLMTPYGACTSMSCSL 178
>gb|CD427426.1|CD427426 SA1_30_H03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_30_H03_A002 5', mRNA sequence
Length = 810
Score = 111 bits (237), Expect(2) = 1e-034
Identities = 52/114 (45%), Positives = 62/114 (54%)
Frame = +1 / +2
Query: 310 AAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAX 489
AAG S VE F+RE+EA+ +KAG YQ +++PFF +PS L P L+P A
Sbjct: 143 AAGGGGGYSLVEFFVREAEALNAKAGHYQKPEDVPFFPQDLPSPLFPTKPSPKALHPFAL 322
Query: 490 SVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
V VNDAIW MYFDELLP GDDGNYA S + YVA
Sbjct: 323 LVTVNDAIWKMYFDELLPLFTVDGDDGNYAQTVALDFACLQVLSQRIHIGKYVA 484
Score = 56.5 bits (117), Expect(2) = 1e-034
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAG 318
LSL VRD L R ED++VF+LIERA++P N PAY P G
Sbjct: 35 LSLAAVRDALVRLEDSVVFALIERARHPRNAPAYAPAAGGGG 160
>gb|AW922618.1|AW922618 DG1_46_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 111 bits (237), Expect(2) = 1e-034
Identities = 52/114 (45%), Positives = 62/114 (54%)
Frame = +1 / +2
Query: 310 AAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAX 489
AAG S VE F+RE+EA+ +KAG YQ +++PFF +PS L P L+P A
Sbjct: 161 AAGGGGGYSLVEFFVREAEALNAKAGHYQKPEDVPFFPQDLPSPLFPTKPSPKALHPFAL 340
Query: 490 SVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
V VNDAIW MYFDELLP GDDGNYA S + YVA
Sbjct: 341 LVTVNDAIWKMYFDELLPLFTVDGDDGNYAQTVALDFACLQVLSQRIHIGKYVA 502
Score = 56.5 bits (117), Expect(2) = 1e-034
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAG 318
LSL VRD L R ED++VF+LIERA++P N PAY P G
Sbjct: 53 LSLAAVRDALVRLEDSVVFALIERARHPRNAPAYAPAAGGGG 178
>gb|CF480460.1|CF480460 POL1_65_H09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H09_A002 5', mRNA sequence
Length = 761
Score = 108 bits (231), Expect(2) = 8e-034
Identities = 51/114 (44%), Positives = 61/114 (53%)
Frame = +1 / +1
Query: 310 AAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAX 489
AAG S E F+RE++A+ SKAG YQ +++PFF +PS L P L+P A
Sbjct: 190 AAGGGGGYSLEEFFVREAQALNSKAGHYQKPEDVPFFPQDLPSPLFPTKPSPKALHPFAL 369
Query: 490 SVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
V VNDAIW MYFDELLP GDDGNYA S + YVA
Sbjct: 370 LVTVNDAIWKMYFDELLPLFTVDGDDGNYAQTVALDFACLQVLSQRIHIGKYVA 531
Score = 56.5 bits (117), Expect(2) = 8e-034
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAG 318
LSL VRD L R ED++VF+LIERA++P N PAY P G
Sbjct: 82 LSLAAVRDALVRLEDSVVFALIERARHPRNAPAYAPAAGGGG 207
>gb|CF481222.1|CF481222 POL1_70_E04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_E04_A002 5', mRNA sequence
Length = 683
Score = 107 bits (228), Expect(2) = 2e-033
Identities = 51/114 (44%), Positives = 61/114 (53%)
Frame = +1 / +1
Query: 310 AAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAX 489
AAG S VE F+RE+EA+ +KAG YQ +++PFF +PS L P L+P A
Sbjct: 151 AAGGGGGYSLVEFFVREAEALNAKAGHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFAL 330
Query: 490 SVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
V VNDAIW MYFDEL P GDDGNYA S + YVA
Sbjct: 331 LVTVNDAIWKMYFDELPPLFTVDGDDGNYAQTVALDFACLQVPSQRIHIGKYVA 492
Score = 56.5 bits (117), Expect(2) = 2e-033
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAG 318
LSL VRD L R ED++VF+LIERA++P N PAY P G
Sbjct: 43 LSLAAVRDALVRLEDSVVFALIERARHPRNAPAYAPAAGGGG 168
>gb|CW226021.1|CW226021 104_663_11204668_116_37214_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204668, DNA
sequence
Length = 654
Score = 107 bits (229), Expect(2) = 3e-030
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / -3
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 268 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 89
Query: 313 AG 318
G
Sbjct: 88 DG 83
Score = 105 bits (224), Expect(3) = 2e-031
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / +3
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 84 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 236
Score = 88.6 bits (187), Expect(3) = 2e-025
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / -2
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 236 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 129
Score = 45.5 bits (93), Expect(2) = 3e-030
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1 / -3
Query: 313 AGRRLNASFVELFIRESEAVQSK 381
A RLNASF ELFIRESEAVQSK
Sbjct: 82 AAHRLNASFAELFIRESEAVQSK 14
Score = 41.8 bits (85), Expect(3) = 2e-031
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 380 LD*TASDSRMKSSTKEALRR 321
LD*TASDSRMKSS KEALRR
Sbjct: 15 LD*TASDSRMKSSAKEALRR 74
Score = 35.4 bits (71), Expect(3) = 2e-025
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1 / -3
Query: 88 KTTETAMAVRAIHTPLLLCTMVVVL 162
+ T TAMAVRAIHTP LL V +L
Sbjct: 322 RKTATAMAVRAIHTPPLLLCTVALL 248
Score = 30.4 bits (60), Expect(3) = 2e-025
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 351 HPRVRGRSVQGRKV 392
HPRVRGRSVQG +
Sbjct: 44 HPRVRGRSVQGTTI 3
Score = 28.1 bits (55), Expect(3) = 2e-031
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / +3
Query: 161 STTTMVHRRSGVWMARTAIAVSVVL 87
S T+ GV MARTAIAV+V L
Sbjct: 249 SNATVQRSSGGV*MARTAIAVAVFL 323
>gb|CW313609.1|CW313609 104_803_11471374_148_35791_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471374, DNA
sequence
Length = 630
Score = 107 bits (229), Expect(2) = 1e-030
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / +3
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 72 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 251
Query: 313 AG 318
G
Sbjct: 252 DG 257
Score = 105 bits (224), Expect(3) = 2e-031
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / -3
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 256 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 104
Score = 88.6 bits (187), Expect(3) = 2e-025
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / +2
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 104 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 211
Score = 46.9 bits (96), Expect(2) = 1e-030
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1 / +3
Query: 313 AGRRLNASFVELFIRESEAVQSKAGRYQSLQEIP 414
A RLNASF ELFIRESEAVQSK +++ +P
Sbjct: 258 AAHRLNASFAELFIRESEAVQSKVLQFRRRIPLP 359
Score = 41.8 bits (85), Expect(3) = 2e-031
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 380 LD*TASDSRMKSSTKEALRR 321
LD*TASDSRMKSS KEALRR
Sbjct: 325 LD*TASDSRMKSSAKEALRR 266
Score = 35.4 bits (71), Expect(3) = 2e-025
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1 / +3
Query: 88 KTTETAMAVRAIHTPLLLCTMVVVL 162
+ T TAMAVRAIHTP LL V +L
Sbjct: 18 RKTATAMAVRAIHTPPLLLCTVALL 92
Score = 30.4 bits (60), Expect(3) = 2e-025
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 351 HPRVRGRSVQGRKV 392
HPRVRGRSVQG +
Sbjct: 296 HPRVRGRSVQGTTI 337
Score = 28.1 bits (55), Expect(3) = 2e-031
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / -3
Query: 161 STTTMVHRRSGVWMARTAIAVSVVL 87
S T+ GV MARTAIAV+V L
Sbjct: 91 SNATVQRSSGGV*MARTAIAVAVFL 17
>gb|CW303280.1|CW303280 104_787_11465156_116_35675_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465156, DNA
sequence
Length = 604
Score = 107 bits (229), Expect(2) = 1e-030
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / -3
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 551 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 372
Query: 313 AG 318
G
Sbjct: 371 DG 366
Score = 105 bits (224), Expect(3) = 4e-031
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / +1
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 367 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 519
Score = 88.6 bits (187), Expect(3) = 3e-025
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / -2
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 519 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 412
Score = 46.9 bits (96), Expect(2) = 1e-030
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1 / -3
Query: 313 AGRRLNASFVELFIRESEAVQSKAGRYQSLQEIP 414
A RLNASF ELFIRESEAVQSK +++ +P
Sbjct: 365 AAHRLNASFAELFIRESEAVQSKVLQFRRRIPLP 264
Score = 41.8 bits (85), Expect(3) = 4e-031
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1 / +1
Query: 380 LD*TASDSRMKSSTKEALRR 321
LD*TASDSRMKSS KEALRR
Sbjct: 298 LD*TASDSRMKSSAKEALRR 357
Score = 35.0 bits (70), Expect(3) = 3e-025
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1 / -3
Query: 94 TETAMAVRAIHTPLLLCTMVVVL 162
T TAMAVRAIHTP LL V +L
Sbjct: 599 TATAMAVRAIHTPPLLLCTVALL 531
Score = 30.4 bits (60), Expect(3) = 3e-025
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 351 HPRVRGRSVQGRKV 392
HPRVRGRSVQG +
Sbjct: 327 HPRVRGRSVQGTTI 286
Score = 26.7 bits (52), Expect(3) = 4e-031
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1 / +1
Query: 161 STTTMVHRRSGVWMARTAIAVSV 93
S T+ GV MARTAIAV+V
Sbjct: 532 SNATVQRSSGGV*MARTAIAVAV 600
>gb|CW492422.1|CW492422 fsbb001f282l05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282l05, DNA
sequence
Length = 703
Score = 107 bits (229), Expect(2) = 1e-030
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / +2
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 17 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 196
Query: 313 AG 318
G
Sbjct: 197 DG 202
Score = 105 bits (224), Expect(2) = 2e-028
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / -2
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 201 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 49
Score = 46.9 bits (96), Expect(2) = 1e-030
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1 / +2
Query: 313 AGRRLNASFVELFIRESEAVQSKAGRYQSLQEIP 414
A RLNASF ELFIRESEAVQSK +++ +P
Sbjct: 203 AAHRLNASFAELFIRESEAVQSKVLQFRRRIPLP 304
Score = 41.8 bits (85), Expect(2) = 2e-028
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 380 LD*TASDSRMKSSTKEALRR 321
LD*TASDSRMKSS KEALRR
Sbjct: 270 LD*TASDSRMKSSAKEALRR 211
>gb|CW184184.1|CW184184 104_600_11165019_116_36685_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165019, DNA
sequence
Length = 724
Score = 107 bits (229), Expect(2) = 2e-028
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / +3
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSA 312
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH
Sbjct: 462 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFG 641
Query: 313 AG 318
G
Sbjct: 642 DG 647
Score = 105 bits (224), Expect(3) = 6e-030
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -1 / -1
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
P+ +WRGS*AGRLSGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 646 PSPKWRGS*AGRLSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 494
Score = 88.6 bits (187), Expect(3) = 3e-023
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / +2
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 494 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 601
Score = 39.1 bits (79), Expect(2) = 2e-028
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +1 / +3
Query: 313 AGRRLNASFVELFIRESEAVQSK 381
A RLNASF ELFIRESE QSK
Sbjct: 648 AAHRLNASFRELFIRESEGRQSK 716
Score = 36.3 bits (73), Expect(3) = 6e-030
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -1 / -1
Query: 380 LD*TASDSRMKSSTKEALRR 321
LD* SDSRMKSS KEALRR
Sbjct: 715 LD*RPSDSRMKSSRKEALRR 656
Score = 35.4 bits (71), Expect(3) = 3e-023
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1 / +3
Query: 88 KTTETAMAVRAIHTPLLLCTMVVVL 162
+ T TAMAVRAIHTP LL V +L
Sbjct: 408 RKTATAMAVRAIHTPPLLLCTVALL 482
Score = 28.1 bits (55), Expect(3) = 6e-030
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 161 STTTMVHRRSGVWMARTAIAVSVVL 87
S T+ GV MARTAIAV+V L
Sbjct: 481 SNATVQRSSGGV*MARTAIAVAVFL 407
Score = 23.1 bits (44), Expect(3) = 3e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 351 HPRVRGRSVQG 383
HPRVR SVQG
Sbjct: 686 HPRVRRPSVQG 718
>gb|CN149106.1|CN149106 WOUND1_60_F07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_60_F07_A002 5', mRNA sequence
Length = 903
Score = 103 bits (220), Expect(2) = 1e-028
Identities = 44/106 (41%), Positives = 56/106 (52%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 500 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 679
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYFDELLPRL K G DGN S +Y +VA
Sbjct: 680 WKMYFDELLPRLVKEGSDGNAGSSAVCDTTCLQALSKRIHYGMFVA 817
Score = 44.1 bits (90), Expect(2) = 1e-028
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 362 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 466
>gb|CW309305.1|CW309305 104_798_11469125_116_36239_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469125, DNA
sequence
Length = 666
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = -3 / +1
Query: 609 KXXKICIXSYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQI 469
K KICI SYG+VAII L REQL+EVHAPYGV+NV * GSGIQI
Sbjct: 139 KTCKICINSYGIVAIITVLGQQREQLIEVHAPYGVINVK*CGSGIQI 279
Score = 79.0 bits (166), Expect(2) = 6e-028
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +1 / -1
Query: 469 DLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYAV 582
DLYPAA +NVNDAIWSMYF+ELLP L K GDDGNYAV
Sbjct: 279 DLYPAAALLNVNDAIWSMYFNELLPLLAKNGDDGNYAV 166
Score = 74.4 bits (156), Expect(2) = 1e-026
Identities = 32/47 (68%), Positives = 33/47 (70%)
Frame = -2 / +3
Query: 610 EXXQDLHQXLRRSCHHRHX*XAEGAARRSTCSIWRR*R*LXXQRDTD 470
E QDLHQ LR SCHH AEGAA STCSIWR *R*+ QRDTD
Sbjct: 138 EDMQDLHQQLRHSCHHHRSWPAEGAAH*STCSIWRH*R*VMRQRDTD 278
Score = 68.4 bits (143), Expect(2) = 1e-028
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = -1 / +3
Query: 470 SLVKLYGGARAEGTL*AKNGISCRLWYLPA 381
+LVKLYGGAR +GTL*AKNGISCRLWYLPA
Sbjct: 387 TLVKLYGGARVKGTL*AKNGISCRLWYLPA 476
Score = 67.0 bits (140), Expect(2) = 1e-026
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = -2 / +1
Query: 466 L*SCMEAPEQKELCKRRMESPVGFGTFRP 380
L*SCME PE KELCKRRMESPVGFGTFRP
Sbjct: 391 L*SCMEVPE*KELCKRRMESPVGFGTFRP 477
Score = 66.6 bits (139), Expect(2) = 6e-028
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +1 / -3
Query: 382 AGRYQSLQEIPFFAYRVPSALAPPYNFT 465
AGRYQSLQEIPFFAYRVP LAPPYNFT
Sbjct: 475 AGRYQSLQEIPFFAYRVPFTLAPPYNFT 392
Score = 63.8 bits (133), Expect(2) = 1e-021
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = +3 / -2
Query: 381 GRKVPKPTGDSILRLQSSFCSGASIQLHK 467
GRKVPKPTGDSILRLQSSF SG SIQLHK
Sbjct: 476 GRKVPKPTGDSILRLQSSFHSGTSIQLHK 390
Score = 60.6 bits (126), Expect(2) = 1e-021
Identities = 31/47 (65%), Positives = 34/47 (72%)
Frame = +3 / -3
Query: 471 SVSRCXXSQR*RRHMEHVLRRAAPSAX*XWR*WQLRRSX*CRSCXSS 611
SVSRC + R* RHMEHVL+ AAPSA *WQL R+ *CRSC SS
Sbjct: 277 SVSRCRIT*R**RHMEHVLQ*AAPSAGQER**WQLCRNC*CRSCMSS 137
>gb|CN148636.1|CN148636 WOUND1_57_G10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_57_G10_A002 5', mRNA sequence
Length = 812
Score = 101 bits (216), Expect(2) = 4e-028
Identities = 43/105 (40%), Positives = 55/105 (52%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 496 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 675
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYV 648
W MYFDELLPRL K G DGN S +Y +V
Sbjct: 676 WKMYFDELLPRLVKEGSDGNAGSSAVCDTTCLQALSKRIHYGMFV 810
Score = 44.1 bits (90), Expect(2) = 4e-028
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 358 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 462
>gb|CN142104.1|CN142104 WOUND1_3_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_H04_A002 5', mRNA sequence
Length = 803
Score = 101 bits (215), Expect(2) = 6e-028
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 524 SLVEYMVRETEKLHAQVGRYSSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 703
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W MYFDELLPRL K G DGN
Sbjct: 704 WKMYFDELLPRLVKEGSDGN 763
Score = 44.1 bits (90), Expect(2) = 6e-028
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 386 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 490
>gb|CF430327.1|CF430327 PH1_27_B12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_B12_A002 5', mRNA sequence
Length = 689
Score = 101 bits (215), Expect(2) = 6e-028
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 388 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 567
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W MYFDELLPRL K G DGN
Sbjct: 568 WKMYFDELLPRLVKEGSDGN 627
Score = 44.1 bits (90), Expect(2) = 6e-028
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 250 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 354
>gb|CN137957.1|CN137957 OX1_60_G12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_60_G12_A002 5', mRNA sequence
Length = 746
Score = 99.6 bits (211), Expect(2) = 2e-027
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 499 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPI*YPRVLHPIADSININKEI 678
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W MYFDELLPRL K G DGN
Sbjct: 679 WKMYFDELLPRLVKEGSDGN 738
Score = 44.1 bits (90), Expect(2) = 2e-027
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 361 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 465
>gb|CN129625.1|CN129625 RHOH1_36_A11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_A11_A002 5', mRNA sequence
Length = 709
Score = 98.2 bits (208), Expect(2) = 5e-027
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +1 / +3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 402 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPMVLHPIADSININKEI 581
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W MYF ELLPRL K G DGN
Sbjct: 582 WKMYFHELLPRLVKEGSDGN 641
Score = 44.1 bits (90), Expect(2) = 5e-027
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 264 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 368
>gb|CX613679.1|CX613679 GABR1_9_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_C08_A002 5', mRNA sequence
Length = 756
Score = 96.4 bits (204), Expect(2) = 2e-026
Identities = 39/80 (48%), Positives = 48/80 (60%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L P A S+N+N I
Sbjct: 500 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLRPIADSININKEI 679
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W MYFDE LPRL K G DGN
Sbjct: 680 WKMYFDEHLPRLVKEGSDGN 739
Score = 44.1 bits (90), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 362 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 466
>gb|CN152208.1|CN152208 WOUND1_80_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C01_A002 5', mRNA sequence
Length = 495
Score = 104 bits (222), Expect(2) = 4e-025
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +1 / +1
Query: 133 LLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLH 306
L ++++ GLVSPSTA LSLDTVRDFLTREEDTIVFSLIER KYPL+RPAY+PLH
Sbjct: 262 LCTVALLLLTGGLVSPSTAELSLDTVRDFLTREEDTIVFSLIERTKYPLDRPAYEPLH 435
Score = 99.6 bits (211), Expect(3) = 1e-025
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = -1 / -2
Query: 308 EWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRP 165
+WRGS*AGR SGYL LSMRLNTMVSSSRVRKSLTVSRLS AVDGDTRP
Sbjct: 437 KWRGS*AGRSSGYLVLSMRLNTMVSSSRVRKSLTVSRLSSAVDGDTRP 294
Score = 88.6 bits (187), Expect(2) = 1e-021
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +3 / +3
Query: 165 RPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQV 272
RPRV VHRRAQP HGEGLPDAGGGHHCVQPHRE QV
Sbjct: 294 RPRVAVHRRAQPRHGEGLPDAGGGHHCVQPHREDQV 401
Score = 35.4 bits (71), Expect(2) = 1e-021
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 88 KTTETAMAVRAIHTPLLLCTMVVVL 162
+ T TAMAVRAIHTP LL V +L
Sbjct: 208 RKTATAMAVRAIHTPPLLLCTVALL 282
Score = 31.3 bits (62), Expect(2) = 4e-025
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 313 AGRRLNASFVELFIRE 360
A RLNASF ELFIRE
Sbjct: 448 AAHRLNASFAELFIRE 495
Score = 28.1 bits (55), Expect(3) = 1e-025
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 161 STTTMVHRRSGVWMARTAIAVSVVL 87
S T+ GV MARTAIAV+V L
Sbjct: 281 SNATVQRSSGGV*MARTAIAVAVFL 207
Score = 28.1 bits (55), Expect(3) = 1e-025
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -2
Query: 359 SRMKSSTKEALRR 321
SRMKSS KEALRR
Sbjct: 494 SRMKSSAKEALRR 456
>gb|CX617402.1|CX617402 GABR1_33_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_C02_A002 5', mRNA sequence
Length = 733
Score = 90.9 bits (192), Expect(2) = 8e-025
Identities = 36/74 (48%), Positives = 46/74 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 512 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 691
Query: 514 WSMYFDELLPRLXK 555
W MYFDELLPRL K
Sbjct: 692 WKMYFDELLPRLVK 733
Score = 44.1 bits (90), Expect(2) = 8e-025
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 374 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 478
>gb|CN131232.1|CN131232 RHOH1_46_E06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_E06_A002 5', mRNA sequence
Length = 731
Score = 89.0 bits (188), Expect(2) = 3e-024
Identities = 35/72 (48%), Positives = 45/72 (62%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + ++ GRY S E PFF +P PP + L+P A S+N+N I
Sbjct: 511 SLVEYMVRETEKLHAQVGRYNSPDEYPFFPEDLPEPRLPPIQYPRVLHPIADSININKEI 690
Query: 514 WSMYFDELLPRL 549
W MYFDELLPRL
Sbjct: 691 WKMYFDELLPRL 726
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R ED+I+F L+ERA++ N YD
Sbjct: 373 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNAETYD 477
>gb|CL166445.1|CL166445 104_362_10809380_114_31798_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809380, DNA
sequence
Length = 589
Score = 81.7 bits (172), Expect(2) = 7e-023
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1 / -3
Query: 205 TVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAG 318
TVRDFLTREEDTIVFSLIER KYPLNRPAY+PLH G
Sbjct: 587 TVRDFLTREEDTIVFSLIERTKYPLNRPAYEPLHFGDG 474
Score = 46.9 bits (96), Expect(2) = 7e-023
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1 / -3
Query: 313 AGRRLNASFVELFIRESEAVQSKAGRYQSLQEIP 414
A RLNASF ELFIRESEAVQSK +++ +P
Sbjct: 473 AAHRLNASFAELFIRESEAVQSKVLQFRRRIPLP 372
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 652,496,150
Number of Sequences: 832831
Number of extensions: 8673825
Number of successful extensions: 117739
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24000363764
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)